rna570, rna570 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna570
Unique Name	rna570
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2121
Alignment location	CM002455.1:1414522..1417672 +

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Properties


Property Name	Value
Product	NAD(P)-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100258g4.3329.mrna
Orig protein id	gnl\|cribi\|Naga_100258g4.3329
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1414522..1417672 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100258g4	gene548	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna570	rna570-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30101.1	cds570	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1414522..1417672+
coding sequence from alignment at CM002455.1:1414522..1417672+

mRNA sequence

>rna570 ID=rna570|Name=rna570|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp
TCATGCCAGGAGGGATCATATGTATCCAAGACGCGTGGGATGTTTTGCCC
GGCCATTGAACCTCCTGTACTCATGTGGTCCCAATTTCATCGAAAGCACT
GCGTTCGTCTCGCGCAAACATGATAGGGACTAAAAAATATCTAGTCTCAC
GGCTTTTATTCTTCCAAAACATTAGAGCTGTCAAAATCGCTACCTTACCC
GTGTTTAGTCTTGTCGCATCTGCAGCTACCCGCGCAGCCGCCGCCTTTGG
CACCCCTTCTCTTGCGTCGAACAACAATCGCGTTGCGCATCTTGCTGGCT
TAAATCATCGTCTATCCCCTTTGAAAACCGTTGTATATATTTCTGAACAA
GTCTCAGATACACAGAATACCATGGAATATGCCAAAGCAATGACCGAGAC
ATTGGAGCAGCACAAGCTTCCGCTTCGCAACGATCGGGACCTGGATCCTT
TGTTGGAGTCCATCGGGGACAAGCGATTTGTCTTCCTGGGAGAATCTTCG
CACGGAACACATGAGTTTTATACATGGCGGGCACATATCACGAAGCGGCT
TATTGAAGAAAAAGGTTTTAACTTTGTCGGCGTCGAGGGGGACTGGCCTG
ATTGCTACGAACTCAACCGTTACATAAAAGGATTCAAGGACTCAGCCAAG
CATCCTTCTGATGTGATGAAGGCCTATTTTAAGCGTTGGCCAGTTTGGAT
GTGGGGTAATTGGGAGGTTGCCGCTTTGACTGGCTGGATGCGTGAATTCA
ACATGAAACGTCCTGCACAAGAGCGCGTCGGCTTTTACGGTCTGGATGTG
TATTCTCTGATGGAGTCCTTAGAAGCAATTGTCAAATTCATGCGCAGTGT
AGATGGGGATGAGTCAATTAAAAGTGCCGAGCGAGCTTTGGCCTGTTTTG
AACGCGTGGCCACGATGGGGAAGGAAGACGTAGGCCAGGCGTACGGGATG
GCAGCTGCTCTTACTCCTTACTCATGTCGGAATGAGGTTGTGAAATTGCT
CGTAAAGGTGCGAGAAGAAGCCGCCAAATTGTCGGAAAGCCCCCATGACG
AGGAAGCCAATGAGAATGCTTTGAGCGCAGAATTGAATACTAAGGTGGTT
TTGGACGCGGAGAAATACTACCGGATCATGGTAGACGGAAGCGACGACTC
GTGGAATGCCCGGGACACGCACATGCACGAGACCCTCCGACGACTTTCTC
ATTTTTACGGTCCCAAGAGCAAGGCGATTATTTGGGCGCACAACACCCAC
AATGGGGATGCGCGGGCCACAGACATGGCGATGGGGGGGATGCACAACAT
TGGACAGTTGGCTCGGGAGACTTGGGGCAAGGAGCAAGTGCATCTGGTGG
GCTTGGGCACATATCAGGGAAGCGTCATGGCGGGAAAGCGGTGGGGTGCG
GATATGGAAGTCATGCCCCTGCCCCGTGGCGTCCCTGGGTCTTGGGAACA
CATTTGTCACACAGCTGGAAAAGGTCAAGATATGCTGGTGGTTCCTGAGG
TGCTACGGCAGCCTTTGTTCGAAAAACGCGTCGGACATCGCGCCGTAGGG
GTCGTCTACAATCCATCGCGGGACCGAATGCAGTACGTGCCTTCAGTGAT
GAAAGCACGCTACGACGCTTTTGTTTTCCTCGACACCACCCGGGCATTAC
ATTCGCTCAAACTTCAAGCAGATCCTACCGAAGTCCCGGAGACTTACCCG
TGGGGGGTGTAATCGACCCTTCCAGACTCAGGCCTGCACCTTGAGCGCAC
TGGATGCGTGATAAAGGACGCATACAGCAGGAGATTGGATAGGAATTTGG
AAAAAAATCTCAGATCCAGGCAGAGAAGATTCGCGCATTGCAGCGCCAAA
TGCGGTAAAAATGCTTTTGTAGAGGAAAAAGACTCTCAAAGCTAAGCATA
AGCAATGGGTGCGACGGGCGAGGAAAGCCACCAAGTCAAAACGATGATGC
ATGACAATTCATTCACGCGATGTTTTTTTGTGAAGAGGGCTCCGATGAGA
ATGTAAAAGGGAGAAGTTTATCTCACACACGTGCAAGTACAGACCGCAAG
ATGGAAAAGAGAAAAGATGAAGACAAACAAAACAAAAAGATCAGATTCGC
AATATTGCTGGAAAATGATGG

protein sequence of rna570

>rna570-protein ID=rna570-protein|Name=rna570|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MAPLKKYMQPAVVLAAATAGMTSAFLLPAMRPVPAPTTVTCAARTSPLFS
RSSTPSVTPARPTKGTILSATNFFESFFAPKSASGAGARGGKKTIVLTGT
SSGLGKATLKALCARGDNFVICGVRDMEKMQAVAEELGLDPSSYTIRPLD
LSSFASVRRFAKEVKAVKGGKPLDALVCNAAVYLPARDYPTFTPDGIEES
LQINHLSHFLLVSLLLDDLKKAKDPRCVIVGSITGNDNTIAGAFVWPRAS
LGDLKGMQEGAKEPVSMIDGKNFNGAKAYKDSKMCNMMTVNELHKRYHDA
TGITFSSMYPGCIAETALFREKRQWFRTLFPLFMKYVTGGYVSENEAGER
LAQTVWDPALKTSGQYWCWNGQAQQFGYYDPATKQVRGAGGSGGTVFPGK
LAGQVMDQAKAEKMWELSSEITGATWPSVGVRELANV

mRNA from alignment at CM002455.1:1414522..1417672+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna570 ID=rna570|Name=rna570|organism=Nannochloropsis gaditana|type=mRNA|length=3151bp|location=Sequence derived from alignment at CM002455.1:1414522..1417672+ (Nannochloropsis gaditana)
CCTGACATTGTGGTGGGACCGTGAAAATTCATTCGACATGGCCCTTGGTC
TTGGGGTCAGCTCGTTGAGTAAAAGATACTTTCTGAGAGCTTTCGATGAC
CTTGAATACGAAGGATCAGGGTTGAAAAGCATTTTCGTGTGCAACGCTCT
CGCTCGAGGGCCTTACACGGTCGGGTCACTATTGGCTGGGCCACATGAGG
AAGATTAATATCAAGTTATTGTTTAAAAGAAAAGCTTTACCCGTTTTATG
GGCTGAAAACTTTTTAAGCACTCCGGAGGCACTGGACCCACCAGATCATT
TTCACTTCAATTCTACTACTTCAGTGAGAGCCGAAGTTGGCCTCGGATGC
TTAGTTATGCGGGCGCTTTGTGAAATTGTAAAGACGTATCGAACAAAAGG
CACGTCTTTCTTAATGGAGAGAGGACAACTACAGCCTTTCTTTGGCATCC
GTTGTTACATGAACGGCAGTTGCAGTTGCCTATACAGGGTACCCTTCCAT
GAGGTTTCCTTCTTTATTCTTCTCGGTGTAATCGTCCCGTGTGAGATGTA
TTTTGTGGTAAGCTGCATGAAAGGATCAAATGTGCAACGTGAAGCACTGT
CACTCGGTCAAAGTCGAGGACTGGTGCGATTATGATGCCACCCAAGGTCT
CctggcctctccctcgctatCTTTCTGGAGCGTTTATCCGAACTTTCTCC
TTGcgttgtcctccaccccatcAAACTAGGTGTGAAAGCAAAGACTTCAG
AGAATGGCTCCATTGAAGAAGTATATGCAGCCTGCAGTGGTGCTTGCTGC
AGCCACGGCCGGCATGACGTcggccttcctgctccccgcCATGCGCCCTG
TCCCTGCCCCCACGACCGTCACCTGCGCAGCAAGGACGTCGCcgctcttc
tcccgctcttccacgccctctGTCACGCCTGCCAGGCCCACCAAAGGCAC
GATTCTGTCGGCCACCAATTTTTTCGAATCATTTTTCGCGCCCAAATCCG
CCTCTGGGGCCGGTGCCcgtgggggaaagaaaacCATCGTCCTCACTGGC
ACTTCTTCGGGCCTGGGCAAGGCGACGCTCAAAGCGCTCTGTGCCCGCGG
TGACAATTTCGTGATTTGCGGCGTCAGGGACATGGAGAAAATGCaggccg
tggcggaggaaCTGGGCTTGGACCCGTCTTCCTACACGATCCGTCCCTTG
GACCTCTCATCCTTCGCCTCGGTGAGGCGCTTCGCCAAGGAAGTGAAGGC
GGTGAAGGGCGGTAAGCCCTTGGATGCCCTGGTCTGTAACGCGGCCGTGT
ACCTGCCTGCCCGTGACTACCCGACGTTCACCCCGGATGGGATCGAAGAG
TCCCTCCAAATCAATCACctctcccacttcctcctggtTTCGCTCCTGCT
CGACGActtgaagaaggcgaaggaccCCCGCTGTGTGATCGTGGGCTCCA
TCACCGGGAACGACAACACCATCGCGGGGGCCTTCGTCTGGCCGCGAGCC
TCCTTAGGGGACTTGAAAGGGATGcaggagggggcgaaggagcCTGTCTC
GATGATCGACGGCAAGAATTTCAACGGGGCGAAAGCCTACAAGGACAGCA
AGGTAACTACCACACACGGGGTGGGAAAATGCCATGTAGACATCGAACGT
GGGATGGAGCCATGTCCGAGACCTGGACTTAACGCTGGACATGGGGGtag
agggtgagggaggcggataGTGCTCCTtggggcgacggggaggaagcggc
ggccgGGCACGGGAAATGGGTTTCGAGGATTTCCCACTGAACCTCCCTGT
GTCTGGCCTCGCGATGTGATGAGCGTGGAAGGGTCAAGAACGTGGCCCGG
TCTCAACCAAGCCGCTACGACGCCCaaccttcttcttctctaccccttcc
caccgcgATCCCTCGCACccatctctctctctccccccctctttcctccc
ctcccttccctccccctcagaTGTGCAACATGATGACCGTGAACGAGCTT
CACAAGCGGTACCATGACGCCACGGGcatcaccttctcctccatgtacCC
CGGGTGCATCGCCGAAACGGCCTTGTTTCGGGAAAAGCGACAGTGGTTCC
GgacgctcttccccctcttcatgAAGTACGTCACGGGGGGCTACGTGTCC
GAAAACGAAGCCGGCGAGCGTCTGGCCCAAACCGTGTGGGACCCGGCGTT
GAAGACGAGCGGGCAGTACTGGTGCTGGAACGGTCAGGCCCAACAGTTTG
GCTACTACGACCCTGCCACCAAACAAGTtcgaggcgcgggcgggagcGGC
GGAACCGTGTTCCCTGGGAAGTTGGCGGGGCAAGTGATGGATCAGGCCAA
GGCAGAGAAAATGTGGGAGTTGAGCTCGGAGATTACGGGGGCGACGTGGC
CGAGCGTAGGGGTCCGGGAATTGGCGAACGTgtgagggaatggaaggaat
attggggaagggaaagcgatggaagggatggaagggatggaaggaagggt
gtgGATAGATCGGACgtagggagaagaggaaggccgcgtgggaaaggcgg
gtggagggagaggcatggggaggaaggacggaggaaatgaggaggtCGGC
ATTCGGACGAGAAGTAAGCGGTggggggagtggggagaatgcggggaggt
aggggagggaggatgcgacaggaggaagatgggacctgcggggtagggga
gggacggaagagcCGCAGGCAGGAAGGCAAGCGGGggtcaggaggagaaa
gaagggaaggacgccgGGGGGTAGAGGCGGGACTCGGGCGTCAaatgggc
ggaggaggctctgcTTGAGCACAGGAAATGAAATATACACGGGGTGCAGC
ATATCCTGGCATGCCCGGGCAGGCGGTCGGGCAGGCCATGGGCGGATCGG
ATCGAGTCCGTCCCCACCCtggctcctgcctcctcttctccttttgtcAG
CGGACGTCGTGTTTCTTTCACGCGGGTCCACAAGTCGAgtttccctccac
cgcctgttccctccccccctttcacacgtccctctcacctccccctaAAC
GCGTCAGCGGCCCCCGACTTCCTCACCTTTTCCAACGCTTTCACAAGCTC
GTGTGCAGTCATTTAAAAGTCAAAGTTATCATTGTGGCCCTGTTTCTGTC
T

Coding sequence (CDS) from alignment at CM002455.1:1414522..1417672+

>rna570 ID=rna570|Name=rna570|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002455.1:1414522..1417672+ (Nannochloropsis gaditana)
ATGGCTCCATTGAAGAAGTATATGCAGCCTGCAGTGGTGCTTGCTGCAGC
CACGGCCGGCATGACGTcggccttcctgctccccgcCATGCGCCCTGTCC
CTGCCCCCACGACCGTCACCTGCGCAGCAAGGACGTCGCcgctcttctcc
cgctcttccacgccctctGTCACGCCTGCCAGGCCCACCAAAGGCACGAT
TCTGTCGGCCACCAATTTTTTCGAATCATTTTTCGCGCCCAAATCCGCCT
CTGGGGCCGGTGCCcgtgggggaaagaaaacCATCGTCCTCACTGGCACT
TCTTCGGGCCTGGGCAAGGCGACGCTCAAAGCGCTCTGTGCCCGCGGTGA
CAATTTCGTGATTTGCGGCGTCAGGGACATGGAGAAAATGCaggccgtgg
cggaggaaCTGGGCTTGGACCCGTCTTCCTACACGATCCGTCCCTTGGAC
CTCTCATCCTTCGCCTCGGTGAGGCGCTTCGCCAAGGAAGTGAAGGCGGT
GAAGGGCGGTAAGCCCTTGGATGCCCTGGTCTGTAACGCGGCCGTGTACC
TGCCTGCCCGTGACTACCCGACGTTCACCCCGGATGGGATCGAAGAGTCC
CTCCAAATCAATCACctctcccacttcctcctggtTTCGCTCCTGCTCGA
CGActtgaagaaggcgaaggaccCCCGCTGTGTGATCGTGGGCTCCATCA
CCGGGAACGACAACACCATCGCGGGGGCCTTCGTCTGGCCGCGAGCCTCC
TTAGGGGACTTGAAAGGGATGcaggagggggcgaaggagcCTGTCTCGAT
GATCGACGGCAAGAATTTCAACGGGGCGAAAGCCTACAAGGACAGCAAGa
TGTGCAACATGATGACCGTGAACGAGCTTCACAAGCGGTACCATGACGCC
ACGGGcatcaccttctcctccatgtacCCCGGGTGCATCGCCGAAACGGC
CTTGTTTCGGGAAAAGCGACAGTGGTTCCGgacgctcttccccctcttca
tgAAGTACGTCACGGGGGGCTACGTGTCCGAAAACGAAGCCGGCGAGCGT
CTGGCCCAAACCGTGTGGGACCCGGCGTTGAAGACGAGCGGGCAGTACTG
GTGCTGGAACGGTCAGGCCCAACAGTTTGGCTACTACGACCCTGCCACCA
AACAAGTtcgaggcgcgggcgggagcGGCGGAACCGTGTTCCCTGGGAAG
TTGGCGGGGCAAGTGATGGATCAGGCCAAGGCAGAGAAAATGTGGGAGTT
GAGCTCGGAGATTACGGGGGCGACGTGGCCGAGCGTAGGGGTCCGGGAAT
TGGCGAACGTgtgaATGGCTCCATTGAAGAAGTATATGCAGCCTGCAGTG
GTGCTTGCTGCAGCCACGGCCGGCATGACGTcggccttcctgctccccgc
CATGCGCCCTGTCCCTGCCCCCACGACCGTCACCTGCGCAGCAAGGACGT
CGCcgctcttctcccgctcttccacgccctctGTCACGCCTGCCAGGCCC
ACCAAAGGCACGATTCTGTCGGCCACCAATTTTTTCGAATCATTTTTCGC
GCCCAAATCCGCCTCTGGGGCCGGTGCCcgtgggggaaagaaaacCATCG
TCCTCACTGGCACTTCTTCGGGCCTGGGCAAGGCGACGCTCAAAGCGCTC
TGTGCCCGCGGTGACAATTTCGTGATTTGCGGCGTCAGGGACATGGAGAA
AATGCaggccgtggcggaggaaCTGGGCTTGGACCCGTCTTCCTACACGA
TCCGTCCCTTGGACCTCTCATCCTTCGCCTCGGTGAGGCGCTTCGCCAAG
GAAGTGAAGGCGGTGAAGGGCGGTAAGCCCTTGGATGCCCTGGTCTGTAA
CGCGGCCGTGTACCTGCCTGCCCGTGACTACCCGACGTTCACCCCGGATG
GGATCGAAGAGTCCCTCCAAATCAATCACctctcccacttcctcctggtT
TCGCTCCTGCTCGACGActtgaagaaggcgaaggaccCCCGCTGTGTGAT
CGTGGGCTCCATCACCGGGAACGACAACACCATCGCGGGGGCCTTCGTCT
GGCCGCGAGCCTCCTTAGGGGACTTGAAAGGGATGcaggagggggcgaag
gagcCTGTCTCGATGATCGACGGCAAGAATTTCAACGGGGCGAAAGCCTA
CAAGGACAGCAAGaTGTGCAACATGATGACCGTGAACGAGCTTCACAAGC
GGTACCATGACGCCACGGGcatcaccttctcctccatgtacCCCGGGTGC
ATCGCCGAAACGGCCTTGTTTCGGGAAAAGCGACAGTGGTTCCGgacgct
cttccccctcttcatgAAGTACGTCACGGGGGGCTACGTGTCCGAAAACG
AAGCCGGCGAGCGTCTGGCCCAAACCGTGTGGGACCCGGCGTTGAAGACG
AGCGGGCAGTACTGGTGCTGGAACGGTCAGGCCCAACAGTTTGGCTACTA
CGACCCTGCCACCAAACAAGTtcgaggcgcgggcgggagcGGCGGAACCG
TGTTCCCTGGGAAGTTGGCGGGGCAAGTGATGGATCAGGCCAAGGCAGAG
AAAATGTGGGAGTTGAGCTCGGAGATTACGGGGGCGACGTGGCCGAGCGT
AGGGGTCCGGGAATTGGCGAACGTgtga

Synonyms

Publications