rna5709, rna5709 (mRNA) Nannochloropsis gaditana

Overview
Namerna5709
Unique Namerna5709
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1331
Alignment locationCM002466.1:640414..640834 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100122g4.3574.mrna
Orig protein idgnl|cribi|Naga_100122g4.3574
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:640414..640834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100122g4gene5515Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5709rna5709-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24987.1cds5694Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5709 ID=rna5709|Name=rna5709|organism=Nannochloropsis gaditana|type=mRNA|length=1331bp
AACAGCCCCTCTGCCGCTTGGCAGTTTCGTCTCCAAACCGTAGCCCATCA
TGCAGTCCGTCTCCTCTACTTCCACTTCATCCATGCCATCGTGCCTCCCC
CATTCCCACCTTCAAGACGCACCAGCACGTGGATGGTGTCTGCAGGACTT
CGAAATCGGGCGTCCGCTTGGACGGGGCAAGTTTGGAATGGTCTATTTGG
CGCGAGAGCGGCGAAGTAAGTACGTGGTAGCCTTGAAGGTATTACGCAAA
TCTCAACTTCTTAAAGGCGGGGTAGAGCATCAACTACGTCGCGAAATCGA
GATCCAGACACATCTAAGGCACCGGAATATTTTGCGAATGTTTGGCTATT
TCTTTGACGAACGCCGAATATATTTGATTTTAGAATATGCCCCGCGAGGG
GAGCTGTACAAGCAATTGACCTCAAAAGGCAAATTCTCCGAGCGCCTGTC
CGCCCGATACCTGCTGGAGTTGTCTGAAGCTCTCGCTTTTTGTCACACCA
AACACGTTATCCATCGTGATATCAAGCCAGAGAACTTGCTGGTAGGCCAC
AAAGGGGAGCTGAAAATCGCGGATTTCGGGTGGTCGGTACATGCCCCCTC
CTCGAAACGGAATACCTTGTGCGGAACGCTGGACTACTTGCCTCCAGAGA
TGATCGAAGGCCGCGCACACGATGCCATGGTCGATGTATGGAGCCTCGGC
GTTTTGCTATACGAGTTTTTGGTAGGCCACCCACCCTTCGAGGCTGAAGG
GCATTCGGCGACCTATCGGCGTATTGCGCGGGTTGACTTGCACTTTCCCT
CCTGGGTGTCGGAGGGAGCGCAAGATCTCATATCCCGCTTATTAAAGAAA
GATCCCCGCGTTCGAATGTCCCTGGTAGAAATTTCGCAGCACCCATGGAT
CGTTGAACAAACCGGAGACAGGGTGCTGCCGTCCGAGCCGCCGTCGAAAG
CAGAGAAAGCCGAATTTCCTCCACTTGCGTCGGGGATGCCAGCAACCATG
TCTGTGTGTTAGACTACTTGAATCGCCCCATGCTCGACATGAGCCAGTCA
TGGGAATTCAATCACCTCCTCTGGTCTCTGGCTGAGCAAATCCGGGGGAC
GGCTTCAGGTCATATCACAAGCTACGACGCAGCCTTTTTGTTATAGTTGC
ATAATTCATGCCAAGTAATTGAATTCACGGAAGTCTCAGGCACCTTTTTT
TTTCTTCGATCCTGCATGTGTGCGCCCTCCCACTTATTCTGTCCACTTCC
CACAAAATTGCACGCCATCCTTTCTCCCGCGTCAGATTAAGAGCTTGCTC
ACGTCCACGTCAATGGCCTCCGTGCCTTTCT
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protein sequence of rna5709

>rna5709-protein ID=rna5709-protein|Name=rna5709|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MKRYCSAFVFVPFFLVVACLLSVAMANDAGGGHKKLGEGFTDFTVPRRPA
ATVGESLGFVALVVGVLALAGVTTHFKLKSSPNGLPGYSQAKTRRVRAVY
NEVKISRSQKSRADSLIDEWCTN
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mRNA from alignment at CM002466.1:640414..640834+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5709 ID=rna5709|Name=rna5709|organism=Nannochloropsis gaditana|type=mRNA|length=421bp|location=Sequence derived from alignment at CM002466.1:640414..640834+ (Nannochloropsis gaditana)
ATGAAGCGTTACTGTTCAGCCTTTGTATTTGtgccctttttcctcgtcgt
cgcgTGTCTACTTTCCGTTGCCATGGCCAATGAtgctgggggggggcaca
aAAAGCTTGGGGAGGGCTTCACGGATTTCACAGTGCCGAGGAGACCAGCA
GCCACGGTGGGAGAAAGCTTGGGTTTCGTGGCCTTGGTTGTGGGCGTCCT
CGCTCTGGCGGGAGTAACCACTCATTTCAAGCTAAAAAGCAGTCCAAATG
GCTTGCCAGGATACTCACAGGCTGTTTACATGCGCGAGCAACAATGAAAG
GCAGACTGTGTAATTAGAAAAGAAGACGCGTCGGGTGCGGGCTGTGTACA
ACGAGGTGAAGATCTCTAGGAGTCAAAAGTCACGGGCCGACTCTCTAATC
GATGAGTGGTGTACAAACTGA
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Coding sequence (CDS) from alignment at CM002466.1:640414..640834+

>rna5709 ID=rna5709|Name=rna5709|organism=Nannochloropsis gaditana|type=CDS|length=744bp|location=Sequence derived from alignment at CM002466.1:640414..640834+ (Nannochloropsis gaditana)
ATGAAGCGTTACTGTTCAGCCTTTGTATTTGtgccctttttcctcgtcgt
cgcgTGTCTACTTTCCGTTGCCATGGCCAATGAtgctgggggggggcaca
aAAAGCTTGGGGAGGGCTTCACGGATTTCACAGTGCCGAGGAGACCAGCA
GCCACGGTGGGAGAAAGCTTGGGTTTCGTGGCCTTGGTTGTGGGCGTCCT
CGCTCTGGCGGGAGTAACCACTCATTTCAAGCTAAAAAGCAGTCCAAATG
GCTTGCCAGGATACTCACAGGCTAAGACGCGTCGGGTGCGGGCTGTGTAC
AACGAGGTGAAGATCTCTAGGAGTCAAAAGTCACGGGCCGACTCTCTAAT
CGATGAGTGGTGTACAAACTGAATGAAGCGTTACTGTTCAGCCTTTGTAT
TTGtgccctttttcctcgtcgtcgcgTGTCTACTTTCCGTTGCCATGGCC
AATGAtgctgggggggggcacaaAAAGCTTGGGGAGGGCTTCACGGATTT
CACAGTGCCGAGGAGACCAGCAGCCACGGTGGGAGAAAGCTTGGGTTTCG
TGGCCTTGGTTGTGGGCGTCCTCGCTCTGGCGGGAGTAACCACTCATTTC
AAGCTAAAAAGCAGTCCAAATGGCTTGCCAGGATACTCACAGGCTAAGAC
GCGTCGGGTGCGGGCTGTGTACAACGAGGTGAAGATCTCTAGGAGTCAAA
AGTCACGGGCCGACTCTCTAATCGATGAGTGGTGTACAAACTGA
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Synonyms
Publications