rna5739, rna5739 (mRNA) Nannochloropsis gaditana

Overview
Namerna5739
Unique Namerna5739
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002466.1:717524..719720 -

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Properties
Property NameValue
ProductTMS membrane protein/tumor differentially expressed protein
Orig transcript idgnl|cribi|Naga_100086g26.3834.mrna
Orig protein idgnl|cribi|Naga_100086g26.3834
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:717524..719720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g26gene5544Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24934.1cds5724Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5739rna5739-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5739 ID=rna5739|Name=rna5739|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGACATCGATTTGCTTGTGCGGTGTACCTCATCTTAGCAATGGTTGCCA
GGCCTTTCTACTGAACCACCCCCACTATCTAGGAGGTGACATGCTTCATC
TCTTTTGGGACGGCACGCCACTTTTTTGTCTGTGTCATCTAGCCTGCAAT
TCGTTCCCTGCCACTGCTTCACGACCCACTTCATACCTCTTCAAACCTCC
TATGCACATGGTCCCCTCGCTTGCGTATTCACAACATACCTTCACAAGTG
TCATCTCAATCATCACCATCATCGTCACCGCCATCATCCCTCCAACCTCC
AAGCATAACTCCTCCACTTTCACTTTTTGCTTCACCACACCGCGGCGAAA
TATGGTATGCACGCATCTTCCTCCCTCCCCTTCGCACATCCTGTTTTTTT
ACAGATGGCGTGCTTTCATTGTGAAGCTGGTTAGCGTCAACGCTCTGTGT
TCACGTATCCATCTTTCGCGGTAA
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protein sequence of rna5739

>rna5739-protein ID=rna5739-protein|Name=rna5739|organism=Nannochloropsis gaditana|type=polypeptide|length=462bp
MGIVFSMGTSAASALASCCVGSAASCVCAGLKQCLPSGYSAAKVYALLLF
FASVVAALILRTTEPAINADYFTVRCTGEFKDRCYGFQAVYRLSFVDFFF
FLALALGSKFVVGVHTHAWGLKYLVFLGFLIGMFFVDNKVFAGYVHLARV
ASLVYLVAQVVTLINFSYNMHTTLMGKVEAAESSGETNGAKLYKVIYLCL
SLFCLAGGLTGIGLLYAFYAHCRLSQFWITLTLLVSLACLFSSLLDRIGM
GLLTPSVLFLYFDYQCWSAILSNPDPACNKTASLASSKAKSWNTAVALVF
LAVSLTYTGWSTYRSIVGTELQPEQVAAAAAGGSGAGAGGENLTKILTGE
GDTTTTATPVIVTEEGDEEKGGAAVPTLTAADQAEASLIWIFHLLLALGG
AYMAMAITNWGNANGIPDGVGDGDSTVGRESMWLKIVSQWITMLLYAWSL
WAPVCRGEGEEY
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mRNA from alignment at CM002466.1:717524..719720-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5739 ID=rna5739|Name=rna5739|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp|location=Sequence derived from alignment at CM002466.1:717524..719720- (Nannochloropsis gaditana)
ATCTATTGAGATAATTTTATTCAAAAATGTAGATGGCAAGGAAATCGCCC
TCCTTTTCAACATCCTCTGAGTGCAGCGGGCTACGATCCGAGGCTCATGG
TACGTCCTTGCTGTTTGTCGGTTTTGTTATTTTTGGGTAGAAAGCATTTC
CAAGATGAGATCCTTCAGTGACGAGCAAAGGATAACGTATTTTGAATCCC
CTAGCCTTCGCATTGTTGCGACTTTCAGATGCATCCATGTTTCCAAGCCG
ACGGCCAGGGAGAGGCCCGGGGGCAAGAGGGAGCGCAGCTTGAAGCAAGT
GAGGCCCATCGTCAGGCCTCGGGGTCCAAAAGATGTGCCGCCTCCCTGTC
GTGCCCGTGCCCACAGCTGCGAAAGGCTTGCTTGGCCACCTCTTTCTCAT
TCCATTCACTTTGGTGTGACGGGGTCAAATTCTAGCGAGAGCCTTATTGT
GGGCATGCGATGTTCCCTTTAATCGCTGCCAGAAGAACTTCCGGGACGTG
GGCTCATAAAATACTTCCAACACACTTAAGCTCATAAAATACTTCCAACA
CACTTAGAGAGGAGATCAATCGGAAAAGAAGGGATAATGGGAATTGTTTT
CTCCATGGGTACATCAGCTGCCAGTGCCTTGGCCTCATGCTGCGTCGGAA
GTGCGGCTTCTTGCGTCTGCGCAGGCTTAAAGCAATGCCTACCGAGTGGG
TACAGTGCAGCGAAAGTATACGCCCTGCTCCTCTTTTTCGCGTCTGTTGT
GGCCGCATTGATTCTGCGCACCACAGAGCCAGCCATAAATGCTGACTATT
TTACTGTGCGTTGCACGGGGGAGTTCAAGGACCGGTGCTACGGTTTTCAG
GCCGTATACCGGCTGTCTTTCGTCGATTTTTTCTTTTTTCTAGCGTTGGC
CTTGGGAAGTAAGTTTGTCGTGGGTGTCCATACTCATGCCTGGGGCCTGA
AATATCTAGTTTTTTTGGGCTTCCTCATCGGCATGTTCTTCGTGGACAAC
AAGGTCTTCGCCGGCTACGTGCATTTGGCCCGCGTTGCCTCCTTAGTGTA
CTTGGTCGCGCAAGTTGTGACATTGATCAATTTCTCCTACAACATGCACA
CGACATTGATGGGCAAGGTGGAAGCGGCGGAAAGTAGTGGGGAGACGAAC
GGTGCTAAACTTTACAAAGTCATCTACCTGTGCCTTTCCTTGTTCTGCTT
GGCAGGGGGGCTGACGGGTATTGGGTTGCTCTACGCGTTCTACGCGCACT
GCCGCCTCTCCCAGTTCTGGATCACCCTGACCTTGCTGGTCAGCCTCGCC
TGCCTTTTCTCCTCCTTGCTGGATCGGATCGGCATGGGCCTGCTCACGCC
CTCCGTTCTCTTCCTCTACTTTGATTACCAATGCTGGTCCGCCATCCTCT
CCAACCCGGATCCCGCCTGCAATAAAACCGCAAGCCTAGCATCCTCCAAA
GCCAAATCTTGGAACACGGCCGTGGCCTTGGTTTTCCTGGCCGTTTCCTT
GACGTATACGGGATGGAGTACGTACAGGTCGATAGTGGGGACGGAACTGC
AACCCGAGCAGGTGGCTGCTGCAGCCGCAGGAGGGAGCGGAGCGGGGGCG
GGGGGGGAAAACCTTACGAAGATTTTGACAGGAGAAGGCGATACTACCAC
CACTGCGACGCCAGTAATTGTGACAGAAGAGGGGGATGAGGAGAAAGGGG
GCGCGGCAGTACCGACGTTGACTGCGGCAGATCAAGCAGAGGCGTCCTTA
ATATGGATATTCCATCTGTTGTTAGCCTTGGGAGGCGCTTACATGGCTAT
GGCCATAACGAACTGGGGAAACGCAAATGGAATTCCAGACGGAGTCGGAG
ATGGAGATTCGACAGTGGGTCGTGAGAGTATGTGGTTGAAGATTGTCAGT
CAGTGGATCACAATGCTGTTGTATGCGTGGAGCCTTTGGGCGCCGGTTTG
CCGGGGGGAGGGGGAGGAGTACTAGAAAAGGAAACATATAGCATCACGGA
GTGTGCTGCTCACAACTTTTGTTGATGATTTGTTTTTGTTTTCTATCCCT
GTTAAGTGCCATTGGACTTCAAACACAAGACGAAAGGGCCTGTTGAGGGA
AAAGGGTGCAGTACAGGAAAGATAACATTGAAAAACTTCTTTAATAGAGC
AATCGATGTCAGAACTGTTGGGACGGTAGATCGTTAGAAAATAAGCA
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Coding sequence (CDS) from alignment at CM002466.1:717524..719720-

>rna5739 ID=rna5739|Name=rna5739|organism=Nannochloropsis gaditana|type=CDS|length=1389bp|location=Sequence derived from alignment at CM002466.1:717524..719720- (Nannochloropsis gaditana)
ATGGGAATTGTTTTCTCCATGGGTACATCAGCTGCCAGTGCCTTGGCCTC
ATGCTGCGTCGGAAGTGCGGCTTCTTGCGTCTGCGCAGGCTTAAAGCAAT
GCCTACCGAGTGGGTACAGTGCAGCGAAAGTATACGCCCTGCTCCTCTTT
TTCGCGTCTGTTGTGGCCGCATTGATTCTGCGCACCACAGAGCCAGCCAT
AAATGCTGACTATTTTACTGTGCGTTGCACGGGGGAGTTCAAGGACCGGT
GCTACGGTTTTCAGGCCGTATACCGGCTGTCTTTCGTCGATTTTTTCTTT
TTTCTAGCGTTGGCCTTGGGAAGTAAGTTTGTCGTGGGTGTCCATACTCA
TGCCTGGGGCCTGAAATATCTAGTTTTTTTGGGCTTCCTCATCGGCATGT
TCTTCGTGGACAACAAGGTCTTCGCCGGCTACGTGCATTTGGCCCGCGTT
GCCTCCTTAGTGTACTTGGTCGCGCAAGTTGTGACATTGATCAATTTCTC
CTACAACATGCACACGACATTGATGGGCAAGGTGGAAGCGGCGGAAAGTA
GTGGGGAGACGAACGGTGCTAAACTTTACAAAGTCATCTACCTGTGCCTT
TCCTTGTTCTGCTTGGCAGGGGGGCTGACGGGTATTGGGTTGCTCTACGC
GTTCTACGCGCACTGCCGCCTCTCCCAGTTCTGGATCACCCTGACCTTGC
TGGTCAGCCTCGCCTGCCTTTTCTCCTCCTTGCTGGATCGGATCGGCATG
GGCCTGCTCACGCCCTCCGTTCTCTTCCTCTACTTTGATTACCAATGCTG
GTCCGCCATCCTCTCCAACCCGGATCCCGCCTGCAATAAAACCGCAAGCC
TAGCATCCTCCAAAGCCAAATCTTGGAACACGGCCGTGGCCTTGGTTTTC
CTGGCCGTTTCCTTGACGTATACGGGATGGAGTACGTACAGGTCGATAGT
GGGGACGGAACTGCAACCCGAGCAGGTGGCTGCTGCAGCCGCAGGAGGGA
GCGGAGCGGGGGCGGGGGGGGAAAACCTTACGAAGATTTTGACAGGAGAA
GGCGATACTACCACCACTGCGACGCCAGTAATTGTGACAGAAGAGGGGGA
TGAGGAGAAAGGGGGCGCGGCAGTACCGACGTTGACTGCGGCAGATCAAG
CAGAGGCGTCCTTAATATGGATATTCCATCTGTTGTTAGCCTTGGGAGGC
GCTTACATGGCTATGGCCATAACGAACTGGGGAAACGCAAATGGAATTCC
AGACGGAGTCGGAGATGGAGATTCGACAGTGGGTCGTGAGAGTATGTGGT
TGAAGATTGTCAGTCAGTGGATCACAATGCTGTTGTATGCGTGGAGCCTT
TGGGCGCCGGTTTGCCGGGGGGAGGGGGAGGAGTACTAG
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Synonyms
Publications