rna5718, rna5718 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5718
Unique Name	rna5718
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	792
Alignment location	CM002466.1:661956..664976 -

Link to JBrowse

Properties


Property Name	Value
Product	enhancer of mrna-decapping protein 4
Orig transcript id	gnl\|cribi\|Naga_100186g5.5612.mrna
Orig protein id	gnl\|cribi\|Naga_100186g5.5612
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:661956..664976 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100186g5	gene5523	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24973.1	cds5703	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5718	rna5718-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:661956..664976-
coding sequence from alignment at CM002466.1:661956..664976-

mRNA sequence

>rna5718 ID=rna5718|Name=rna5718|organism=Nannochloropsis gaditana|type=mRNA|length=792bp
ATGACCACACATATGAAGGCGCAACAATCGGTCCCAGTTCCGTCCATCTG
GTCTACTGAAGGAGCAGCCCGCCTTGGTTCAGGAGCAACAGTAACGACAA
GTCACGACGATGGCAGTATCGACCATGGTGTCACACAAGCACCCTACGAG
CGCCGCTTCTCTCCATACGACTTCAACGGCGGTACGTGCCTCGCTATCGC
AGGCAAGGACTTCGCTGTGGTCGCAGGAGATACGCGCCTTAGCACGGGCT
ATGAGATTTTGTCCCGGAACGTCCCCAAGCTATGCAAACTTACAAGCAAG
ACAGTGCTAGCCTCGGCAGGTTGTCTTACGGACGTGCGGACCCTCCAACA
GGTGCTTGACATGCGCCTCCGCATGTACGAGCACGACAACGGGAAGGAAA
TCAGCACGCCCGCCGTCGCGCAACTCTTGGGGAACACACTCTACTACAGG
CGATTTTTCCCTTACTATGCCTTCAACGTCTTGGCGGGGGTGGATGACGA
GGGTAAAGGCTGCGTCTTCTCCTATGACGCGGTGGGCTCGCATGAACGGG
TTGAATACTCGGCCAGCGGGTCGGGGCAGGCGTTCGTCATCCCCGTGATG
GACAACATCGTGGGCTTCAAGAACAGACAGGACCCGAAGCCCGAGTACAC
TGCCGCGGACATCGTGGCGATTTGCAAGGACGCCTTTTTGACGGCGGGCG
AGCGCGACATCTACACTGGAGATGCCGTTACCATAAGCGTCATTACCGCG
GCCGGCGTAACCACTGAGACGTTTGAGTTAAAACGCGACTAG

protein sequence of rna5718

>rna5718-protein ID=rna5718-protein|Name=rna5718|organism=Nannochloropsis gaditana|type=polypeptide|length=1006bp
MDNFNSFFQTLSRGRAGNEKSSGGGETSGATQAPAPLQGLSAAVTTTTIT
RSSSQSKAGPLPSSSLSSASSSSSSAAAARSGDDEGASGIVAGMEVNTPS
FTFSTPQDGLPHPQCTPIAFYNSEAPYGSGRLIAVSDAYICYAIKDGHIR
GINRQTVQRTLLKGHKKPIIDMAFASRSTCMLGSLGGDGSFYLWTITESA
ADKSLTSVPLLAVTGVDLQRVVWHPKQVHMLAVVAPKGEIALINTQKLIQ
QRGGRVGDPAKVVAATGLADLMPEWCLTAANQCLDLSFSKDGKYLVTAGE
DGWVRVWEVESQVAMGRWQPYRGEPVSRALFLHRTGGPATGEKVFVVTGG
KQASEIKLFRAWTTLSPINTQTLTFAPPPPDRDAGRGTRAFHLEVDQTGE
FLLLADAARPLLYVAHVVLGPSTAKVDRLTPYQLKHPVLSLSALEGVGVD
AHEGRSGRSGASEIHAYCVQTQAIQFYHLRPKDCLPSASTLPNTGSADAT
APVGRSEPPSPNPSPPSQPPAILQMLMQASQAAGSSSSTTDPLKAQSLAS
GSGRRAWEAASTHSVAASGTEERQTGGTHTTEEKILGNANAGGGGEDAGE
ASGGQSGQAASGQASQDVGGASLPLSRSPSEGSSATPVVSVHTPSSGRAP
ARRTLSGEGSGRKGAPEPGGRADMEAGMGEVVSRRTKEAIAEAMGGVEER
IARAIKSVIAAELGDVPGQVKGAVVAGLGQAVKDPISSSFKQCFQDMLIP
AMQSTTQRMFAQMKEGLSKNIAAARSDAGPGQGLNGAGAAALTEVKGELA
QVRTELASFSSALGALSAQLSALSSRMENGDTVGFAGGFGGGWLGRGAGR
GGSEAVPAASASIVPGGRKEELLRDVRAGRFEDVFVSVLSSQDLDLLLWL
CSEAPKDDIFDSEPPMLSQPTMFCLLQQLTFQLGKHTAQKLEWMQELVLA
VDPKDAVIGSYLGEVCPELIRNFNEAAPEVAALGHPQLVKDFKMVQKAIQ
NLARGS

mRNA from alignment at CM002466.1:661956..664976-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5718 ID=rna5718|Name=rna5718|organism=Nannochloropsis gaditana|type=mRNA|length=3021bp|location=Sequence derived from alignment at CM002466.1:661956..664976- (Nannochloropsis gaditana)
ATGGACAATTTTAACTCCTTCTTTCAAACTTTGTCGCGTGGACGCGCTGG
CAACGAAAAATCGTCGGGGGGAGGGGAGACTTCGGGCGCAACGCAGGCAC
CTGCTCCATTGCAGGGGCTAAGTGCCGCGGTCACCACCACTACCATCACT
CGAAGCTCCTCCCAAAGCAAGGCCGGGCCACTGCCGTCATCATCCCTGTC
AAGTGCCTCGAGTTCTTCATCCTCAGCGGCCGCTGCCAGAAGTGGAGATG
ACGAAGGTGCTTCGGGTATTGTAGCAGGCATGGAAGTGAACACCCCGTCA
TTCACTTTCTCCACTCCCCAGGACGGGTTGCCGCATCCGCAGTGCACTCC
TATAGCCTTCTACAATTCTGAAGCTCCCTATGGGAGCGGTCGGCTAATCG
CAGTCTCCGATGCGTACATATGTTACGCCATCAAGGACGGCCACATCCGA
GGGATCAATCGGCAGACGGTGCAGCGCACTTTACTCAAGGGTCATAAGAA
ACCCATCATTGACATGGCATTCGCGAGCCGGTCTACGTGTATGCTCGGGT
CTTTGGGTGGAGACGGCTCTTTTTACCTGTGGACAATCACGGAATCGGCC
GCAGACAAAAGCTTGACGTCGGTGCCCCTTTTGGCCGTAACAGGAGTGGA
TCTGCAGCGGGTCGTCTGGCATCCCAAGCAAGTACACATGCTAGCCGTGG
TGGCTCCCAAGGGAGAAATTGCCTTGATCAACACCCAAAAGCTTATTCAG
CAGAGAGGGGGCCGGGTCGGAGATCCCGCCAAAGTAGTCGCGGCCACAGG
ACTTGCTGACCTGATGCCGGAGTGGTGCCTGACGGCCGCAAACCAGTGCT
TGGACCTGAGTTTTTCCAAGGACGGGAAGTACCTGGTCACAGCCGGGGAA
GACGGCTGGGTCCGTGTGTGGGAAGTGGAGTCTCAGGTGGCGATGGGGCG
ATGGCAGCCATACCGGGGGGAGCCGGTCTCCCGGGCCTTGTTTTTACACC
GGACAGGGGGGCCGGCGACCGGGGAGAAGGTCTTCGTGGTCACGGGCGGG
AAGCAAGCGAGCGAGATCAAGCTTTTCCGGGCCTGGACCACGCTCTCGCC
CATCAACACCCAGACACTGACCTTCGCCCCTCCCCCCCCCGACCGGGACG
CGGGCAGGGGCACTCGCGCTTTCCACTTGGAGGTGGACCAGACGGGGGAG
TTCCTGTTGCTCGCCGACGCCGCCCGGCCTTTGCTCTACGTCGCCCACGT
GGTGTTGGGACCTAGCACGGCCAAAGTGGACCGACTGACCCCCTACCAAT
TGAAACACCCCGTGCTGAGTCTGTCGGCACTCGAGGGGGTGGGGGTGGAC
GCTCACGAAGGCCGGTCGGGCCGGTCGGGGGCCTCTGAGATCCATGCGTA
CTGTGTGCAAACGCAAGCGATCCAATTTTACCACCTGCGGCCGAAAGACT
GCCTGCCAAGCGCCAGCACCCTTCCCAACACCGGCTCTGCGGATGCCACT
GCTCCCGTAGGACGCTCCGAGCCGCCCTCCCCGAACCCCTCACCTCCGTC
GCAGCCGCCTGCCATCCTCCAAATGCTCATGCAAGCCAGCCAGGCGGCAG
GAAGCAGCAGCAGCACGACCGACCCTCTGAAGGCCCAGTCCTTGGCTTCG
GGGAGTGGGCGCCGGGCATGGGAGGCAGCGAGCACACATAGCGTGGCGGC
GTCAGGCACGGAGGAGAGGCAGACAGGCGGGACGCATACGACCGAGGAGA
AGATCCTGGGCAATGCAAACGCCGGTGGGGGTGGGGAGGATGCGGGGGAG
GCGAGCGGGGGACAGAGCGGGCAGGCGGCTTCGGGCCAAGCGAGTCAAGA
CGTTGGGGGGGCATCGCTTCCTCTCTCTCGATCTCCGTCGGAGGGGTCCT
CCGCGACACCCGTCGTTTCAGTCCACACGCCGTCCAGCGGGCGGGCGCCT
GCAAGACGGACGCTTTCGGGCGAGGGAAGCGGGAGGAAAGGGGCACCGGA
GCCTGGGGGAAGGGCCGATATGGAGGCAGGGATGGGGGAGGTGGTAAGCC
GGAGGACCAAGGAGGCGATTGCCGAGGCCATGGGGGGGGTGGAGGAGAGA
ATTGCGAGGGCAATCAAAAGCGTGATTGCGGCAGAGCTGGGCGACGTCCC
GGGTCAAGTCAAAGGGGCAGTCGTGGCGGGGCTGGGCCAGGCGGTGAAAG
ATCCCATCAGCAGCTCTTTCAAGCAGTGCTTCCAAGACATGTTGATACCG
GCCATGCAAAGCACGACGCAACGGATGTTCGCGCAGATGAAGGAGGGTCT
GAGCAAGAACATCGCTGCCGCACGATCCGATGCAGGGCCGGGGCAGGGCC
TGAACGGCGCGGGAGCCGCGGCGCTGACCGAGGTCAAGGGCGAGTTGGCT
CAGGTGCGCACCGAGCTAGCCTCGTTCTCGTCGGCGCTGGGAGCCCTCTC
CGCTCAACTATCAGCGCTAAGTTCTCGCATGGAGAACGGTGACACCGTGG
GGTTTGCGGGCGGCTTTGGGGGGGGATGGCTTGGGAGGGGGGCTGGCAGG
GGGGGGTCGGAGGCGGTCCCCGCCGCGTCCGCTTCGATCGTCCCCGGGGG
GCGTAAAGAGGAATTGCTGCGCGATGTACGGGCAGGACGTTTCGAGGACG
TTTTTGTCAGCGTGCTCTCCTCTCAGGACCTGGACCTGCTCCTCTGGCTC
TGCTCGGAAGCCCCCAAGGACGACATCTTTGACTCTGAACCACCCATGCT
CTCTCAGCCTACCATGTTTTGCCTTCTACAGCAGCTGACTTTCCAGCTGG
GGAAACACACAGCACAGAAACTTGAATGGATGCAAGAGTTGGTCCTGGCG
GTTGATCCCAAGGACGCGGTTATCGGTTCGTATCTTGGGGAGGTGTGTCC
AGAACTCATCAGGAACTTCAACGAGGCGGCACCTGAAGTGGCAGCGTTGG
GTCACCCCCAGCTTGTAAAAGACTTTAAAATGGTTCAGAAAGCAATTCAA
AACCTGGCTCGGGGTTCCTGA

Coding sequence (CDS) from alignment at CM002466.1:661956..664976-

>rna5718 ID=rna5718|Name=rna5718|organism=Nannochloropsis gaditana|type=CDS|length=3021bp|location=Sequence derived from alignment at CM002466.1:661956..664976- (Nannochloropsis gaditana)
ATGGACAATTTTAACTCCTTCTTTCAAACTTTGTCGCGTGGACGCGCTGG
CAACGAAAAATCGTCGGGGGGAGGGGAGACTTCGGGCGCAACGCAGGCAC
CTGCTCCATTGCAGGGGCTAAGTGCCGCGGTCACCACCACTACCATCACT
CGAAGCTCCTCCCAAAGCAAGGCCGGGCCACTGCCGTCATCATCCCTGTC
AAGTGCCTCGAGTTCTTCATCCTCAGCGGCCGCTGCCAGAAGTGGAGATG
ACGAAGGTGCTTCGGGTATTGTAGCAGGCATGGAAGTGAACACCCCGTCA
TTCACTTTCTCCACTCCCCAGGACGGGTTGCCGCATCCGCAGTGCACTCC
TATAGCCTTCTACAATTCTGAAGCTCCCTATGGGAGCGGTCGGCTAATCG
CAGTCTCCGATGCGTACATATGTTACGCCATCAAGGACGGCCACATCCGA
GGGATCAATCGGCAGACGGTGCAGCGCACTTTACTCAAGGGTCATAAGAA
ACCCATCATTGACATGGCATTCGCGAGCCGGTCTACGTGTATGCTCGGGT
CTTTGGGTGGAGACGGCTCTTTTTACCTGTGGACAATCACGGAATCGGCC
GCAGACAAAAGCTTGACGTCGGTGCCCCTTTTGGCCGTAACAGGAGTGGA
TCTGCAGCGGGTCGTCTGGCATCCCAAGCAAGTACACATGCTAGCCGTGG
TGGCTCCCAAGGGAGAAATTGCCTTGATCAACACCCAAAAGCTTATTCAG
CAGAGAGGGGGCCGGGTCGGAGATCCCGCCAAAGTAGTCGCGGCCACAGG
ACTTGCTGACCTGATGCCGGAGTGGTGCCTGACGGCCGCAAACCAGTGCT
TGGACCTGAGTTTTTCCAAGGACGGGAAGTACCTGGTCACAGCCGGGGAA
GACGGCTGGGTCCGTGTGTGGGAAGTGGAGTCTCAGGTGGCGATGGGGCG
ATGGCAGCCATACCGGGGGGAGCCGGTCTCCCGGGCCTTGTTTTTACACC
GGACAGGGGGGCCGGCGACCGGGGAGAAGGTCTTCGTGGTCACGGGCGGG
AAGCAAGCGAGCGAGATCAAGCTTTTCCGGGCCTGGACCACGCTCTCGCC
CATCAACACCCAGACACTGACCTTCGCCCCTCCCCCCCCCGACCGGGACG
CGGGCAGGGGCACTCGCGCTTTCCACTTGGAGGTGGACCAGACGGGGGAG
TTCCTGTTGCTCGCCGACGCCGCCCGGCCTTTGCTCTACGTCGCCCACGT
GGTGTTGGGACCTAGCACGGCCAAAGTGGACCGACTGACCCCCTACCAAT
TGAAACACCCCGTGCTGAGTCTGTCGGCACTCGAGGGGGTGGGGGTGGAC
GCTCACGAAGGCCGGTCGGGCCGGTCGGGGGCCTCTGAGATCCATGCGTA
CTGTGTGCAAACGCAAGCGATCCAATTTTACCACCTGCGGCCGAAAGACT
GCCTGCCAAGCGCCAGCACCCTTCCCAACACCGGCTCTGCGGATGCCACT
GCTCCCGTAGGACGCTCCGAGCCGCCCTCCCCGAACCCCTCACCTCCGTC
GCAGCCGCCTGCCATCCTCCAAATGCTCATGCAAGCCAGCCAGGCGGCAG
GAAGCAGCAGCAGCACGACCGACCCTCTGAAGGCCCAGTCCTTGGCTTCG
GGGAGTGGGCGCCGGGCATGGGAGGCAGCGAGCACACATAGCGTGGCGGC
GTCAGGCACGGAGGAGAGGCAGACAGGCGGGACGCATACGACCGAGGAGA
AGATCCTGGGCAATGCAAACGCCGGTGGGGGTGGGGAGGATGCGGGGGAG
GCGAGCGGGGGACAGAGCGGGCAGGCGGCTTCGGGCCAAGCGAGTCAAGA
CGTTGGGGGGGCATCGCTTCCTCTCTCTCGATCTCCGTCGGAGGGGTCCT
CCGCGACACCCGTCGTTTCAGTCCACACGCCGTCCAGCGGGCGGGCGCCT
GCAAGACGGACGCTTTCGGGCGAGGGAAGCGGGAGGAAAGGGGCACCGGA
GCCTGGGGGAAGGGCCGATATGGAGGCAGGGATGGGGGAGGTGGTAAGCC
GGAGGACCAAGGAGGCGATTGCCGAGGCCATGGGGGGGGTGGAGGAGAGA
ATTGCGAGGGCAATCAAAAGCGTGATTGCGGCAGAGCTGGGCGACGTCCC
GGGTCAAGTCAAAGGGGCAGTCGTGGCGGGGCTGGGCCAGGCGGTGAAAG
ATCCCATCAGCAGCTCTTTCAAGCAGTGCTTCCAAGACATGTTGATACCG
GCCATGCAAAGCACGACGCAACGGATGTTCGCGCAGATGAAGGAGGGTCT
GAGCAAGAACATCGCTGCCGCACGATCCGATGCAGGGCCGGGGCAGGGCC
TGAACGGCGCGGGAGCCGCGGCGCTGACCGAGGTCAAGGGCGAGTTGGCT
CAGGTGCGCACCGAGCTAGCCTCGTTCTCGTCGGCGCTGGGAGCCCTCTC
CGCTCAACTATCAGCGCTAAGTTCTCGCATGGAGAACGGTGACACCGTGG
GGTTTGCGGGCGGCTTTGGGGGGGGATGGCTTGGGAGGGGGGCTGGCAGG
GGGGGGTCGGAGGCGGTCCCCGCCGCGTCCGCTTCGATCGTCCCCGGGGG
GCGTAAAGAGGAATTGCTGCGCGATGTACGGGCAGGACGTTTCGAGGACG
TTTTTGTCAGCGTGCTCTCCTCTCAGGACCTGGACCTGCTCCTCTGGCTC
TGCTCGGAAGCCCCCAAGGACGACATCTTTGACTCTGAACCACCCATGCT
CTCTCAGCCTACCATGTTTTGCCTTCTACAGCAGCTGACTTTCCAGCTGG
GGAAACACACAGCACAGAAACTTGAATGGATGCAAGAGTTGGTCCTGGCG
GTTGATCCCAAGGACGCGGTTATCGGTTCGTATCTTGGGGAGGTGTGTCC
AGAACTCATCAGGAACTTCAACGAGGCGGCACCTGAAGTGGCAGCGTTGG
GTCACCCCCAGCTTGTAAAAGACTTTAAAATGGTTCAGAAAGCAATTCAA
AACCTGGCTCGGGGTTCCTGA

Synonyms

Publications