rna5708, rna5708 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5708
Unique Name	rna5708
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3283
Alignment location	CM002466.1:638669..639999 -

Link to JBrowse

Properties


Property Name	Value
Product	aurora kinase a
Orig transcript id	gnl\|cribi\|Naga_100122g5.3580.mrna
Orig protein id	gnl\|cribi\|Naga_100122g5.3580
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:638669..639999 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100122g5	gene5514	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24993.1	cds5693	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5708	rna5708-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:638669..639999-
coding sequence from alignment at CM002466.1:638669..639999-

mRNA sequence

>rna5708 ID=rna5708|Name=rna5708|organism=Nannochloropsis gaditana|type=mRNA|length=3283bp
CCAAAACTGTGAGAAAAACTAGCCCTGGACATTTATCATGCAACCCTCAT
TCTCAGCTAAATACACCGTGATACACAGCATAGCCCGGTATTATGTCTGA
AGAAGATCATAGTCCTTCGTACGTCGCGCGGCGACGTCCGCGCCCGCCTC
AGCATCCTCCTCCACCTTCGGGTGCTCCACCCCTTCATTCGGCTGCCTAC
CGCGCCAGCCGTAGAGGCCCTACGGAAGCGAAAATCGCAACCAAGCAAAG
CAGAAAAGATGCAAAAGTTGCCACACCACCATTAACTGCCGTTTCAGGGG
CAGGGTACGGAAGACAGGTGGGCCCATTAATCGCAAGCGCTGGTGATCAC
AAGAGTCAGCCTGACAAGCCTGCGTTTCCAAGTGTGCATCGTACGTTTCT
TCCAGACCCTGCCGTTCAAAGCACCGGTGCCAGCAAGCCCTCTACTGTCT
CGCTTGTCCCCACGCAAGACGACAAGCCGGAAGCCGTGGCAAGGTGCTTG
GAAACTCAGGTTCACGCGTTGCTTGAGGCTTCAGCGTTCGCATCCCGCTC
TGGGCAACTGGGGCTGGCCTTGAACAAAGCAAAAGAAGCGCAAAAGAAGG
AGCGGGCACTAACCCGCGCTCGAGAATCTAGCAACTTAGTTGACGCCATG
AACGGAGAGCTCACATACGCCGTAGCGTTGCACCTGGGCAGCATGTACGA
AGGCAATGGCATGGAGGACGAGGCCCTCCACGTGTATCGAGGTCTCTTGG
AGCAGCGGGCTCTGCTGCCGCCCGTCGCTGGGTGGGCTCGCTTGAACATG
GGAAACGTGTACTACCGGAAAGGACGCTACGCCGAGGCCGTCAAAATGTA
CCGCATGACGTTGGATCAGATTCCCAGTACGAGCCATAAGGCCATGCGCC
TGAAGGTGTATCGCAACATCGGGTACGCCTTCGTGCGGCTTCAAGAATGG
CAGGAAGCGGTGCAGGCCTTGGAAATCATCGTACTGAATCCCATCACGCA
TTTGAACGGGGAAAGAGCGGGCACGGCGGGCGAAGATGGGATGGGGGGCG
CCTTGGTGGGCAGTCAGGGCGGCGGACAGGGCGCAGGAGGGAACAAGGCG
GGCCTGTCAAGGAGCCAAGCGGACCCAACCATCGTATTGCCTTCCTCAGC
CGCTTTTTCCACCTCCCTTCTCGGCTCCCCGCGAACGGTGGTGTTCGGTG
ACTATTTCCGGACGGCATACTTGCTCTTGATGTGCTACCTGGTCCTGGGG
GAGGTGGTGAAAATGAAGCGGGCATTCGCCAAGATGGTCTCCACGCTGCC
CACGCCCTTGGAAGAGGACGAAGATATCGAGGAGGAAGCCGCGGCGGAAA
AAGAGGGAGGGGCCAGACAGGTCTGCGGACCGGGCGGTGGGGTAGAGAGG
GATGACGAGATGGAGCTATGGGAGGCTGCAGCGGGGGGACGGAGGACGCG
AAAACGAGAAACGGAGAACACAGCACGGGATGCAGAAGAGCAAGTGAAGC
CCGATTTTTTGCGCGAAGAAATGCAGCGACGACGGCAGGAGGGAGTTCGG
TACGTGCTGGCTGCAGGGAAGCTTCTTGCACCCGTTGTGGAGGCGACAGG
AGGTCGCGACGGGTATCAGTGGGTGGTGGAGGCCTTGAAGCGGGGAAACC
ACGGCGAGGTGGCCTGCTTAATGGAGCTTGAGCGCGCATCGGCCTGTGTC
CGTGAGAAGCGCTTCGACCCTGCCGTGGAGATCCTGCGGTCGTTCGAGAG
GAAAGAGATCCCGGTCAAGGCGTGGGCCGCGAGCAGTTTGTCTTTCGTTT
ATTTCTTGGAGGGGGAATTGGAGAAGGCGGAGGAGCTGGCCAACCTAGCT
GTGGAACACAACAGCTACAACGCCAGTGCCCTTGTTAATAAGGCGAACTG
CGTTTTCCAGCGGGGAGACGTGGGCGCCGCCAAAGACCTGTATTTGGAGG
CCTTAGGCGTGGAGGCAGGATGCCTCGAGGGTGAGTCGAGGGGGGAGTGT
TTCACGTCCAAGACTCCTTGTCTCGTGGCACGGGGGGTTGTACTGTAAGT
GTGTGTGCTTGGTTTGATGGACAATCAAGAGGCCGCAGAGGCCGCTAGAA
GGGGTTCCATCCGACCCCCCTGCCTCCGTCTCCTTGCATGCTCACCCGCT
ATGCTTTATTTCTTCCCGCCCTCGCCCCTCTCCTAGCCCTTTTCAACTTG
GGCGTCGCCAACCTTCGGCTCGGGCGTCTCAGTGACGCGCAAGATGCCTA
CGAGAAGCTTCACACGCTCACCCCTCATTGCCCCGAGGTCCTCTACCAGC
TCGGTCATATCGCCGAGGGCCAAGGTCAAGCGTCGGAGGCGATTCGCTGG
TTCCAAGTCTTGCTCGCGGAGTTGAGGGCGCGGGGCAAGGGGATGGGGAA
AGAGAAGATGTTGTACCAAAGAGATGGAAGGGGGGGGTCGAATAGAGGCG
TGGAGGAGGGGGGATGGACGTCGTCTTCGTCGCTGGGCTTGTCCTCCGGG
TCCTCTCTCTCCTCACCCTCGACGCCAGGAGCGGGCAGCCACACAATGAT
GGGAGGGGACCTTCCTCCCAGCACCATCGACGCGGTCAGCGGCGGGATGG
CAGCTGTGGACGACGAAGTCCTGGCACGGCTTGGTCGACTCTACGACGCG
GAGGGGGCAGAGGCGCAGGCCTTGCATCATTTCCAGGAGAGCGACCGCGT
GAATCCTTTCAATCTGGAGGTCATTTCCTGGCTGGGCCTTTGGTTCGCCC
GGCAGGAGCAGTACACGACTGCCCTCATCTACTTCCATCGAGCCGCGGTG
GTCCAACCGGACTCTTCCCGCTGGCCTCTCATGCAGGCCAGCTGCCATCG
CCGCCTCGGAGATTTCTTGCAAGCCCTGAAGATCTACGAATGTGTGCATG
CAGCGCACCCGGAGGACACAGACTGCTTGAAAGCCCTGGTCACCTTGTGT
CGGGACCTCGGACGGCCGTGGGAAGGCTACCAGCAGCGGTTGCTTAGACT
GCAGGAAGCTGGGCGGAGTGAGGGGGAAGCGTCCCGGGGGGAGGGGGCAA
GGGGTATTGGGGAAAGGGCAACGGGAGAGAGAGGAGAGCTGCGGGGCTTG
GGTCGGGACGGGCGAGGGTGGGTGTTGAAAGGGAAGAAGAAAGGCACGGA
GGCCATTGACGTGGACGTGAGCAAGCTCTTAATCTGACGCGGGAGAAAGG
ATGGCGTGCAATTTTGTGGGAAGTGGACAGAATAAGTGGGAGGGCGCACA
CATGCAGGATCGAAGAAAAAAAAAGGTGCCTGA

protein sequence of rna5708

>rna5708-protein ID=rna5708-protein|Name=rna5708|organism=Nannochloropsis gaditana|type=polypeptide|length=320bp
MQSVSSTSTSSMPSCLPHSHLQDAPARGWCLQDFEIGRPLGRGKFGMVYL
ARERRSKYVVALKVLRKSQLLKGGVEHQLRREIEIQTHLRHRNILRMFGY
FFDERRIYLILEYAPRGELYKQLTSKGKFSERLSARYLLELSEALAFCHT
KHVIHRDIKPENLLVGHKGELKIADFGWSVHAPSSKRNTLCGTLDYLPPE
MIEGRAHDAMVDVWSLGVLLYEFLVGHPPFEAEGHSATYRRIARVDLHFP
SWVSEGAQDLISRLLKKDPRVRMSLVEISQHPWIVEQTGDRVLPSEPPSK
AEKAEFPPLASGMPATMSVC

mRNA from alignment at CM002466.1:638669..639999-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5708 ID=rna5708|Name=rna5708|organism=Nannochloropsis gaditana|type=mRNA|length=1331bp|location=Sequence derived from alignment at CM002466.1:638669..639999- (Nannochloropsis gaditana)
AACAGCCCCTCTGCCGCTTGGCAGTTTCGTCTCCAAACCGTAGCCCATCA
TGCAGTCCGTCTCCTCTACTTCCACTTCATCCATGCCATCGTGCCTCCCC
CATTCCCACCTTCAAGACGCACCAGCACGTGGATGGTGTCTGCAGGACTT
CGAAATCGGGCGTCCGCTTGGACGGGGCAAGTTTGGAATGGTCTATTTGG
CGCGAGAGCGGCGAAGTAAGTACGTGGTAGCCTTGAAGGTATTACGCAAA
TCTCAACTTCTTAAAGGCGGGGTAGAGCATCAACTACGTCGCGAAATCGA
GATCCAGACACATCTAAGGCACCGGAATATTTTGCGAATGTTTGGCTATT
TCTTTGACGAACGCCGAATATATTTGATTTTAGAATATGCCCCGCGAGGG
GAGCTGTACAAGCAATTGACCTCAAAAGGCAAATTCTCCGAGCGCCTGTC
CGCCCGATACCTGCTGGAGTTGTCTGAAGCTCTCGCTTTTTGTCACACCA
AACACGTTATCCATCGTGATATCAAGCCAGAGAACTTGCTGGTAGGCCAC
AAAGGGGAGCTGAAAATCGCGGATTTCGGGTGGTCGGTACATGCCCCCTC
CTCGAAACGGAATACCTTGTGCGGAACGCTGGACTACTTGCCTCCAGAGA
TGATCGAAGGCCGCGCACACGATGCCATGGTCGATGTATGGAGCCTCGGC
GTTTTGCTATACGAGTTTTTGGTAGGCCACCCACCCTTCGAGGCTGAAGG
GCATTCGGCGACCTATCGGCGTATTGCGCGGGTTGACTTGCACTTTCCCT
CCTGGGTGTCGGAGGGAGCGCAAGATCTCATATCCCGCTTATTAAAGAAA
GATCCCCGCGTTCGAATGTCCCTGGTAGAAATTTCGCAGCACCCATGGAT
CGTTGAACAAACCGGAGACAGGGTGCTGCCGTCCGAGCCGCCGTCGAAAG
CAGAGAAAGCCGAATTTCCTCCACTTGCGTCGGGGATGCCAGCAACCATG
TCTGTGTGTTAGACTACTTGAATCGCCCCATGCTCGACATGAGCCAGTCA
TGGGAATTCAATCACCTCCTCTGGTCTCTGGCTGAGCAAATCCGGGGGAC
GGCTTCAGGTCATATCACAAGCTACGACGCAGCCTTTTTGTTATAGTTGC
ATAATTCATGCCAAGTAATTGAATTCACGGAAGTCTCAGGCACCTTTTTT
TTTCTTCGATCCTGCATGTGTGCGCCCTCCCACTTATTCTGTCCACTTCC
CACAAAATTGCACGCCATCCTTTCTCCCGCGTCAGATTAAGAGCTTGCTC
ACGTCCACGTCAATGGCCTCCGTGCCTTTCT

Coding sequence (CDS) from alignment at CM002466.1:638669..639999-

>rna5708 ID=rna5708|Name=rna5708|organism=Nannochloropsis gaditana|type=CDS|length=963bp|location=Sequence derived from alignment at CM002466.1:638669..639999- (Nannochloropsis gaditana)
ATGCAGTCCGTCTCCTCTACTTCCACTTCATCCATGCCATCGTGCCTCCC
CCATTCCCACCTTCAAGACGCACCAGCACGTGGATGGTGTCTGCAGGACT
TCGAAATCGGGCGTCCGCTTGGACGGGGCAAGTTTGGAATGGTCTATTTG
GCGCGAGAGCGGCGAAGTAAGTACGTGGTAGCCTTGAAGGTATTACGCAA
ATCTCAACTTCTTAAAGGCGGGGTAGAGCATCAACTACGTCGCGAAATCG
AGATCCAGACACATCTAAGGCACCGGAATATTTTGCGAATGTTTGGCTAT
TTCTTTGACGAACGCCGAATATATTTGATTTTAGAATATGCCCCGCGAGG
GGAGCTGTACAAGCAATTGACCTCAAAAGGCAAATTCTCCGAGCGCCTGT
CCGCCCGATACCTGCTGGAGTTGTCTGAAGCTCTCGCTTTTTGTCACACC
AAACACGTTATCCATCGTGATATCAAGCCAGAGAACTTGCTGGTAGGCCA
CAAAGGGGAGCTGAAAATCGCGGATTTCGGGTGGTCGGTACATGCCCCCT
CCTCGAAACGGAATACCTTGTGCGGAACGCTGGACTACTTGCCTCCAGAG
ATGATCGAAGGCCGCGCACACGATGCCATGGTCGATGTATGGAGCCTCGG
CGTTTTGCTATACGAGTTTTTGGTAGGCCACCCACCCTTCGAGGCTGAAG
GGCATTCGGCGACCTATCGGCGTATTGCGCGGGTTGACTTGCACTTTCCC
TCCTGGGTGTCGGAGGGAGCGCAAGATCTCATATCCCGCTTATTAAAGAA
AGATCCCCGCGTTCGAATGTCCCTGGTAGAAATTTCGCAGCACCCATGGA
TCGTTGAACAAACCGGAGACAGGGTGCTGCCGTCCGAGCCGCCGTCGAAA
GCAGAGAAAGCCGAATTTCCTCCACTTGCGTCGGGGATGCCAGCAACCAT
GTCTGTGTGTTAG

Synonyms

Publications