rna5693, rna5693 (mRNA) Nannochloropsis gaditana

Overview
Namerna5693
Unique Namerna5693
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length499
Alignment locationCM002466.1:600737..601612 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101727g2.8724.mrna
Orig protein idgnl|cribi|Naga_101727g2.8724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:600737..601612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101727g2gene5501Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24995.1cds5678Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5693rna5693-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5693 ID=rna5693|Name=rna5693|organism=Nannochloropsis gaditana|type=mRNA|length=499bp
TCGATGTTGTCAGCCAATAACTACTTTAGAGTCTAACTGGTGGCTGGCAA
GCGCACATTCTTGCGTTAAGAATCATACACCAACATCTTAAAGTCCTTTC
CTTCCGTCAGGAGACGGGACAGTGCCACCATGGGCCGAAGATGGGCAAGC
AAGCAGAAGCCCTCCTCCCAGCTGCTGTCCTTACTGGGCTTGATCTTTTG
CGCACAGCTGTATATCATTTTTCATTCTTCTTCTTCCTCATCGTGCGCTG
GGAAGGAGCAACACGCGATTCCTACGCCCGCTTCATTGGCAGCATCACCA
TCTTCTTCCCCTACTGTGCCTCTCGAAGACCCACCTTTGCCGCGCTTGTC
AAAGCCTCTCATAGTGGCCTGTCTGGCCAATATGCGTACAGTGTCGACCA
CTGCTTATAATCTTGCACGCGTCCTCATGGAGCGCGTCGACCCGAATTCC
GTTTCTGGATGGGAAAAGGATGTCACAGGCAGCAAGAAGAGAATTTTAA
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protein sequence of rna5693

>rna5693-protein ID=rna5693-protein|Name=rna5693|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MTSTNKKYLCGCLNGVGNASACGCLEGGPPNTLLVGSWLSDGPSSDSDWG
FRTNGTKPEVYPKQAVRGLEHVWLSTIDSRTARHTTRTALSKRLRFGDIE
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mRNA from alignment at CM002466.1:600737..601612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5693 ID=rna5693|Name=rna5693|organism=Nannochloropsis gaditana|type=mRNA|length=876bp|location=Sequence derived from alignment at CM002466.1:600737..601612- (Nannochloropsis gaditana)
TGGGCCTGGGTGACCTCAGCCACGAACATCGCCTCAATCCTGAGGTCGAT
CTCAATCACATGAGGGTTGGTCCCAATTTACGACGATATGACGAAAGATT
GAGGCCTGGCATTTCGAGCCCGATCGTGGGGCCGAGGTCGAAAATGATTC
TGGGTAGCAACGTGTCCTGTAGGAGCCTTGTGCAGGACAACGCGGGCGCA
TATTGACGTAGTTACCAACAATTATCTATGAAAGCAACGGCAGATTTCTG
AACCCCATAGGCTTGTTGCTGTAGGCGCATATTACGACGTCGACTATCCC
TCTCGCAGGAGCGTAACACCTCTTGCAGGAGCTCAACACCTCTTGCAGGA
GTGTAACTCCTCCGAGTCCGTATCGCGGCCAGGTAATGTTTTCACGGGCA
CTGAACGCAAATCGTCACCATAATCATGACAAGCACGAATAAAAAGTACC
TGTGTGGGTGCTTAAATGGAGTAGGAAATGCCAGTGCCTGTGGCTGTCTT
GAAGGAGGGCCTCCGAATACACTCCTTGTCGGATCATGGCTGAGCGATGG
ACCCTCCTCGGACTCTGACTGGGGCTTTCGCACGAATGGGACGAAGCCAG
AGGTCTATCCGAAGCAAGCGGTCCGAGGCCTGGAACATGTTTGGCTTTCG
ACGATTGACTCCCGTACAGCCCGTCACACAACTAGAACCGCACTTTCGAA
ACGATTGAGATTCGGCGACATTGAATGAATGGGATTCGTGCTCTTGTGTA
AACGTTTACTATGTTTTCATAAAAGATTGAAAATCGTCCTTCCTCGAGGG
TGGTCCTATTGCTCTTCGTATATCGGTCTCCTCGAATAACAAGAGACACT
CGTTTGAACGAAAAGGGCAGCCTCAC
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Coding sequence (CDS) from alignment at CM002466.1:600737..601612-

>rna5693 ID=rna5693|Name=rna5693|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002466.1:600737..601612- (Nannochloropsis gaditana)
ATGACAAGCACGAATAAAAAGTACCTGTGTGGGTGCTTAAATGGAGTAGG
AAATGCCAGTGCCTGTGGCTGTCTTGAAGGAGGGCCTCCGAATACACTCC
TTGTCGGATCATGGCTGAGCGATGGACCCTCCTCGGACTCTGACTGGGGC
TTTCGCACGAATGGGACGAAGCCAGAGGTCTATCCGAAGCAAGCGGTCCG
AGGCCTGGAACATGTTTGGCTTTCGACGATTGACTCCCGTACAGCCCGTC
ACACAACTAGAACCGCACTTTCGAAACGATTGAGATTCGGCGACATTGAA
TGA
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Synonyms
Publications