rna5692, rna5692 (mRNA) Nannochloropsis gaditana

Overview
Namerna5692
Unique Namerna5692
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1486
Alignment locationCM002466.1:600114..600612 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g30.2420.mrna
Orig protein idgnl|cribi|Naga_100068g30.2420
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:600114..600612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g30gene5500Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5692rna5692-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24996.1cds5677Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5692 ID=rna5692|Name=rna5692|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp
CAGGGACCATGGCTTCCCCGCAACCTGCCTGAAGCAGGGGACAAAGTATG
ATCCTGCTGCCTCGATCCTCCCCGCAATATTCGCAACTGCCGCCTAATTT
CTTCTTCGGAACATACAGGACGGGTGAATGGCTGGTGTGACGGCGGCTTG
TCCTTTACAGGCCGCTAGAATTAGTTCGAGGGGATTGGCCCACGAACAAG
CTCTGCTGCTGCAGCAACAGCCGAGCTTACCATTGGATCTGGAAGCACAC
GTAGCCAGGGCATGGCGATGGTATCGAAGTATGGGGAGTCCTCGATATGT
GTGTGCTCCTATGGTAGATCAATCGGAGCTGGCATTTCGCTTGCTGTGTC
GTCGGTATGGCACTCAACTAGCCTTCTCTCCTATGGTCCATGCTGCCTGC
TACCTGCGAGAGAAAAGGAGCAAGCGCAACGAGGTTTTTTTTTGCAACAC
AAATCCACAAGATTGGCCATTGATCGTCCAACTTTGTGGGAACGACCCAG
GCGTTCTTTTGGCTGCCGCAAAGGAGATCTGTCGTATTGAAGGTGTGTGT
GCCGTCGATTTAAACTTGGGATGTCCACAAGGAATCGCGCGCAAGGGAAA
ATATGGCGCCTTCTTGCTCCACCAAGCAGATTTAGTGGTGCGCATTGTTT
CCACATTGAGTCGAGAGCTGGACAAGCCCGTAACCTGCAAAATACGCCTG
CTTCCCACGTTCAGCGAGACTTTGGCCTTGTGTCAGGCCTTGGTGGGTGC
CGGCTGCTCCTTGCTGACCGTGCACGGGCGCACCAAAGAGCAAAACAAGC
ACTTGGTGGGCTCGTGTGACTGGGAAGCAATAAGGAAAATCAAGGCTGCC
GTGCCCGTTCCTGTTTTCGCCAACGGTGGTATCGCCGACCTGGACGACGT
GGAGAAGTGTCTGTCCTTCACGAAAGTCGACGGAGTCATGTCCTCGGAGG
CATTATTGGAGAACCCCGGTCTCTTCTCCCGGAACGTTAACGTCGTCACT
GGGCACCGGGCCAATCAGCTCGACCTTGCCGAGGAATACCTAGAACTTGC
GGCCCAGCATCCACCGGATCGACTGAAATGCGTGCGGGCCCATGTCTTCA
AGCTGGTCTTCACGGGCGTGCAGCTTTTCGAAGATCTTCGGGACGCGCTG
GTGGCGGCGGAAAACGTGAAGGAAATGAGATGGGTGGTGGGAGAAATTAG
AAGGAGGGCGCTAGAGCGGGCCCAAGGGCGGGATGTAGGCAGCGCGGGAG
AGAGGTCGTGGTATTGGAGGCATTGGCACAAAGGAGTGACAGATAAAGGG
AGCGAGCTACCCAGGCAGGGCAAAGAGGGAGGGAAGAGACGAGGGGAAGA
GGGAGGGGTGGAAAGTGAGGGAATGGGGTGTTTGTTCGGGGCGGAAGACT
GAGCCTTTTCCCTAGCGGCACCGAATGGCCAGTGCCCTAAGTGGTGCAAC
GCTTTACACCAACAATACCTTCAATGTTGCATTTCG
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protein sequence of rna5692

>rna5692-protein ID=rna5692-protein|Name=rna5692|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MGRRWASKQKPSSQLLSLLGLIFCAQLYIIFHSSSSSSCAGKEQHAIPTP
ASLAASPSSSPTVPLEDPPLPRLSKPLIVACLANMRTVSTTAYNLARVLM
ERVDPNSVSGWEKDVTGSKKRIL
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mRNA from alignment at CM002466.1:600114..600612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5692 ID=rna5692|Name=rna5692|organism=Nannochloropsis gaditana|type=mRNA|length=499bp|location=Sequence derived from alignment at CM002466.1:600114..600612+ (Nannochloropsis gaditana)
TCGATGTTGTCAGCCAATAACTACTTTAGAGTCTAACTGGTGGCTGGCAA
GCGCACATTCTTGCGTTAAGAATCATACACCAACATCTTAAagtcctttc
cttccgtcaGGAGACGGGACAGTGCCACCATGGGCCGAAGATGGGCAAGC
AAGCagaagccctcctcccagctgCTGTCCTTACTGGGCTTGATCTTTTG
CGCACAGCTGTATATCATTTTtcattcttcttcttcctcatcgtgCGCTG
GGAAGGAGCAACACGCGATTCCTACGCCCGCTTCATTGGCAGCATcacca
tcttcttcccctacTGTGCCTCTCGAAGACCCACCTTTGCCGCGCTTGTC
AAAGCCTCTCATAGTGGCCTGTCTGGCCAATATGCGTACAGTGTCGACCA
CTGCTTATAATCTTGCACGCGTCCTCATGGAGCGCGTCGACCCGAATTCC
GTTTCTGGATGGGAAAAGGATGTCACAGGCAGCAAGAAGAGAATTTTAA
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Coding sequence (CDS) from alignment at CM002466.1:600114..600612+

>rna5692 ID=rna5692|Name=rna5692|organism=Nannochloropsis gaditana|type=CDS|length=370bp|location=Sequence derived from alignment at CM002466.1:600114..600612+ (Nannochloropsis gaditana)
ATGGGCCGAAGATGGGCAAGCAAGCagaagccctcctcccagctgCTGTC
CTTACTGGGCTTGATCTTTTGCGCACAGCTGTATATCATTTTtcattctt
cttcttcctcatcgtgCGCTGGGAAGGAGCAACACGCGATTCCTACGCCC
GCTTCATTGGCAGCATcaccatcttcttcccctacTGTGCCTCTCGAAGA
CCCACCTTTGCCGCGCTTGTCAAAGCCTCTCATAGTGGCCTGTCTGGCCA
ATATGCGTACAGTGTCGACCACTGCTTATAATCTTGCACGCGTCCTCATG
GAGCGCGTCGACCCGAATTCCGTTTCTGGATGGGAAAAGGATGTCACAGG
CAGCAAGAAGAGAATTTTAA
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Synonyms
Publications