rna5673, rna5673 (mRNA) Nannochloropsis gaditana

Overview
Namerna5673
Unique Namerna5673
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3543
Alignment locationCM002466.1:544187..545437 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g8.2437.mrna
Orig protein idgnl|cribi|Naga_100068g8.2437
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:544187..545437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g8gene5481Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25013.1cds5658Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5673rna5673-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5673 ID=rna5673|Name=rna5673|organism=Nannochloropsis gaditana|type=mRNA|length=3543bp
GCGACGGCCACCACTCCGTCGCCGACACCCAAGGAGCACCCTTTAGGGTA
CTCCTTGGGAACAGGAGGCACTCCCCCGAGGGAATTCCACCGCTCCATTC
AATAATATATTATGCACTTTCTTACTGAGGAGTATTCGTTTGGATTTTAT
CGACTGATGGTCCCGAAACGCATCGTCGGGAAGACAGCATACTGCCTTGT
CCCAAGGAGACTCCTTGACGAGCGTCCGCTCTAATTTATCTCTTTTCCTC
CTCTGTGGTGCGGAAACACCTATATCACGCGGTGAAAACGAAGCTCACAC
ACAAAATTAGTAGTAAAATGCTTGCCAAAGCAGCTTGCCACAAGTTGTGA
CGAGAAGACTTAATTTCTGATCCAGGTGAACGAGGCAGTAGTAAGTAGCA
GCGGTAGCAGTGGCAGTGCATTTGAGACGGACGGAATGGCCAACAGGAGC
AGCAGTTGGAGCGGAGGATATTGTGGAGACTCTGGTGCTCATGGAGGGGA
GGAACAAGCTGCGGGAAACTGTCGACTGCCCACGACGGAAGGGCATCACC
ATGCACATACACATCAAGCCACGAGTGCACTAGAGATGGAGCAATTGCGG
CGGGAGCTCGATGAGATTGAAAATGGCCTTAGCAGAGCGTCCAAGCCTAC
GTATAATATCGAACCACCTCCCTCAAAAGGCAGCCAAATCTGCAGTCCAT
CAGACACCGGAGACCACGTTGCTGCCAAAGCGGACGCAAGCGCCCCTCTC
GCTCGTGCTCCCACAAGCAGAGACCATGGAACCGAAGGCGTGGCACTCCA
GCTTCAAGCAGCCAAGAAGCTTCGAAATCTCCTGTCCACGCACCGGGAAG
TGCTGATCCACGAGGTACTGGAGCGAAATTGGATCCCGCGCCTCCTCGAG
TGGCTCCAGCTCGACCACCCAACAATCCAAGTGGAGGCCCTTTGGGCTTT
GACGAACATCGCGGCAGGCAACACCGAGCACACGAATATGCTGCTGCGAC
ACGATCCAGTGCCAGTCCTGGTCAAGTTGCTGGAGAGTCCCCACGAGGAC
GTGCTGGAACAGGCCATCTGGGTGCTGGGGAACATCGCGGGGGAGGGTGC
CGCCTCTCGTGACACCGTCTTGGCCAACGGAGCGTTGGAACCCCTCGTCC
ACTGCATCCTCCAGCATCAGTGTAGTCAAAAAGTTCTTCGTATTGGTTCC
TGGGCGCTGAACAATCTCTGCGACCCCACGCCGCGGCCCACCCTGGATAT
TGCCGTGCTTATGCCCGTCCTTCTCACACTCATTCAGTGCCCTGATTCGG
AGGTTCTGAGTCACACCTGCTGGGCGCTATCCCACCTTTGTGACGGACCC
TCCGCCCACATAAAGGTTGTTGTGGAAGCGAACCTGTGCGGGCGGCTCGT
CGAGCTCTTGCAACACCGGTCTTGGCGCGTGACCAAGCCCGCGTTGAGGA
CGATCGGGAACATCGTCTGTGCCGAGGACGAGGTGGACTATACGCAGTAT
ATATTGGAGGCAGGAGCCGTACCATACCTACGGGCTCTAATCAGCCATAG
CAACCGCGAAATTCAAAAAGAAGCTTGTTGGACGCTCTCAAACATCGCGG
CAGGGACCTGCGATCAGATCCAGACCGTGTTGGACAGTGGGGCCATCCCT
CTCTTGGTGGAACTCGCCCTCCAGCCTCCCGCCGAGACGGACGCAGAGGT
CCGGAGTGAAGCATGTTGGGTGGTCTTGAATGCGACCTCGTGCGGTTCGG
ACGCCCAGATTGAATTCCTGGTGCGTCAAGGGTGTGTGCAGGTCTTAGGG
GACTTGCTGGGGGAGGCGAACATGGTGATGATGGCGCTGGAAGGCTTAGA
AAGGATGTTACAGGTGGGGGAAGAGGAAGGTTTGAGATCGGGGACGGCGA
ACCCCTACGCGGCCATGCTCCCGGCCGGGAAGATCGAAGAGCTGGAGCAC
CATCGCCAACCGGGGATCGCAAAACGAGCCTCGCGGATCTGGAAGGACCA
CTTCGTCACGTGCGCGATTTGCCAGCAGACGTTTTCCAAGCAGGCGCCGG
ACGTCCGGTTTTGTGGGGAGTGCAAGTGCTACGTCTGCGTTAAATGTAAC
TGCACGGTGTTCCACTTGTCGTATCAAGAAGAACTCTGGAACGAGATGAG
CGTGAAAGAGGCTTCGGCCAAGGAGGCTCTGCAAGCTTCGAAGCGGAACC
GGAAGGCCCGGCGGAAGCAGAAAGAGAAGGAGAAAAAGGCCAAGGCGACG
GGAACTGGGGGAGGGGGAGGTGGTGGCGGAAAGGCCGGGAGCGGGGAGGG
CGGGGGGAAAGAGATCAATGATGAGGAAAAGATGGGGTCTACGACGGGCA
AGGCGTCGGTGGGCGAGGAAAGGGAGGGAAAACCGGGATCGGCCGGGTCA
TTGGCAGAAAACGAGGACTCTTCCTCCTCCTCCTCTGAGGATGATGCATT
GGCTCCCCTCCCCAGGGTCGCGCCGCCAATTGATCATTCGTTGCCGTCTT
CAGCACCACGAAGGGCAGAAAAGAGGGAGAAATCTAAAGCTACGGGCGCG
GGGGTACATGCGGGCGCTGATTTGATGCATTCTGACATTAATGGAGGTAA
GCGCGGCCGAGGGAGAAAGGACATGCTCAAAGAAGAAGCAGGATCAGAGC
ACGAGAAGGCTGGAAGAGAAGACACAACGAGGAAGGGGCCGTCGGCACAG
GACAGAGAAGATGTCTCGCACACCGACTCGAGGAACGCGCTGCCTTCGAA
TGGGGTTCAAGCCATCGCATCGACCTCATTGCAGTTCCCTCGGACTGAAG
TCGTGGGACATGAGTCAGCGTTAGTGAACGGTGGTGGCGACGGAGGAAGT
AGCAAGCGGAGGGGGCGGAGACGAGAGGACGCGAGAGTTGACGTAACTGC
GCTTTTGAACACAAGCTTCGTGCCACAATCCTCGCACAAGACTAACAAGA
ATAAGTCGGTCCCGGAATCTAGTGCTGAGAGGATGCTTGTCGATGCAGAG
GAAAGAGGTGGCCTTGGCCCGGATGCGAAGGGAGGAGGAGGAGGAGCTGT
AGGAGCCGGTGGCGGCATTGATCTCGTAGACTACCTACAATCCACTGGGT
CAATAATTGCGTTGTCGAAATTTCTTGACGAAGAAGACGAGGAGCAGCAT
GATGATGATGATGGGATAAGAGAGGGAGGGATTGCGGGTGGTTTGTGCGG
GTGAGGAGTATCGGTGGGGTATACACAAATGTGATTTGATTCATGCCCAC
GTTGTATCCATGTAATTTGCCCGTTGGGAGCGCATGTCGTGCGATGTCTA
TTTCGAGCCAATCTTTCTTTAAAGAGAAAGATAAGTGGGGTAGAACAATT
GTCATGCTTGATCACGCATCAAGAAAGTCAAGCAAACATTAAGGGGACAA
TAAACATTGCGCCAACTATGGAACAAGATCCATAGTTATGACTTTTATTG
CGTTGGGCATCATTGCTCCATAATTCTAAAGCCGGAACCAGCAAATTGTG
TCAGTATTAGTGGTAGAAATCAGCGCATTCAATTCAATCTCAG
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protein sequence of rna5673

>rna5673-protein ID=rna5673-protein|Name=rna5673|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MALWHIIRAHGRQLRLGFGSRWLSDHRSTFENKEEALEKQYMYEQNKKTM
EQFTAKMVARENQQGVAKQELCEILGHSIPEDVMKKLFAWKDKHSNRDVH
VK
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mRNA from alignment at CM002466.1:544187..545437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5673 ID=rna5673|Name=rna5673|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at CM002466.1:544187..545437- (Nannochloropsis gaditana)
GGACGGTGTTCTGTTGGCAAGAAACCCAATTCCTGCGTGAAGTATAAGGG
GAATGTGTCCGTGAAGCAATCGATAACTTTGACTATTATGCTTAATCCCA
TCTTCAAGTTAGTATCCAACGACACGAGCAGCAAGCTTTCTCTATGACTT
TGCTTAAAACCTCCTCACGCCCCTCTCGTCCTCCTTGGACTCAATATTTT
TCTATGGGAGCAAAACGCAAATCTCTCGTCTTATGAAAATATTAACAATT
TTTGTTGCAAATCAATAGTCAAAAGTCAGCCATCTGTAATATGGCTCTGT
GGCATATCATCCGGGCGCACGGTCGTCAGCTTCGCCTGGGTTTTGGATCC
CGCTGGCTTTCTGACCATCGCTCAACATTTGAGAATAAAGAGGAAGCTTT
AGAGAAGCAATATATGTACGAACAGAACAAGAAAACTATGGAACAATTCA
CCGCAAAAATGGTGGCAAGGGAGAATCAGCAAGGTGTTGCGAAGCAGGAG
CTGTGTGAGATTCTGGGACACTCTATTCCTGAGGACGTCATGAAAAAGCT
ATTTGCATGGAAAGATAAGCATTCAAATCGAGATGTACATGTAAAGTGAC
TGACTTTGCGCGAGACTCCGGTTGGATATGGTCGAGCGTTTTAAACACAT
TGTCACACGTTTCGAGTGACGAGCGAAGGACAATTGTGATAACCTTGAGT
ATTTCTCGTAGGATTGGTTCAAGAAAGTGCCTTCCTTTAAAAATGACTTC
TTGGGCACAAAGACTGCTGACAAGGAATATCACGCTTGACGCTAAAAGGA
GGACTTAGACATAAGCTCTTTTATGTTTGACGAATGATAGCGGAAGCGCG
GCCACAAAATTCGATCTGTTTTTCAAATATCTAAAGGATCTAAGAGAATA
ATGCTGCACTAAGTGGTAGAGTCGTTTGTTTTTGCTTTGTATCGCGGTCA
CAATTCCTTCGAGTAAGGAATTTTGCAATATGGAGTTACGTGAAACAAAC
ACCTCAACTCGTGTACAAGCCCATGTCGATGGTATACATGGAGGAATAGC
ATATATATTGGGCAGTCTTAAAGATCATAAAGAATCATGTTGCTGATGCA
TAACTTCTTGAGTTTACGCAATGTCTAACAATGTACGCTGAGCTTCTTCT
TCCGCTGCAGTGACCTTCGAGTAGGCGGGCCTCTTTGAAATTGAATAATG
AAAAGACGAAATGTAAGCCGAGAAATTGTGGAGTAAAGAAGCATGTTTTG
A
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Coding sequence (CDS) from alignment at CM002466.1:544187..545437-

>rna5673 ID=rna5673|Name=rna5673|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at CM002466.1:544187..545437- (Nannochloropsis gaditana)
ATGGCTCTGTGGCATATCATCCGGGCGCACGGTCGTCAGCTTCGCCTGGG
TTTTGGATCCCGCTGGCTTTCTGACCATCGCTCAACATTTGAGAATAAAG
AGGAAGCTTTAGAGAAGCAATATATGTACGAACAGAACAAGAAAACTATG
GAACAATTCACCGCAAAAATGGTGGCAAGGGAGAATCAGCAAGGTGTTGC
GAAGCAGGAGCTGTGTGAGATTCTGGGACACTCTATTCCTGAGGACGTCA
TGAAAAAGCTATTTGCATGGAAAGATAAGCATTCAAATCGAGATGTACAT
GTAAAGTGA
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Synonyms
Publications