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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, RING-type, conserved site |
| Orig transcript id | gnl|cribi|Naga_100148g5.7147.mrna |
| Orig protein id | gnl|cribi|Naga_100148g5.7147 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:685328..688480 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5727 ID=rna5727|Name=rna5727|organism=Nannochloropsis gaditana|type=mRNA|length=717bp
TATCGTTGCTTTAATGACCTTGGAGCCTTGTACCCACGCACAGGGGTGGA
GAATCTCATCATGGACGGCGGGCCTGGCGGTAAGGCCGGTCGGGCTGAGG
CACCAGCATCAGAGCCGATGCCTCCCGTGTGGGCCTCCACGGACCATGCC
CCGCACGTGTTGGAGGAAATTCCAATGCTGCATACACGGGCGGGTCCCCG
CGATGGCAACCAGTGGATTTCGAGGGTGAAGGAGGAGATGCAGGCGGTGA
TTGCCTTGGTCCGCATAAACAAAGAGAAGGACAACGACTGGTTCCAAATC
AACCCCGTGAACAAGCTTTGTACACGGTGGGAGGGGAAATGCTGGACGTA
CCATCAAGGTGTGCGCTTTGAGTTTACCATCCATTTTGACGTGCCAGCTT
CTTATCCAGCAACTTGTCCAGACTTGATCATTCCGCATCTCGACGGCAAG
ACAGCTAAAATTTACCGCGGAGGCCGCATATGCTTAGACCTCCACTTTCA
GCCGCTGTGGGCCCGGAACGTGCCTAAATTTGGCATTGCCCACGCTCTTG
CACTAGGCTTAGGCCCTTGGCTATCGTTGGAAATTCCCTCATTGGTGAGC
GCCGGACTCTTGCCGGTGACGGGGACTACTGCGAGATAAATCGAGGGGGC
CCCGTCCCTGCGAAGCAATGTAATTAGTGTTCTGTAACGAAAGCAAGCAA
AAAGTACCCAATACACA back to topprotein sequence of rna5727 >rna5727-protein ID=rna5727-protein|Name=rna5727|organism=Nannochloropsis gaditana|type=polypeptide|length=891bp
MSGFEKLNTEEREPFNFYVVKQQNRALSAAVKQKERQIRELAVAIREQQR
AQETDTALVSCVERHWRQVEGDARRLLELLGDNGAGVLSGDKNDEATGCA
SSILEKIVLRDADRFLLADVTKVAEAAAVDPLDDILRFDDEAGGEGASGA
DAMDTAGANPPGGKRGTDQGVDEIVVAKVDKSIQERCLLTRQVLQKLVQR
LEDEGKRPGGRGVRGTEEDGHGPSTSMDGPAPPAHGVGSSFTVASEGGSD
RAEMLQARVGFLQDRLTVARSCQQKLYRGLVRALKDRHRYRKAEDWGLVS
RRGAQDLGQKGLRQEGGEDGGSNGHMESAGCCHDEHKMGGHKRKRSLIGA
EAGADGNGKGEEGETTREAQLTAALDTLQELKQLVASRGEELTQMREEKM
ELNRRITSLAGQGLVDGGAGKSAPEKQEGGGIGFPGRLSEEQLVRQPPYQ
SLLSERDNLRRESQMKERQVLSLRQNVGDLEGKVRLLGRSRQAAVEAERG
HFISRTEELTRENQSLRRFVDEHALEMEAKRVLVRQADELKVALAEERAE
ASGLRAITTHQAAELKEARAQWSQLQEQLKAREDEAKRLSEQVLAPLGAD
EAREGRLAELTRQLEEAQGEKEGLGAFQTSLFQETESLTAAYEKLSESTQ
RLKQQVEEKEKRNNRLQDELLKSKATEQMQVERASALERRQQDFERLRLE
QAATVKELQELVELLRTQCAGLAQTRRETEEGAQADAEKLHQAQREADEA
AQSLREFQNKLLAMTSRAEDLSRELDKVERERFLLREEVGSLTRKLQKVQ
VKIEPTQGAGAGGMGLNSATGGGREAAQNETLLKLLNCSVCNVRWKDCVI
TKCYHLFCQPCIQSNLKVRSRKCPACGKHFSENDVKPIFLT back to topmRNA from alignment at CM002466.1:685328..688480+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5727 ID=rna5727|Name=rna5727|organism=Nannochloropsis gaditana|type=mRNA|length=3153bp|location=Sequence derived from alignment at CM002466.1:685328..688480+ (Nannochloropsis gaditana)
CATGCGCCTCAGATCCACTACAGCGCACACCTTCCGAGTCAAACACTCTA
ACGACACTCATTCCATTTTTGTCATATTTGTCATAACAAGTGGTCCGGGA
ACACCTCTTCCCGTTGGGCGGGCAAGGTCTCTTCGCCTTTGCGTCCAATT
GGGGTGAAAAGGGGCAATCGCACATCGGACAGGGTGACGGTATCACCGTC
TCCTTCTGCGCTCGTGGGACTCAGTATTGGGTGCCTCAGCCTGACACCCA
CATATCTAGCACATAGAAGTTATGTCTGGCTTCGAGAAGCTGAACACTGA
AGAGCGGGAACCGTTCAATTTTTACGTTGTGAAGCAACAAAACCGGGCAC
TAAGCGCGGCGGTCAAGCAAAAGGAGCGTCAGATCAGAGAGCTAGCTGTC
GCGATACGAGAGCAGCAGCGCGCGCAGGAGACCGACACTGCCCTTGTTTC
GTGCGTGGAACGGCATTGGCGTCAGGTTGAGGGGGACGCTCGAAGGCTTT
TGGAGTTGCTGGGTGATAATGGTGCGGGGGTCTTGTCGGGGGACAAGAAC
GACGAAGCAACCGGATGTGCGAGCAGTATCCTGGAGAAAATAGTGTTGCG
TGACGCCGACCGCTTTTTGCTTGCGGACGTGACGAAGGTTGCGGAAGCGG
CGGCAGTGGATCCCTTGGACGACATTCTCAGGTTCGATGACGAGGCAGGC
GGCGAAGGGGCGTCGGGGGCAGACGCCATGGACACAGCCGGAGCCAACCC
tccgggagggaaaagaggcacTGATCAAGGCGTGGATGAGATTGTCGTGG
CCAAAGTAGACAAGTCCATCCAAGAGCGCTGCTTGCTGACGCGTCAGGTC
CTGCAAAAGCTGGTGCAGCGGTtggaagatgaaggaaagagaccgggtgg
aaggggggtccgcgggacggaagaggacggTCACGGCCCGAGTACCAGCA
TGGACGGGCCAGCCCCACCAGCGCACGGGGTCGGCAGTTCTTTTACCGTT
GCATCGGAGGGCGGGTCGGACCGCGCGGAGATGTTACAGGCCCGGGTGGG
GTTCTTGCAAGATCGACTGACAGTAGCCCGAAGTTGCCAACAGAAGCTTT
ATCGGGGCCTCGTCCGAGCCTTGAAAGATCGACATCGGTATaggaaggcg
gaggattGGGGCCTTGTTTCCCGACGGGGCGCCCAGGACCTGGGGCAGAA
AGGGCtaaggcaggaagggggggaggacggggggagcaACGGGCACATGG
AGAGTGCGGGGTGTTGCCACGACGAGCATAAGATGGGCGGGCACAAACGG
AAGCGGTCCCTCATTGGTGCCGAGGCAGGGGCAGACGGaaacgggaaggg
ggaagagggcgagacgACGCGCGAGGCGCAGCTGACGGCCGCCTTGGACA
CGCTGCAAGAGCTCAAGCAACTGGTCGCaagccggggagaggagctgacg
caaatgagggaggagaagatggagctGAACCGACGGATAACAAGCCTGGC
AGGACAGGGCCTGGTGGATGGGGGCGCCGGGAAGTCCGCGCCCGAGAagc
aagaggggggggggatcgggTTCCCAGGGCGACTTTCGGAGGAGCAGCTC
GTCCGCCAGCCCCCCTACCAGAGCCTGCTGTCGGAGAGAGACAATTTGCG
CCGTGAAAGCCAGATGAAGGAACGGCAAGTGCTCAGTCTCCGCCAAAATG
TGGGGGATTTGGAGGGCAAGGTCCGGTTGCTCGGCCGGAGCCGTCAGGCG
GctgtggaggcggagcgcgGGCACTTCATCAGCCGCACAGAGGAGCTCAC
GCGGGAGAATCAAAGCTTGAGACGCTTCGTGGACGAACACGCgttggaaa
tggaggcgAAGCGCGTCTTGGTCCGGCAGGCGGATGAGCTGAaggtggcc
ttggcggaggagcgggccgAGGCCAGTGGGCTCCGAGCTATCACCACCCA
TCAAGCCGCCGAGCTCAAGGAAGCTCGGGCGCAATGGTCTCAGCTCCAAG
AACAATTGAAAGCacgggaggacgaggcgaagCGGCTCTCGGAGCAGGTT
TTGGCCCCCTTGGGGGCGGACGAAGCCCGGGAAGGGCGCCTGGCCGAGCT
GACCCGGCAACTGGAGGAAGCtcagggagagaaagagggcctGGGCGCCT
TCCAAACCTCTCTCTTTCAGGAGACAGAGTCACTCACGGCGGCCTACGAA
AAGCTTTCCGAGAGCACCCAGCGACTCAagcagcaggtggaggagaagga
gaagcggaaCAATCGCCTGCAGGATGAGCTGTTGAAGTCCAAGGCTACCG
AACAGATGCAAGTAGAGCGGGCATCGGCGCTGGAAAGACGACAGCAGGAC
TTCGAGAGGCTGCGGCTTGAACAAGCAGCGACAGTGAAGGAGTTACAGGA
GCTGGTAGAGCTGTTGCGGACCCAATGTGCGGGGCTGGCGCAGACGAGGA
GAGAgaccgaggaaggggcgcaGGCGGACGCGGAGAAGCTGCATCAGGCC
CAGCGGGAGGCAGACGAGGCCGCGCAAAGCCTGCGGGAGTTCCAAAACAA
GCTGCTGGCGATGACGAGCAGAGCGGAGGACTTGAGCCGCGAGCTGGACa
aagtggagagggaaaggttCTTGctgcgggaagaggtgggcTCCCTGACT
CGAAAATTACAGAAGGTGCAAGTCAAAATTGAGCCTACACAAGGAGCGGG
TGCCGGAGGCATGGGATTAAATTCTGCCACAGGTGGTGGCCGGGAGGCAG
CGCAAAACGAGACACTTCTAAAGTTGTTGAATTGCTCTGTCTGCAACGTC
CGCTGGAAGGATTGTGTTATTACCAAGTGCTACCATCTTTTCTGCCAGCC
TTGCATTCAGAGCAACCTGAAAGTGCGTAGTCGAAAATGTCCAGCCTGTG
GGAAACATTTTTCAGAGAATGATGTGAAGCCAATTTTCCTGACCTAAGCT
CAAGATGGCAAACTggttggggagggggcgacgggggggggatggcgagA
TGCCGGTGGAGCTCGGTAATGTACTTTTTAACGAATAAAATGGTCGAAGG
ATCCGCAAGACCTTTCTGCATCTTAAGTGTCTACGAGATAAATTGAAATT
GATAGGACAAAAATGCCTGCAAGATAAGAAATAAAAGACAATTGCTTTGC
TGC back to topCoding sequence (CDS) from alignment at CM002466.1:685328..688480+ >rna5727 ID=rna5727|Name=rna5727|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at CM002466.1:685328..688480+ (Nannochloropsis gaditana)
ATGTCTGGCTTCGAGAAGCTGAACACTGAAGAGCGGGAACCGTTCAATTT
TTACGTTGTGAAGCAACAAAACCGGGCACTAAGCGCGGCGGTCAAGCAAA
AGGAGCGTCAGATCAGAGAGCTAGCTGTCGCGATACGAGAGCAGCAGCGC
GCGCAGGAGACCGACACTGCCCTTGTTTCGTGCGTGGAACGGCATTGGCG
TCAGGTTGAGGGGGACGCTCGAAGGCTTTTGGAGTTGCTGGGTGATAATG
GTGCGGGGGTCTTGTCGGGGGACAAGAACGACGAAGCAACCGGATGTGCG
AGCAGTATCCTGGAGAAAATAGTGTTGCGTGACGCCGACCGCTTTTTGCT
TGCGGACGTGACGAAGGTTGCGGAAGCGGCGGCAGTGGATCCCTTGGACG
ACATTCTCAGGTTCGATGACGAGGCAGGCGGCGAAGGGGCGTCGGGGGCA
GACGCCATGGACACAGCCGGAGCCAACCCtccgggagggaaaagaggcac
TGATCAAGGCGTGGATGAGATTGTCGTGGCCAAAGTAGACAAGTCCATCC
AAGAGCGCTGCTTGCTGACGCGTCAGGTCCTGCAAAAGCTGGTGCAGCGG
Ttggaagatgaaggaaagagaccgggtggaaggggggtccgcgggacgga
agaggacggTCACGGCCCGAGTACCAGCATGGACGGGCCAGCCCCACCAG
CGCACGGGGTCGGCAGTTCTTTTACCGTTGCATCGGAGGGCGGGTCGGAC
CGCGCGGAGATGTTACAGGCCCGGGTGGGGTTCTTGCAAGATCGACTGAC
AGTAGCCCGAAGTTGCCAACAGAAGCTTTATCGGGGCCTCGTCCGAGCCT
TGAAAGATCGACATCGGTATaggaaggcggaggattGGGGCCTTGTTTCC
CGACGGGGCGCCCAGGACCTGGGGCAGAAAGGGCtaaggcaggaaggggg
ggaggacggggggagcaACGGGCACATGGAGAGTGCGGGGTGTTGCCACG
ACGAGCATAAGATGGGCGGGCACAAACGGAAGCGGTCCCTCATTGGTGCC
GAGGCAGGGGCAGACGGaaacgggaagggggaagagggcgagacgACGCG
CGAGGCGCAGCTGACGGCCGCCTTGGACACGCTGCAAGAGCTCAAGCAAC
TGGTCGCaagccggggagaggagctgacgcaaatgagggaggagaagatg
gagctGAACCGACGGATAACAAGCCTGGCAGGACAGGGCCTGGTGGATGG
GGGCGCCGGGAAGTCCGCGCCCGAGAagcaagaggggggggggatcgggT
TCCCAGGGCGACTTTCGGAGGAGCAGCTCGTCCGCCAGCCCCCCTACCAG
AGCCTGCTGTCGGAGAGAGACAATTTGCGCCGTGAAAGCCAGATGAAGGA
ACGGCAAGTGCTCAGTCTCCGCCAAAATGTGGGGGATTTGGAGGGCAAGG
TCCGGTTGCTCGGCCGGAGCCGTCAGGCGGctgtggaggcggagcgcgGG
CACTTCATCAGCCGCACAGAGGAGCTCACGCGGGAGAATCAAAGCTTGAG
ACGCTTCGTGGACGAACACGCgttggaaatggaggcgAAGCGCGTCTTGG
TCCGGCAGGCGGATGAGCTGAaggtggccttggcggaggagcgggccgAG
GCCAGTGGGCTCCGAGCTATCACCACCCATCAAGCCGCCGAGCTCAAGGA
AGCTCGGGCGCAATGGTCTCAGCTCCAAGAACAATTGAAAGCacgggagg
acgaggcgaagCGGCTCTCGGAGCAGGTTTTGGCCCCCTTGGGGGCGGAC
GAAGCCCGGGAAGGGCGCCTGGCCGAGCTGACCCGGCAACTGGAGGAAGC
tcagggagagaaagagggcctGGGCGCCTTCCAAACCTCTCTCTTTCAGG
AGACAGAGTCACTCACGGCGGCCTACGAAAAGCTTTCCGAGAGCACCCAG
CGACTCAagcagcaggtggaggagaaggagaagcggaaCAATCGCCTGCA
GGATGAGCTGTTGAAGTCCAAGGCTACCGAACAGATGCAAGTAGAGCGGG
CATCGGCGCTGGAAAGACGACAGCAGGACTTCGAGAGGCTGCGGCTTGAA
CAAGCAGCGACAGTGAAGGAGTTACAGGAGCTGGTAGAGCTGTTGCGGAC
CCAATGTGCGGGGCTGGCGCAGACGAGGAGAGAgaccgaggaaggggcgc
aGGCGGACGCGGAGAAGCTGCATCAGGCCCAGCGGGAGGCAGACGAGGCC
GCGCAAAGCCTGCGGGAGTTCCAAAACAAGCTGCTGGCGATGACGAGCAG
AGCGGAGGACTTGAGCCGCGAGCTGGACaaagtggagagggaaaggttCT
TGctgcgggaagaggtgggcTCCCTGACTCGAAAATTACAGAAGGTGCAA
GTCAAAATTGAGCCTACACAAGGAGCGGGTGCCGGAGGCATGGGATTAAA
TTCTGCCACAGGTGGTGGCCGGGAGGCAGCGCAAAACGAGACACTTCTAA
AGTTGTTGAATTGCTCTGTCTGCAACGTCCGCTGGAAGGATTGTGTTATT
ACCAAGTGCTACCATCTTTTCTGCCAGCCTTGCATTCAGAGCAACCTGAA
AGTGCGTAGTCGAAAATGTCCAGCCTGTGGGAAACATTTTTCAGAGAATG
ATGTGAAGCCAATTTTCCTGACCTAA back to top
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