rna5683, rna5683 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5683
Unique Name	rna5683
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1739
Alignment location	CM002466.1:574128..576871 +

Link to JBrowse

Properties


Property Name	Value
Product	transcription factor mtf-1
Orig transcript id	gnl\|cribi\|Naga_100068g18.2432.mrna
Orig protein id	gnl\|cribi\|Naga_100068g18.2432
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:574128..576871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100068g18	gene5491	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5683	rna5683-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25008.1	cds5668	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:574128..576871+
coding sequence from alignment at CM002466.1:574128..576871+

mRNA sequence

>rna5683 ID=rna5683|Name=rna5683|organism=Nannochloropsis gaditana|type=mRNA|length=1739bp
CAAGCCCATCTGTGAATGTTGTTTATTCGCCAGGCCTCGGGCAGCCAGAG
CCCATCAGCTCGCACCGGCAACAAAGAAATGGTGACTGATCTCGAACATA
TTTCTCGTCAGGTGTCGCAGCCATAGTGTCAGGTGGTCGTCGCCGTAGAA
AAGAAGGGCGTCCTTACTTCATGGCAGCCGCGGCGATGTCATCACGAATG
CCTGGTCTGATGCTCGTTTTGAGTATATTTTTCACTTTTATGTTGCAAGA
GCATCTGTTCAGTCTCGCTGAGGAACAAGGTGACACAATGAAGCAGATGG
CTGCAGAGTTGGATGGGCACTACGAAAATCAGACGCTGACTCGAGTAGCA
TTTGGCTCTTGCAACAAACAGTGGCGGACCAATGTTTTATGGGACAATAT
CGTGGACTTTCATCCTCAAGCGTATCTGTGGCTGGGTGACGCCGTGTACG
TCAAAGAAAAGGAAGGTGACAATGACGCCAACCTTCGGAGAGCCTACTCC
CGCCAGCTGAAAAATAAAGGCTACCAACGTCTGCTGAGCTCGGGTGCAAT
AATCGAAGGCGTATATGATGATCATGACATGTCTACGAATGATGGCCATA
AAGTGAATTATACCCCTCAACGCCAGAGTGCTTATTTAGACTTCCTTGGA
CATGTTTCTGAAGATTCTCCCAGACGATCTCGGTTGGGATTGTTTTCCGC
TCACGTCTTTGGAGAGCCACCGCGCCAAGTTAAAGTCATTTTCCTGGACG
TCCGCTCCTTAAGCGACGAGCCAGCCATTGTGGTACCAGAGTGTGTAGCT
AATCTTTTATGGCCTGTGAAGCCCTATCTTTTAGCGCTTACGCGATGGGC
TGCCGTCCTCCTGGGCATCACCGGACGCTTTCACGGCGACATGCTGGGGA
CCGAGCAGTGGTCATGGCTGGAGGCACAACTGGCAGGTTCAGAGGCCTCT
TTTCACGTCCTTGTCTCTACCGTTCAGGTCTTATCTGTGAATCCCATTGC
GGAGGGGTGGGGCCACTACCCGGCCGCACAAAGTCGGTTGCTTGCACTTT
TGCGGAAGCATCGGCCCCGCGGATTGGTTATCCTCTCCGGGGATGTACAC
TTTGCAGAACTTCTCGTGACGCAACCACCTAGCGAGGGGATGAGAGAAGA
GGAGAAGGAGGGGAAGAAGGAGGCCCTGGAGGTAACAAGCAGTGGAATGA
CCCATACGTGCTTCGCCACCACCATGGGTACGTGTGAGATGGCGGTGGAT
CGTTACGATCGACACCGTTTGACGCCTTGCAGTTTTTTCGGGGGCCTCAA
TTATGGAACCATTGAGCTAGACTGGGAGCAACAAGAAGCCTGGGTGAGAG
TGCGGAATAAACGTGGGGAAGCTGTTCTTCAAACTTTCCGTCGACTTGAT
GGAAGCTCTCCGGGCGCCTATTTAGGTGAACCATGGTCTATTAATGAGAA
CAATGATCTCAGCTTCTTTATATTCGCTTTCCTGTGTGTTGTCTCACTCG
CCAGTGGAGTGCTATGGGTCTTCAGGTGGTTGTTGAAACGCCATTGCAGT
AAGGACGAGGGAAGAGACAGAAAGATTGGACAGGCAAAAAAGGAGGCATA
ATCGAAAGCCATACCTACTCAAAAGCTGGGCTTTGTACAGTTGTCGCGCC
AAACCATGAAGAAAGAACAGAAAGAAAAGGATCCACGCAACATCGGGTCT
AACCTCGTTGTCCCTCTGGAAGAAGAAAATATCTCATTT

protein sequence of rna5683

>rna5683-protein ID=rna5683-protein|Name=rna5683|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MPCSSSLSKFSADCFCVSTHKPYIPYAYKYIRRKFVVLPIGFLGLFLITR
TPSFFYCRLSTFFQMDVTSSKGSQLPRRYKCKYEGCGKAFTKSSNLVQHV
RIHTGERPFPCKYPGCGKNFRQSGNLTKHMRSHEHSHLRWKRNTKDKPFR
CTYIGCEKSFTAKSSLKIHIAQHEEVMGEPGTPAMGTPTRPSLPQGHHLA
RTTGGGGMPGSSRVGVTGGQDLHGVAQQHYPRQHQVSSAVTAYHGSHTMP
TSRPPVMCHHGGCKAVFPSAHALMHHTLLSCPVLMADHEHIRRLLKEAVH
LLSDHCLNTPAIAHFVQRAQEVDSRHRAAARQVQQKQQQQQQQGGAILAE
EDDEEEEDEDEEDDDGEEMEEGDEEGAESDQSSRHPREHGQANKQVHHPE
HRDGYEGPRHQHQAHAPRAGAGSHMQWERAGSQQQQLSHKQQHPHRLALP
MTVTTPGSYSQPQGIRRELTLQPTGSAPDLGVIKADMTDDMGVGFSFTMT
PHGTLTGSSRFNGFENADAQPSLLTPGANSLMSPSLAFDFPSSTNEATTE
GMPPQALAIFSPSQGAFVFPERY

mRNA from alignment at CM002466.1:574128..576871+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5683 ID=rna5683|Name=rna5683|organism=Nannochloropsis gaditana|type=mRNA|length=2744bp|location=Sequence derived from alignment at CM002466.1:574128..576871+ (Nannochloropsis gaditana)
ACCATGGCCTCCCCGAGGATGCATGAGCACTTTAGTTgcatccttccccc
ctaATGCACATCATAGACACTGATTTAAAGCACGATTAATCTCAGGGGAA
AGTATAAACCGCGCTTGAAATATCGTGCAATTGTATGGGCCGCGGTCTGG
ATTCATGCCCTGTTCGTCATCCCTCTCGAAGTTCTCCGCTGATTGTTTTT
GCGTCAGTACTCATAAACCATACATACCTTATGCCTACAAATACATTCGC
AGGAAATTTGTTGTCCTTCCAATCGGATTTTTGGGGTTGTTTCTCATTAC
ACGGACACCGAGTTTCTTCTATTGCCGTCTATCTACTTTCTTCCAAATGG
ACGTCACTAGCTCCAAAGGCAGCCAGCTTCCTCGTCGGTATAAATGCAAA
TATGAAGGATGCGGGAAAGCATTTACCAAGGTACGCCTGCGAATATTTCT
TCTTGGACAACCAGAGGCGGGACATGCGAAGCGCGATTGACCTCCATCGT
TGCTTTGAGACTGTGAATAGAGCCCCACTTACACCTAATCTTCACTGCCG
CCCTGATCCTACACTCGATATCCCTTGAACAGTCCTCGAATCTTGTACAA
CACGTCCGAATACACACTGGCGAgcgtccttttccatgcAAGTACCCCGG
ATGTGGCAAAAATTTCCGGCAAAGTGGAAATCTGACCAAACACATGCGCT
CCCACGAGCATTCCCACCTTCGCTGGAAACGCAACACGAAAGACAAGCCT
TTTCGATGCACGTACATAGGCTGCGAGAAGTCCTTTACTGCCAAGAGCTC
CCTCAAGATCCATATAGCGCAGCATGAGGAGGTAATGGGGGAGCCGGGAA
CCCCCGCGATGGGGACACCCACGCGCCCCAGCCTGCCTCAAGGCCACCAC
TTGGCGAGAACgacggggggcgggggcatgcCGGGTTCGAGCCGGGTCGG
GGTCACGGGTGGACAAGACCTTCACGGCGTGGCCCAGCAGCACTACCCTC
GACAGCACCAAGTGTCTTCGGCTGTCACTGCCTACCATGGTTCCCACACG
ATGCCtacctcccgcccgccggTTATGTGCCACCACGGAGGGTGCAAAGC
CGTATTTCCTTCCGCGCATGCCCTCATGCACCACACGCTGCTAAGCTGTC
CGGTCCTGATGGCGGATCACGAGCACATCCGTCGCTTGCTCAAGGAGGCC
GTCCATCTTCTCTCGGATCACTGCCTCAACACCCCCGCCATTGCTCATTT
TGTGCAGAGAGCCCAGGAGGTTGATTCCCGACATAGGGCGGCCGCTCGTC
AAGTacagcagaagcagcagcagcagcagcagcagggaggggcaatattg
gccgaggaggatgacgaggaagaggaggacgaggacgaagaggacgacga
cggggaggaaatggaggagggggacgaggaaggggcggagagcgACCAGT
CGTCGCGCCACCCGCGCGAGCACGGCCAAGCCAACAAGCAGGTCCACCAT
CCAGAGCACAGGGATGGGTACGAGGGTCCTCGTCACCAACATCAGGCCCA
TGCcccgcgggcgggggcgggcagccATATGCAATGGGAACGAGCGGGGa
gtcagcagcagcagctcagccacaagcagcagcatccaCACCGGCTAGCC
CTGCCAATGACCGTTACCACGCCTGGGTCGTACTCCCAGCCGCAGGGCAT
CAGAAGGGAGCTAACCTTGCAGCCGACGGGCAGCGCCCCGGACTTGGGGG
TGATCAAGGCAGACATGACGGACGACATGGGGGTtggcttctccttcacc
ATGACACCGCATGGGACCTTGACGGGGAGCAGCCGATTCAACGGCTTCGA
GAACGCGGATGCCCAGCCTTCCCTGCTGACGCCGGGGGCCAATAGCCTCA
TGTCTCCTAGCTTGGCCTtcgactttccctcctcgacaaacGAGGCCACC
ACAGAAGGGATGCCTCCGCAGGCACTGGCTATCTTTTCTCCGAGCCAGGG
GGCCTTTGTCTTTCCGGAACGGTACTGAGTTCGAGGGGAGCTACAAAGAG
ATGGGGGCGAAAGAGGGCATACAGGGAAAAGCAGACGACAGGGATCGCGT
CTTCGGGGCCTCTATTTTAGGATAAGGAAATTCACGAAAGAATGGGTTGC
GCTGTGAGGAGGCTGAAAAGGGAGTCAGACGTGGAAATTGATGAGTACAT
AAAGTACAGTCAGACATTGGCCACAAAATAGAGGTAGAGCGAAGGACCTG
AATGTGGATGGATGCCTCTACCTCGGAGAGCACCGCGCATCCACGCGTGG
CCGGGAGATCAATGAAAAATTTTTGAAGGGTGTGGTGATCAGATTTAAAT
AAGGTTTTCGCCTGGTGTACTTCTTACGGTCGTAATTTCCTGTAATCTTA
GGAGTAAGAGCATGGTGGAGACGACGAGGGGGCATTGTTTGATTTTGGAA
AACGGCGAGGGATTTGCCACAAGCTGACGTGGACAAGGGCCACGGTAAAT
ATTGGGGATGGTTGGGGAGGTTTCTATCTTTTCGAAAGAACTTGGGCGGT
GTGGTTGGCCAAAAGCGGCATGAAGCCTACAGGTGTGTTCCCGTGAAACC
CGCAGGAGAAAGCGCACACTACCAAATCGGGCGGGACGTGAaatgagggg
aaaagagctAAAAGGGACACGCGAAACGGACCATGTGTGTCTCATATTGA
AAACTTGATGTTATAACTAGCTTAAGACTACTGAGCTGAAATGC

Coding sequence (CDS) from alignment at CM002466.1:574128..576871+

>rna5683 ID=rna5683|Name=rna5683|organism=Nannochloropsis gaditana|type=CDS|length=3444bp|location=Sequence derived from alignment at CM002466.1:574128..576871+ (Nannochloropsis gaditana)
ATGCCCTGTTCGTCATCCCTCTCGAAGTTCTCCGCTGATTGTTTTTGCGT
CAGTACTCATAAACCATACATACCTTATGCCTACAAATACATTCGCAGGA
AATTTGTTGTCCTTCCAATCGGATTTTTGGGGTTGTTTCTCATTACACGG
ACACCGAGTTTCTTCTATTGCCGTCTATCTACTTTCTTCCAAATGGACGT
CACTAGCTCCAAAGGCAGCCAGCTTCCTCGTCGGTATAAATGCAAATATG
AAGGATGCGGGAAAGCATTTACCAAGTCCTCGAATCTTGTACAACACGTC
CGAATACACACTGGCGAgcgtccttttccatgcAAGTACCCCGGATGTGG
CAAAAATTTCCGGCAAAGTGGAAATCTGACCAAACACATGCGCTCCCACG
AGCATTCCCACCTTCGCTGGAAACGCAACACGAAAGACAAGCCTTTTCGA
TGCACGTACATAGGCTGCGAGAAGTCCTTTACTGCCAAGAGCTCCCTCAA
GATCCATATAGCGCAGCATGAGGAGGTAATGGGGGAGCCGGGAACCCCCG
CGATGGGGACACCCACGCGCCCCAGCCTGCCTCAAGGCCACCACTTGGCG
AGAACgacggggggcgggggcatgcCGGGTTCGAGCCGGGTCGGGGTCAC
GGGTGGACAAGACCTTCACGGCGTGGCCCAGCAGCACTACCCTCGACAGC
ACCAAGTGTCTTCGGCTGTCACTGCCTACCATGGTTCCCACACGATGCCt
acctcccgcccgccggTTATGTGCCACCACGGAGGGTGCAAAGCCGTATT
TCCTTCCGCGCATGCCCTCATGCACCACACGCTGCTAAGCTGTCCGGTCC
TGATGGCGGATCACGAGCACATCCGTCGCTTGCTCAAGGAGGCCGTCCAT
CTTCTCTCGGATCACTGCCTCAACACCCCCGCCATTGCTCATTTTGTGCA
GAGAGCCCAGGAGGTTGATTCCCGACATAGGGCGGCCGCTCGTCAAGTac
agcagaagcagcagcagcagcagcagcagggaggggcaatattggccgag
gaggatgacgaggaagaggaggacgaggacgaagaggacgacgacgggga
ggaaatggaggagggggacgaggaaggggcggagagcgACCAGTCGTCGC
GCCACCCGCGCGAGCACGGCCAAGCCAACAAGCAGGTCCACCATCCAGAG
CACAGGGATGGGTACGAGGGTCCTCGTCACCAACATCAGGCCCATGCccc
gcgggcgggggcgggcagccATATGCAATGGGAACGAGCGGGGagtcagc
agcagcagctcagccacaagcagcagcatccaCACCGGCTAGCCCTGCCA
ATGACCGTTACCACGCCTGGGTCGTACTCCCAGCCGCAGGGCATCAGAAG
GGAGCTAACCTTGCAGCCGACGGGCAGCGCCCCGGACTTGGGGGTGATCA
AGGCAGACATGACGGACGACATGGGGGTtggcttctccttcaccATGACA
CCGCATGGGACCTTGACGGGGAGCAGCCGATTCAACGGCTTCGAGAACGC
GGATGCCCAGCCTTCCCTGCTGACGCCGGGGGCCAATAGCCTCATGTCTC
CTAGCTTGGCCTtcgactttccctcctcgacaaacGAGGCCACCACAGAA
GGGATGCCTCCGCAGGCACTGGCTATCTTTTCTCCGAGCCAGGGGGCCTT
TGTCTTTCCGGAACGGTACTGAATGCCCTGTTCGTCATCCCTCTCGAAGT
TCTCCGCTGATTGTTTTTGCGTCAGTACTCATAAACCATACATACCTTAT
GCCTACAAATACATTCGCAGGAAATTTGTTGTCCTTCCAATCGGATTTTT
GGGGTTGTTTCTCATTACACGGACACCGAGTTTCTTCTATTGCCGTCTAT
CTACTTTCTTCCAAATGGACGTCACTAGCTCCAAAGGCAGCCAGCTTCCT
CGTCGGTATAAATGCAAATATGAAGGATGCGGGAAAGCATTTACCAAGTC
CTCGAATCTTGTACAACACGTCCGAATACACACTGGCGAgcgtccttttc
catgcAAGTACCCCGGATGTGGCAAAAATTTCCGGCAAAGTGGAAATCTG
ACCAAACACATGCGCTCCCACGAGCATTCCCACCTTCGCTGGAAACGCAA
CACGAAAGACAAGCCTTTTCGATGCACGTACATAGGCTGCGAGAAGTCCT
TTACTGCCAAGAGCTCCCTCAAGATCCATATAGCGCAGCATGAGGAGGTA
ATGGGGGAGCCGGGAACCCCCGCGATGGGGACACCCACGCGCCCCAGCCT
GCCTCAAGGCCACCACTTGGCGAGAACgacggggggcgggggcatgcCGG
GTTCGAGCCGGGTCGGGGTCACGGGTGGACAAGACCTTCACGGCGTGGCC
CAGCAGCACTACCCTCGACAGCACCAAGTGTCTTCGGCTGTCACTGCCTA
CCATGGTTCCCACACGATGCCtacctcccgcccgccggTTATGTGCCACC
ACGGAGGGTGCAAAGCCGTATTTCCTTCCGCGCATGCCCTCATGCACCAC
ACGCTGCTAAGCTGTCCGGTCCTGATGGCGGATCACGAGCACATCCGTCG
CTTGCTCAAGGAGGCCGTCCATCTTCTCTCGGATCACTGCCTCAACACCC
CCGCCATTGCTCATTTTGTGCAGAGAGCCCAGGAGGTTGATTCCCGACAT
AGGGCGGCCGCTCGTCAAGTacagcagaagcagcagcagcagcagcagca
gggaggggcaatattggccgaggaggatgacgaggaagaggaggacgagg
acgaagaggacgacgacggggaggaaatggaggagggggacgaggaaggg
gcggagagcgACCAGTCGTCGCGCCACCCGCGCGAGCACGGCCAAGCCAA
CAAGCAGGTCCACCATCCAGAGCACAGGGATGGGTACGAGGGTCCTCGTC
ACCAACATCAGGCCCATGCcccgcgggcgggggcgggcagccATATGCAA
TGGGAACGAGCGGGGagtcagcagcagcagctcagccacaagcagcagca
tccaCACCGGCTAGCCCTGCCAATGACCGTTACCACGCCTGGGTCGTACT
CCCAGCCGCAGGGCATCAGAAGGGAGCTAACCTTGCAGCCGACGGGCAGC
GCCCCGGACTTGGGGGTGATCAAGGCAGACATGACGGACGACATGGGGGT
tggcttctccttcaccATGACACCGCATGGGACCTTGACGGGGAGCAGCC
GATTCAACGGCTTCGAGAACGCGGATGCCCAGCCTTCCCTGCTGACGCCG
GGGGCCAATAGCCTCATGTCTCCTAGCTTGGCCTtcgactttccctcctc
gacaaacGAGGCCACCACAGAAGGGATGCCTCCGCAGGCACTGGCTATCT
TTTCTCCGAGCCAGGGGGCCTTTGTCTTTCCGGAACGGTACTGA

Synonyms

Publications