rna5737, rna5737 (mRNA) Nannochloropsis gaditana

Overview
Namerna5737
Unique Namerna5737
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length591
Alignment locationCM002466.1:715688..716140 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g28.3830.mrna
Orig protein idgnl|cribi|Naga_100086g28.3830
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:715688..716140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g28gene5542Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24930.1cds5722Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5737rna5737-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5737 ID=rna5737|Name=rna5737|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
ATGAAGGATCATGTCCTATTTTTTGAAGATTCCCTGAGGTTTGAAGTCTG
TTTTTTACGAAGCTGCTTTTTGCCTCCCCGACGCCGTCTGTTTCCTTTCG
CTTTGTACACTTGCCTGCTACGCAAAGAGAAGTCGTCGCTTCCTCTTTCA
AGTGGACGTCCTTATGATCGGCCCTGTGTGTTCGCATCGTACTGCGTTTG
CCTTGGAATTTCCTTAGGAATAGACGAGGTCGACCATACCCTGTCTACGT
GTGATGTGACTGCCTCCGCCTCTGCTCGCTCCTCTTCGAAATCCCTGCCG
TGCCTCGACTTTTTTACCTGCTTGCCTGTCTCCTGTACACCTCCGCCCCC
CTTCTTACTTTTTGCGTGTAGCGTGATCATCATTACCGTCGTGCACCGTT
GTGGGTCCGAGTCAGTGCCACACACCTGCAGTGTCATCGGAGATGAGACA
CGGGAGACTACCAGACGAAAAGACCGACGGAAGGCCGGTGGATTTTTCTC
GGCTGGGAGTCGGTGCCGAGTTTTTTCATCCACTTGTGCCGGGGCTGCCC
CCCACAAGCTTCGACGTCAAAGCCGACCAGACGAGGTGTAA
back to top

protein sequence of rna5737

>rna5737-protein ID=rna5737-protein|Name=rna5737|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MASLIRLLNRRVTLCESPYSFVPWTPSSYYSHRPVGLLLPSSCQWTAFPR
SLSSLRFESRVLQSFLSAMTVDFEKAFIKRGNVARLGNFFFPTPCRSPCK
FPPLRFAAYQPELSDWGQFERKWSEREWHWPLFFFSSYVGSETGTRQRLL
back to top

mRNA from alignment at CM002466.1:715688..716140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5737 ID=rna5737|Name=rna5737|organism=Nannochloropsis gaditana|type=mRNA|length=453bp|location=Sequence derived from alignment at CM002466.1:715688..716140- (Nannochloropsis gaditana)
ATGGCTTCCCTCATACGACTTTTGAACCGAAGAGTGACACTTTGCGAAAG
CCCCTACTCGTTTGTGCCGTGGACACCTTCCTCCTACTATTCTCATCGTC
CCGTAGGGCTTTTGTTGCCAAGTTCATGCCAATGGACGGCTTTTCCTCGC
TCCCTCAGCTCGTTGAGGTTTGAATCGAGGGTATTGCAATCCTTCCTATC
TGCCATGACCGTAGACTTTGAAAAAGCTTTTATCAAGAGAGGGAATGTGG
CCAGGCTCGGAAACTTTTTCTTCCCCACTCCATGCAGAAGTCCTTGCAAG
TTTCCCCCCCTGCGCTTCGCAGCTTATCAACCAGAATTGTCTGACTGGGG
GCAGTTTGAGCGTAAGTGGTCGGAGAGGGAGTGGCACTGGCCTTTGTTCT
TCTTTTCTTCTTATGTAGGCTCTGAAACTGGGACACGGCAGCGGTTGCTT
TAG
back to top

Coding sequence (CDS) from alignment at CM002466.1:715688..716140-

>rna5737 ID=rna5737|Name=rna5737|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at CM002466.1:715688..716140- (Nannochloropsis gaditana)
ATGGCTTCCCTCATACGACTTTTGAACCGAAGAGTGACACTTTGCGAAAG
CCCCTACTCGTTTGTGCCGTGGACACCTTCCTCCTACTATTCTCATCGTC
CCGTAGGGCTTTTGTTGCCAAGTTCATGCCAATGGACGGCTTTTCCTCGC
TCCCTCAGCTCGTTGAGGTTTGAATCGAGGGTATTGCAATCCTTCCTATC
TGCCATGACCGTAGACTTTGAAAAAGCTTTTATCAAGAGAGGGAATGTGG
CCAGGCTCGGAAACTTTTTCTTCCCCACTCCATGCAGAAGTCCTTGCAAG
TTTCCCCCCCTGCGCTTCGCAGCTTATCAACCAGAATTGTCTGACTGGGG
GCAGTTTGAGCGTAAGTGGTCGGAGAGGGAGTGGCACTGGCCTTTGTTCT
TCTTTTCTTCTTATGTAGGCTCTGAAACTGGGACACGGCAGCGGTTGCTT
TAG
back to top
Synonyms
Publications