rna5743, rna5743 (mRNA) Nannochloropsis gaditana

Overview
Namerna5743
Unique Namerna5743
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length360
Alignment locationCM002466.1:738732..740806 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g21.3833.mrna
Orig protein idgnl|cribi|Naga_100086g21.3833
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:738732..740806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g21gene5548Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5743rna5743-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24933.1cds5728Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5743 ID=rna5743|Name=rna5743|organism=Nannochloropsis gaditana|type=mRNA|length=360bp
ATGATGAAAGTTTGCGATACGCAGATCGGTGGAGGTGAGCTCTATGTAAC
CAAGGGCTTATCAGGAGGAGAGCGAAAGCGTCTCAATATTGCCACAGAGC
TACTTGCGAATCCATCAATTTTGCTACTGGATGAGCCAACATCGGGCCTG
GATTCTGTGATGGGGGAGCTCATCTGCCTACTTCTCAACGATCTAGCGAG
ACGCGAGCCGAAGCGAACTGTTGTAGTGGCAGTCCATTCGCCGCCTTCCC
GCATCTTCACTCTTTTTTCATTGCTGACTGTGCTTACTAGCAATGGTGAA
CTTGCTTACTTTGGAGAACGCAGCGGTGTCCTTCCTTTTGTGGAGAGCTT
AGGCTGGTAG
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protein sequence of rna5743

>rna5743-protein ID=rna5743-protein|Name=rna5743|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MTRSHRVVKGLFPRVPLARLLALFFLVHPGSSATFESRHYLTQRYPNRDV
IPPRSLLTSQRRRRYDTTTSPLSFIRPPVQAIPARSDKDQAILSSAVALK
VIIGSFVSELETCNHERRRIGGPRPRSPDQRSSHAHPQQLQSNSQGRGHH
KQRLVSSLPSSLASVQGGASVSSPSPVGKLFQKSAATLVDAYDGVLSFVG
SRIVTTEASFNKALLAVSSSLATPLSQVEGRTAGFTSLMSRNGDAHMGMR
PSSIEASSEAARGRHDNYLSVAGMGGSGEALSTSFSSPALVGFMDVDPFE
KSKKHFKRNTSLAKLLL
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mRNA from alignment at CM002466.1:738732..740806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5743 ID=rna5743|Name=rna5743|organism=Nannochloropsis gaditana|type=mRNA|length=2075bp|location=Sequence derived from alignment at CM002466.1:738732..740806+ (Nannochloropsis gaditana)
AAACTCGCGCTGGTCGGATAAATTTTCGCATGTTTTAAGGCTCCTATCTG
TAGGAAGGTGGCAGCCTTCATGGCTGCATTGGCATGTGCCCGGTGTGCGG
CGTTTTACCATGGTTTGGTGCCCGTTGCCACACGCGTACGTCGATGAAGC
GCCGAGCCACATGGACTCGTGAGCGTTAAAGTTCGTGTCTTCAAGACTCA
ATCGGCCTTTACACGTCCACATTTCCACCTGAGGGCTTCCAAATCCTCCA
TATCTTGTCTGTGAGCGTTTATCTCACGCTTATTTCCATACCTGGACATA
CCTGCACAGGCACACAACCTAAGTGATCACCCATCAAGGCAACGCGCAGC
GCCTAACTTTTTCGGCTTTCCGAGACTATGACACGTTCCCATCGGGTCGT
GAAAGGTCTTTTTCCCCGTGTTCCCTTAGCCCGTCTTTTGGCTCTATTTT
TCCTGGTGCATCCAGGCTCCAGTGCCACGTTTGAAAGTCGTCATTACCTG
ACACAGCGGTACCCGAATCGCGATGTTATTCCTCCCAGGAGCCTCCTCAC
CAGCCAGCGACGGCGGCGTTATGACACTACCacatcccccctctccttca
ttcGTCCACCCGTCCAGGCCATTCCAGCCCGTAGTGACAAGGATCAGGCT
ATACTTTCTTCAGCGGTGGCCCTTAAAGTGATTATTGGCAGTTTTGTCTC
CGAACTGGAGACTTGCAATCACGAGCGCCGGCGGATCGGGGGTCCGCGTC
CTCGATCTCCCGATCAGCGATCCTCACACGCCCATCCCCAGCAGCTGCAA
TCAAATTCACAGGGACGTGGCCACCACAAGCAGAGGTTGGTTTCATCTTT
GCCCTCGTCTCTGGCATCGGTGCAGGGGGGAGCCTCTGTCTCGTCCCCCT
CACCAGTAGGAAAGCTCTTTCAAAAATCAGCGGCcacactggtcgacgcc
taCGATGGTGTCCTAAGCTTCGTAGGGAGCCGGATCGTAACGACGGAGGC
TAGCTTTAATAAGGCCTTATTggccgtttcctcctcccttgccaccCCTT
TGTcgcaggtggaggggaggaccgCGGGATTTACCTCCTTGATGTCTCGG
AACGGAGATGCACATATGGGCATgcggccttcctccatcgAGGCCTCCTC
TGAAGCTGCACGGGGAAGGCACGACAATTATCTCTCTGTGGCGGGCATGG
GCGGGTCTGGGGAGGCATTGagcacttccttctcctcgccggCCTTGGTC
GGGTTCATGGACGTGGATCCCTTcgagaagagcaagaagcaTTTCAAACG
CAATACCTCCCTGGCGAAGCTTCTCTTGTGATTGAGGGGTACGTCCTGCG
GATACGCTCGATGAATCCCCCTCGGGCCTTCAGAGGCTCTTGTCCTGTAG
ATTAGTAGGGTTCGTTCAAACTCGCAACGCTCGTAGGTTTGTGTCCTTGT
CGGGGTCATCAGTCTGCGGCACGGGCGGGTGAGGCacggaaagagagagg
gaggggcgggatgGACGGAGTTTCTTGTTTCGGAAACTTCAATACGCTTA
AACCGTTATCGTAAACCTGTGTAGTAGTCCGACTTGCTTCCGACTATACA
TTACAACATGATCTAGTGCGTGAAAATGCCTGGAGAAAATGCGCGGGGGA
GAAGCATGCTCAGGCGATGCCATGCATCTGCCTCTATTAGAGATCTTTCG
GTTATTGCAATTTTTTAGGTCAAGAGAGTGACTGTTCTAGCATTTTTATT
CAAAACTGTTGCTCATGAAGAAGTCAAAGGAGAGTTCCGAGGTGCCACGA
GAGCCAGAGCgtgcgaaggagaggaaggaaggggggaaacaAGCGAGAAG
GGAGTGTTGCCAACCAAAATCCTTTGAATTTGGATGAAAATGACGCCAAA
GCGTACATGTAACAATTTCAAGGAGTAGTCGGCGGTTCTCCGGGGGTAGG
ATGAAGGCTCGGGAAATGTTTGCGCGCTTGTCGGGAAAGGTTAGCGAGGA
TCCAGAAGATAATTCAAGTACAAGTAAACTCAAAGAACTAAATATCGAGG
CCTTATTCAAGGGACATTCAAAACA
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Coding sequence (CDS) from alignment at CM002466.1:738732..740806+

>rna5743 ID=rna5743|Name=rna5743|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002466.1:738732..740806+ (Nannochloropsis gaditana)
ATGACACGTTCCCATCGGGTCGTGAAAGGTCTTTTTCCCCGTGTTCCCTT
AGCCCGTCTTTTGGCTCTATTTTTCCTGGTGCATCCAGGCTCCAGTGCCA
CGTTTGAAAGTCGTCATTACCTGACACAGCGGTACCCGAATCGCGATGTT
ATTCCTCCCAGGAGCCTCCTCACCAGCCAGCGACGGCGGCGTTATGACAC
TACCacatcccccctctccttcattcGTCCACCCGTCCAGGCCATTCCAG
CCCGTAGTGACAAGGATCAGGCTATACTTTCTTCAGCGGTGGCCCTTAAA
GTGATTATTGGCAGTTTTGTCTCCGAACTGGAGACTTGCAATCACGAGCG
CCGGCGGATCGGGGGTCCGCGTCCTCGATCTCCCGATCAGCGATCCTCAC
ACGCCCATCCCCAGCAGCTGCAATCAAATTCACAGGGACGTGGCCACCAC
AAGCAGAGGTTGGTTTCATCTTTGCCCTCGTCTCTGGCATCGGTGCAGGG
GGGAGCCTCTGTCTCGTCCCCCTCACCAGTAGGAAAGCTCTTTCAAAAAT
CAGCGGCcacactggtcgacgcctaCGATGGTGTCCTAAGCTTCGTAGGG
AGCCGGATCGTAACGACGGAGGCTAGCTTTAATAAGGCCTTATTggccgt
ttcctcctcccttgccaccCCTTTGTcgcaggtggaggggaggaccgCGG
GATTTACCTCCTTGATGTCTCGGAACGGAGATGCACATATGGGCATgcgg
ccttcctccatcgAGGCCTCCTCTGAAGCTGCACGGGGAAGGCACGACAA
TTATCTCTCTGTGGCGGGCATGGGCGGGTCTGGGGAGGCATTGagcactt
ccttctcctcgccggCCTTGGTCGGGTTCATGGACGTGGATCCCTTcgag
aagagcaagaagcaTTTCAAACGCAATACCTCCCTGGCGAAGCTTCTCTT
GTGA
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Synonyms
Publications