rna5685, rna5685 (mRNA) Nannochloropsis gaditana

Overview
Namerna5685
Unique Namerna5685
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2211
Alignment locationCM002466.1:581002..581277 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g22.2431.mrna
Orig protein idgnl|cribi|Naga_100068g22.2431
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:581002..581277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g22gene5493Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5685rna5685-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25007.1cds5670Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5685 ID=rna5685|Name=rna5685|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp
ATGAGCGCGACATTTCCAGTCATCCTTTCAACTGGTGCCGGCGGCCAAGA
TGGCAGTTGTCCTTCTCCCCCGTCCGCATCTGCTTCTTCCTCCACAGACG
GACTTTCGAATGCGCCTGCTATTACTTCTCCCGTTATGGTACTTGAGACT
ATCACTGAGAAGACAAATGGAAATGCGCCCTTGGACAGCGTGCTGGAAGG
CCTCCTCTCCCTCCGCTCCCCCGCGTTGCCTCTCATGCCGGGGCCCATGG
TTATTTTACGGTGCGGAAATATGGAGCAAGTCACCGTACCTATGACAAAT
TCAAGTGGCAATGGTGGCGTGGAGGAAAGTGGAGGTCCTGTCTCGGCGTC
CGCCCCGATCCTCATGACCACTGCTCCTGCTGATGCCGGCCTGGCTCAAG
CCTTTCGCCAGAGCGACGCGACCACGGCCGACAGTGATCAGAACTTTTAT
CTGTCCAAGGACCCCTCTATTCTTGCTGCACCATTTCCTCCTCCTTTTCC
ACCTCCGCTTTCTTCGCCACCATCGCCCTTACCCACGGCTAGCTTCCCAC
GACCAGCCCTCCCGCGTCAAACTCAGCCTACCTTCCTCCCCCATCCAGAG
CCCGCAAGCCCCATGCAAATCACGGTGCTACCCAGCCGTAATATGAAACG
GACCAACACAGACGTGGAGGACCCGTCTCCCTCCCCGCGTCCTCCTCCTC
ATTTTCCTTTCTTCTCCTCCCCTCCTCCCCGACTTCCTCCCTTTTCCGCC
ACACCACATTCCCACTTTTATGGGCATTTAATCGCCCCTGACAATGCCGC
CTTTATGACTCATGCGGCTGCCGGCGCCGCTGAAAGCGGCAAGATACAGG
CAGAGAAGCTCCTGGTTTCGATCCCGACTGAATCCCTGGACCCGTCCTCC
GTGATCGCCTCCGACCCCGCCCAGGCCCGGCGCCTGGCCCTCACGGCTGC
ACGAGCGGCCTCGATCTCGACAAGTCTACGAGAGAGCGGGGGAGAGGAAG
GGGAGGAAGGGGAGGAGGCTGGCTCACGTCAAATCATCAACCAGCAGGTT
GCCTTAGTGCCCTCCCAGACCTCCACCATCTTGAGCCAAAACCAGGAATC
TCGCGTTAAAAACCTGGAGAAAATCCCCCCCGAAGCTGTTCGAGCCTTGG
AGGCCACGTTGTCGGCCATTCCCGCCTGGGGGGTGAGGATTACGAAGGAG
AAGCTGGAGGCTTTGGGGGGAAGGGTGCTGGGCTCGCCGGTGCTCATGGA
GGGGGAGCGGTCAGAGCAGGTGGTCGACTACGCCCCCAAGAACTATCACA
TCCAGTGTCGACATTGCGGAAAGAACTTCCTGGGGAAGAACGCATTGAGA
AATTTTGAGCTACACGCAATCTTTTGGACTTTGTACCGCAGTCATCCTGC
CATAGTCCGAGTCGGACACGCCGCTGCCTCTGCGGCTGCGGCGGCCATGG
GACTTCAATGGGCGAGAGTGAGCAATGCGGAGGAAGGCGGCACAAATGCT
GGCATGGGTTGTGCTCACGGAGACATGCCCGGCAGCATGAGCGAGAGTGG
TGGGCTCGCCTGTAGTTCTGATGCCAATGCAGGGAAACAGAATATGGATG
GGGCGGTCAGGGCGGCGGCCCAGGTCTTTGAGGGTCACCATCAGCTGAAT
TACCCTTGCAACAGCGTGGCGCGGGACGTCGTTGTCTTTATGGAGGCTCG
AAAACCCGTGCTGTGCAATAACCAGAAGAAAATATTCATGCTGCGGGGAA
ATCTCCACCATGATACGAGCCTCTTCCAAAACCGGGCCTGGCTCCAGATA
CCGGCCAGCAAAACATGGGAGAGTTGCAAGCTCGCCGATCCCACCTCCCT
TCAAGATGTCCTCTGGTGCAGAGGAGGGAAAGCTCTGGAGGCCTATGAAA
CCCTGCGCTCCCACATTTTTGCCTGGCACGACTCGGGCGTGTTTACTTCT
TGCAGTCACTGCAAGCGGGTCTATCAGAATACACGTGCTTTTCTCGGACA
CGGGTGTGTAAAAAAGAGTCCAATTGGAATGCCCGCTGATGCTCAAAAAG
ACGACACCGCCGTTGCCTCCTGTTCGCAATCGATGATGTCCTTTCTTGAG
GTATCCCCGGATTTTGCGCAGCTCTTTTATCAACTCCGTTCACTTCCTTC
CGAGAGGAGAGAAGAGGTATTTGACCGGGTGAGCAAGCGCCTCAGGTCCA
CGAATGTGTGA
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protein sequence of rna5685

>rna5685-protein ID=rna5685-protein|Name=rna5685|organism=Nannochloropsis gaditana|type=polypeptide|length=91bp
MGRNQICVKPLLVCRFKLHHTAWNCGRRMYRCSGSRRNCKGLCRKKRGAR
AWNRCKALLLRSISIIGVFGRDRRMSDGICVERKSKEFIKD
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mRNA from alignment at CM002466.1:581002..581277+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5685 ID=rna5685|Name=rna5685|organism=Nannochloropsis gaditana|type=mRNA|length=276bp|location=Sequence derived from alignment at CM002466.1:581002..581277+ (Nannochloropsis gaditana)
atggggaggaacCAAATCTGCGTGAAACCTCTCCTGGTCTGTCGCTTTAA
ATTACACCACACAGCGTGGAATTGCGGGCGGCGGATGTACAGATGCAGTG
GAAGTAGACGAAATTGCAAGGGGCTTtgcagaaagaaaagaggcgcAAGA
GCTTGGAATAGGTGCAAAGCGTTACTTCTGAGATCCATCAGCATAATCGG
TGTTTTTGGCAGGGACAGGCGCATGTCGGATGGTATTTGCgttgaaagga
aaagcaaagAATTCATCAAAGATTAG
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Coding sequence (CDS) from alignment at CM002466.1:581002..581277+

>rna5685 ID=rna5685|Name=rna5685|organism=Nannochloropsis gaditana|type=CDS|length=276bp|location=Sequence derived from alignment at CM002466.1:581002..581277+ (Nannochloropsis gaditana)
atggggaggaacCAAATCTGCGTGAAACCTCTCCTGGTCTGTCGCTTTAA
ATTACACCACACAGCGTGGAATTGCGGGCGGCGGATGTACAGATGCAGTG
GAAGTAGACGAAATTGCAAGGGGCTTtgcagaaagaaaagaggcgcAAGA
GCTTGGAATAGGTGCAAAGCGTTACTTCTGAGATCCATCAGCATAATCGG
TGTTTTTGGCAGGGACAGGCGCATGTCGGATGGTATTTGCgttgaaagga
aaagcaaagAATTCATCAAAGATTAG
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Synonyms
Publications