rna574, rna574 (mRNA) Nannochloropsis gaditana

Overview
Namerna574
Unique Namerna574
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length393
Alignment locationCM002455.1:1426381..1427208 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100193g1.5874.mrna
Orig protein idgnl|cribi|Naga_100193g1.5874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1426381..1427208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100193g1gene552Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna574rna574-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30091.1cds574Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna574 ID=rna574|Name=rna574|organism=Nannochloropsis gaditana|type=mRNA|length=393bp
ATGCTGGCATTCGCTTCGAGACGACTGGTAGTCGCCGGTGCTGTCACCCG
GGCAGGCACCCGAGGGGCGCTGCCACGCGCATCAAGGCCGAAATATCTCG
CATCCACGATGGAAAGAGCCACGTTTGCGTCCCTTCCTGAGCATACTGTG
GTGGGAATGCCAGCACTTTCGCCCACGATGACCCACGGCAATGTGGCGGT
GTGGCACAAGAAGGAAGGCGATGAAATCGGGCCGGGCGATGCCCTGTGCG
ACATCGAGACGGACAAGGCAACCATGGCCTTCGAAGCGCAGGATGAGGGA
GCCGTGGCCAAAATCCTAGTCGAAGAGGGCACGAGCGACATTGCCGTCGG
ATCACCCATCATGGTCATCCCAGCCCCGCCCCCGCTGCTGTAG
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protein sequence of rna574

>rna574-protein ID=rna574-protein|Name=rna574|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
PPPPPLPPPLPRYQMSPMPSNAGELSPGAGLWRRGRREGNFVPDMSLKRK
GISDVGFNRLIGGFCEVSVALLCTCEAGNVPLLHAFLLKFSSFFIPFFVI
CGSLSFFSGLDRCLLFYHENDCERD
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mRNA from alignment at CM002455.1:1426381..1427208+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna574 ID=rna574|Name=rna574|organism=Nannochloropsis gaditana|type=mRNA|length=828bp|location=Sequence derived from alignment at CM002455.1:1426381..1427208+ (Nannochloropsis gaditana)
CCNccccctcccccccttcctccccctctccctcgatACCAGATGAGTCC
TATGCCTTCAAACGCTGGGGAACTTTCGCCCGGGGCGGGGCTTTGGCGaa
gaggtaggagggaagggaattTCGTGCCTGACATGTCTttaaaaagaaag
gggattTCAGATGTCGGATTCAATCGTCTCATTGGCGGTTTTTGTGAGGT
ATCTGTGGCCCTCTTGTGTACCTGCGAAGCTGGGAatgttcctcttctcc
atgcatttcttttaaaattttcctccttttttatCCCTTTTTTTGTCATT
TGTGGGTCgttgtctttcttttctggTCTTGATCGctgtctccttttcta
tcATGAGAATGACTGTGAAAGGGATTAGGCTGATATTTAGCGCTTAACGA
TTGAAGATTTCTTAAACTAGCAGTCCATCATTTCTTCTGCGAAATCTGAT
CCTTTCTTTACTCTCCCGTTGACCGCAGTCTTAGCAAGGCGCAAAAGGCA
TACGTGGATGCCTTCGGCTCCACTGGTCAAACGCCTATGTGACAGGAAGA
GATCAGTCTTACCGCCAGAGGTGGAGCATCCCGCAGAGTTTGATACCTAT
CAAATCAGGATTGGATCGTGtacgaaggaaaagggaaaaggcagacaAGG
ATAGAGAGGACTTTTTTGGGAAAGGTTATGGGTATAGAAGTTGCTGATTG
ATTAAATCAATCGATGCCATTAGATTTCACCCATatatgaggaagaagaa
attgaTCGATTTCATGGTCGGGGTACGAGAATTAAATGTTGTCGCAGTTT
TGCGGCACGAATTTCTTTCGGGATTAGC
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Coding sequence (CDS) from alignment at CM002455.1:1426381..1427208+

>rna574 ID=rna574|Name=rna574|organism=Nannochloropsis gaditana|type=CDS|length=378bp|location=Sequence derived from alignment at CM002455.1:1426381..1427208+ (Nannochloropsis gaditana)
CCNccccctcccccccttcctccccctctccctcgatACCAGATGAGTCC
TATGCCTTCAAACGCTGGGGAACTTTCGCCCGGGGCGGGGCTTTGGCGaa
gaggtaggagggaagggaattTCGTGCCTGACATGTCTttaaaaagaaag
gggattTCAGATGTCGGATTCAATCGTCTCATTGGCGGTTTTTGTGAGGT
ATCTGTGGCCCTCTTGTGTACCTGCGAAGCTGGGAatgttcctcttctcc
atgcatttcttttaaaattttcctccttttttatCCCTTTTTTTGTCATT
TGTGGGTCgttgtctttcttttctggTCTTGATCGctgtctccttttcta
tcATGAGAATGACTGTGAAAGGGATTAG
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Synonyms
Publications