rna5713, rna5713 (mRNA) Nannochloropsis gaditana

Overview
Namerna5713
Unique Namerna5713
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length714
Alignment locationCM002466.1:645789..646994 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100122g1.3562.mrna
Orig protein idgnl|cribi|Naga_100122g1.3562
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:645789..646994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100122g1gene5518Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24975.1cds5698Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5713rna5713-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5713 ID=rna5713|Name=rna5713|organism=Nannochloropsis gaditana|type=mRNA|length=714bp
ATGTGCCACGCCGCCGGGCCCGACCTCAAACCATTGAATGCAATCACAAT
AAAGCCACGGTTCATTGCCCGGCAAAATTCTCAGCTTCACATTTGGTTAC
TGGCCATGCGCTTCGTAGGAGGAGGGGTGCTTCTGTTACCCCTCGTAGCT
TTCTTGATCGCGCAAATGCACCAAGTTAATGCGTTCATGGCATATCGTCC
GATCTCTCTCACTACATATGTGGATAGCACTCCGCACGCTCGTTCTTTTG
CCCGCACGAGCGTCGTGGTCAAGCCAACTTTGATCGTCCACCACACGGGG
GGGGAGCTGCCCGCGGATGAAAAGGCGGCGTTTTTGGCAGAGGCCTCGAA
GACCGTAAGTGTAACGCTAGGCAAAGCAGAGAGCTATGTCATGGTATCGG
TGTGCCCAAGCTCGATGTCTTTTGCCGGTCAGCCTGGCAACGCTGCATTT
CTCTACCTTGCCAGCATTGGGCATATTGGACCAGAGACCAATAAACCAGC
CGCTAAAGAGCTTACCGCTTTGGTAGAGAAGCACATGGGCATTCCTGCCA
ACAGAGTCTTCATTCAATTTTCTGACGCAGCGGCTGCAAACTTTGCATGG
CAGGGAAACACGGATAGGGCTTTACAAAATAGACACAAAAAGCGTCAAAA
TGACGTCATGGTCGAGTATTTCATTGCAACTGAGTTTTTTTTTCTCAAGC
TAGCTGTCGCGTGA
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protein sequence of rna5713

>rna5713-protein ID=rna5713-protein|Name=rna5713|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MGEGGVHVNGTAATGGGGGEERGGRGWGEGYRRSTRDRKRRIHDDEDGGQ
VEEAGGFGGQAREGDAGLLGGPRGPGTSGGEGQSKRPRRESRRGRRYGDE
EEEEEEEEEGDEEEEEEEDEKEKYPIGHPPARTYPRSERLATSQAMAASL
RETRAGATASPDLRRSSRRGLAPSSSSAATSLFGSEQRGQPLRYVVSSHG
PGDEHTLRVRLRPVTEDLAADREEKGGGTGGGDDRPEGGRNRGGLMLRRV
RSRLRDDGEGNGPASLAPAADRGGTGREGYVEPPLERLQAVIGRLLDEVA
AADDYQILPSISVGRDGENMNGGGPRRSGRTGGSGNGAVTWTGILARNER
PGGYDSVEEVETEVRLLLQGLVRSHETIYVAEGRRILNDLPRMMREALDE
A
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mRNA from alignment at CM002466.1:645789..646994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5713 ID=rna5713|Name=rna5713|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp|location=Sequence derived from alignment at CM002466.1:645789..646994- (Nannochloropsis gaditana)
ATGGGAGAGGGTGGGGTGCACGTGAATGGAACCGCGGCGACGGGCGGCGG
AGGCGGGGAGGAGCGGGGAGGGAGGGGTTGGGGGGAGGGATATCGTCGTA
GTACCCGGGATCGAAAGCGCCGGATTCACGACGATGAAGACGGAGGGCAG
GTGGAAGAGGCTGGAGGCTTTGGAGGACAGGCACGTGAAGGGGACGCCGG
TCTACTGGGGGGTCCAAGGGGACCTGGTACGAGTGGGGGAGAGGGCCAGT
CAAAGCGCCCGCGCCGGGAAAGTCGACGAGGCCGCCGGTACGGGGACGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGATGAGGAGGAGGAGGAGGA
GGAGGATGAGAAGGAGAAATATCCGATTGGTCACCCGCCGGCCCGCACGT
ATCCCCGGAGCGAGCGGCTGGCAACAAGCCAAGCCATGGCTGCCTCCTTG
CGCGAGACACGGGCGGGCGCGACGGCCAGCCCTGATCTCCGGCGTAGCAG
CCGTCGTGGGCTTGCCCCTTCCTCTTCGTCGGCCGCCACCTCCCTCTTCG
GTTCGGAGCAGCGAGGGCAGCCCTTAAGGTATGTCGTCAGCTCCCACGGC
CCTGGCGACGAGCACACCTTACGGGTGCGTCTCAGGCCCGTCACAGAGGA
CTTGGCGGCCGATCGGGAGGAGAAGGGGGGTGGGACTGGTGGGGGAGACG
ACAGGCCCGAGGGGGGACGGAACAGGGGAGGTCTTATGCTGCGACGAGTG
CGCTCGAGGTTAAGGGATGACGGCGAGGGCAATGGGCCGGCCTCATTGGC
CCCCGCGGCGGACAGGGGAGGCACAGGGAGGGAAGGCTATGTGGAGCCTC
CTCTCGAGCGGTTGCAGGCTGTTATTGGAAGACTGCTCGATGAAGTGGCG
GCAGCCGACGATTACCAGATCCTGCCATCCATTTCCGTAGGCAGGGACGG
GGAAAATATGAACGGAGGCGGTCCTCGAAGGAGTGGGAGGACAGGGGGCT
CGGGAAATGGCGCTGTGACGTGGACAGGTATTCTTGCGCGCAATGAACGC
CCAGGGGGGTATGACTCAGTGGAGGAGGTGGAAACAGAGGTACGACTGCT
ACTGCAGGGACTGGTCCGTAGTCATGAAACCATCTATGTGGCGGAAGGAC
GGCGTATACTCAATGATTTGCCACGGATGATGAGGGAAGCTCTAGATGAG
GCGTAG
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Coding sequence (CDS) from alignment at CM002466.1:645789..646994-

>rna5713 ID=rna5713|Name=rna5713|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002466.1:645789..646994- (Nannochloropsis gaditana)
ATGGGAGAGGGTGGGGTGCACGTGAATGGAACCGCGGCGACGGGCGGCGG
AGGCGGGGAGGAGCGGGGAGGGAGGGGTTGGGGGGAGGGATATCGTCGTA
GTACCCGGGATCGAAAGCGCCGGATTCACGACGATGAAGACGGAGGGCAG
GTGGAAGAGGCTGGAGGCTTTGGAGGACAGGCACGTGAAGGGGACGCCGG
TCTACTGGGGGGTCCAAGGGGACCTGGTACGAGTGGGGGAGAGGGCCAGT
CAAAGCGCCCGCGCCGGGAAAGTCGACGAGGCCGCCGGTACGGGGACGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGATGAGGAGGAGGAGGAGGA
GGAGGATGAGAAGGAGAAATATCCGATTGGTCACCCGCCGGCCCGCACGT
ATCCCCGGAGCGAGCGGCTGGCAACAAGCCAAGCCATGGCTGCCTCCTTG
CGCGAGACACGGGCGGGCGCGACGGCCAGCCCTGATCTCCGGCGTAGCAG
CCGTCGTGGGCTTGCCCCTTCCTCTTCGTCGGCCGCCACCTCCCTCTTCG
GTTCGGAGCAGCGAGGGCAGCCCTTAAGGTATGTCGTCAGCTCCCACGGC
CCTGGCGACGAGCACACCTTACGGGTGCGTCTCAGGCCCGTCACAGAGGA
CTTGGCGGCCGATCGGGAGGAGAAGGGGGGTGGGACTGGTGGGGGAGACG
ACAGGCCCGAGGGGGGACGGAACAGGGGAGGTCTTATGCTGCGACGAGTG
CGCTCGAGGTTAAGGGATGACGGCGAGGGCAATGGGCCGGCCTCATTGGC
CCCCGCGGCGGACAGGGGAGGCACAGGGAGGGAAGGCTATGTGGAGCCTC
CTCTCGAGCGGTTGCAGGCTGTTATTGGAAGACTGCTCGATGAAGTGGCG
GCAGCCGACGATTACCAGATCCTGCCATCCATTTCCGTAGGCAGGGACGG
GGAAAATATGAACGGAGGCGGTCCTCGAAGGAGTGGGAGGACAGGGGGCT
CGGGAAATGGCGCTGTGACGTGGACAGGTATTCTTGCGCGCAATGAACGC
CCAGGGGGGTATGACTCAGTGGAGGAGGTGGAAACAGAGGTACGACTGCT
ACTGCAGGGACTGGTCCGTAGTCATGAAACCATCTATGTGGCGGAAGGAC
GGCGTATACTCAATGATTTGCCACGGATGATGAGGGAAGCTCTAGATGAG
GCGTAG
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Synonyms
Publications