rna5670, rna5670 (mRNA) Nannochloropsis gaditana

Overview
Namerna5670
Unique Namerna5670
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2431
Alignment locationCM002466.1:537205..537790 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g5.2444.mrna
Orig protein idgnl|cribi|Naga_100068g5.2444
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:537205..537790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g5gene5478Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5670rna5670-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25020.1cds5655Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5670 ID=rna5670|Name=rna5670|organism=Nannochloropsis gaditana|type=mRNA|length=2431bp
GGCTCAACTTCTTTTTTTCCCATCCTGGATGTTCACTTTACAGGTGTAAT
TTTTGGCTTACGTGTGCTGTGTATAAGTACCGGCTGCTATTCGCGTTTTC
GTCCTGTCCTTTATAGAGGGAACCATCAGCTGATTTGACAACGACACGCA
CCCCCTTGCATCTATAGACTATTCTCACCGCTTTTCTGCCTGGAAGAGGC
GACATCGGCTATGCTTAGCGGTGCACTTAACATGAGACCATTGTTGGGAC
GGACGATGGTCACAAGCAGGCAGCAATTGCATCGCTTACCGCTTGCGCAC
AAGACCACAACACAGGCGTCGCCCCTCCTGCACCTGCCTCGTTCTCGAGC
AGCTCCGCGTCGACGCCTGACCACTGACAGCAAAACGTCCACTGGCAATT
CGTCCTCACAGAAACCACCAAGTACGGGGGCGGCGGCTCTAAAGCGGGCC
GACAAATACTTGGGACTGAAATTGATGGGAGGGGTACTGGGAGCCTGCGT
CGGGGTGGGGGGAATCGTGTACTACTACGCTGTTGCCGAGGACCGCGCGT
TAAAAAAAGCCATGGAAGACCCGTCTATCGCGGTCGAACCGCCTCCTCCC
GAGTTTGTGCACCCGTACCTGGAGAAACCCTGGTGGTGGCGAGCCCTGTT
CGCTATTGGCCGGGCTGTGTATGTGGCCTCTGTCTTCTTGCCCGTCGCGG
GGATGGGTCTGGTCTCTGTCTACATATTCCCCGACTCGAAAAAGTGGCGC
GAACGTTTCCTGAACGCCTTGATCCGCGGCATGGAGCGCGCCGGGTGCTG
CTTCATGAAACTCGGTCAGTGGATCTCCATGCGCCCTGACATGTTCCCGC
GCGACGTGGTCAAGACCATGGCCCGGCTCAGGGACGGCGTGCCCCCGCAT
GCCTTCAAACACACCCAGGAGTCGATCCGGGTGTCCTTTGGCAAGGAGAT
CGAGGACATATTCGAGTCCTTCGAGGAAACCCCCATCGCTTCCGGCACTG
TCGCCCAGGTGCATCGTGCGCGCCTACGGCCGGCGTACGCCATCCACGGC
TCGGTTCAGGATGTGGCGGTCAAGGTCCGCCACCCGAATATACTCAACGA
GACCTTCCTGGATTTGGACTTGATCTTTGGCTTCGTGGACACCTTCTTTC
CGGAGAAATACTCGATGCCCTGCTCCCAGGACGAGCTCACCCACATTCTG
CGCCAGCAGCTTGATTTGCAGTGGGAGGCCTACAATTTGTATAAGTTTTC
CACCAACTTCAGGCACGAGCTCCAGTCTGGCCTCGTGCATTTCCCACAGG
TGAGCAAGGAGCTGTGCTCGGATTCGATCCTGGTCGAAAGCTGGGTGGAG
GGAGCGACGATCGCCACCGTCTTCTCGGATATCGAGGGAGGTGAAGAGCA
CACGTGGTCGTCCAGCAAGACACTGACGGACAATTTCTCGGAGGCGGTCA
TGGCCAAGAAGAAGCAGCTGGCGAAAGTCCTTTTCGACATGAACGTGAAG
ATGTTCCTCCGGGATAATTACGTGCACGGGGATATGCACGCCGGAAACTT
GATCGTGTCCATGGAGGACGGGCGCGTCACCGTAATCGACGCGGGGCTGA
TCACATCTCTCAAGCCCGACGTGGCGAACCCTTTCGGAGACTTCTTGCGA
GCATTGTGCAATTCTGACGTAGACACGATCGTGAGCAAGATCCTCCAATT
CAACGTCGGGAAAGTCCCGGTTGACAAGGCAGCGTTTCGGGACAGGATCA
AGGAGATCACGGAGCATTTCAAAAACCAGGAGGAAGACGACGATGCTCGA
CCTGGAAGCGTCGTGAAACAGACGTCGGCTCCCAGCAAGGTCGGTCGCGA
TGGGCGCTACGCCTTGGGGGATGTGGTGGGGGAGATCTTGCTGAGTTTGC
AGCGCTTCAAAATCGTTTTACGCGGGGACGTGGCGGCATCGATCATGACG
ATCTCGGTATCGGAAGGCTTGATCTTGCAATTGGACCCCGATTTCGACAT
GGTGCGGCAAGCTTTGCCATTCTTTGTTCGCTATAAGGGGTGGAGCACAG
CCGAAGCTGTGATGCGGGGACGGGAGTCCCCTACCCCAACGAACGCGCCC
TCGTCCCCAGAAACTGGACAGTCCACGGTGGCAGCATAACGAGCAAGGGA
TAAATAAAGGGTCAAGCCTTTGACAATCAAATTGTTTCACTTAAGCCATC
AGTGAGAAACCGCAAAGCAAGTTCACACACAACACCCCCAAATCAACAAG
GGTCATGTAGAGTCCCGAGTGAGCCCTTTCACATCATGAAGGTTCATGTC
GTGAGAAGGTTACAGTTGGACAAGCTACGCCACCCCTCGGTGGCCTTGCT
GTGCATTCAAACGTAATTTTGTCTCCGAAGACGACAGACGTGAGCTGGCG
ACGAAAGAACCAAGTGGAAAGCGTGATGACC
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protein sequence of rna5670

>rna5670-protein ID=rna5670-protein|Name=rna5670|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MLQLTTVKRRKKENIERSRGGPCGFPRRAEGRKGRYGKVTRKTKSEILAN
YHIKNTKDIREALRDAHVEDETICTARAHNQEAKRNKRDVEINGATEREA
CAGMGLARRRHKGILSECGNVKPVLRAWSRKCDCGRLKKEKPALYVSDSL
KKEEDGRKQI
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mRNA from alignment at CM002466.1:537205..537790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5670 ID=rna5670|Name=rna5670|organism=Nannochloropsis gaditana|type=mRNA|length=586bp|location=Sequence derived from alignment at CM002466.1:537205..537790- (Nannochloropsis gaditana)
ATGCTTCAACTGACCACGGTGAAAAGGAGGAAAAAGGAAAATATTGAGCG
GAGTAGAGGAGGCCCTTGTGGTTTCCCGCGACGTGCAGAGGGGAGGAAGG
GTCGATATGGCAAGGTGACGCGAAAGGTCTTCTGAAGGCCCTCCATGGTC
CCGTATGGTGTGGCGTCAGACAAAGTCTGAGATCCTTGCAAATTACCACA
TCAAAAATACAAAAGACATCCGCGAGGCATTAAGGGATGCGCACGTCGAG
GATGAGACAATATGCACTGCACGTGCGCATAATCAAGAGGCGAAAAGAAA
TAAGAGAGACGTTGAGATCAATGGGGCAACTGAGAGGGAGGCATGTGCAG
GGATGGGATTGGCACGCAGAAGACACAAGGGGATACTAAGCGAGTGCGGA
AACGTAAAACCTGTCTTACGCGCATGGTCCCGAAAATGTGACTGCGTCTG
AGGAAGTGGAGGAGTGCAAGCCGAGAATCCAATGTGGAGGACAGAGGAAT
GAAAGGGTAGGCTGAAAAAGGAAAAACCTGCCTTGTATGTATCGGACAGT
CTCAAGAAGGAAGAAGATGGAAGGAAACAAATATAA
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Coding sequence (CDS) from alignment at CM002466.1:537205..537790-

>rna5670 ID=rna5670|Name=rna5670|organism=Nannochloropsis gaditana|type=CDS|length=1449bp|location=Sequence derived from alignment at CM002466.1:537205..537790- (Nannochloropsis gaditana)
GGTAGGCTGAAAAAGGAAAAACCTGCCTTGTATGTATCGGACAGTCTCAA
GAAGGAAGAAGATGGAAGGAAACAAATATAAACAAAGTCTGAGATCCTTG
CAAATTACCACATCAAAAATACAAAAGACATCCGCGAGGCATTAAGGGAT
GCGCACGTCGAGGATGAGACAATATGCACTGCACGTGCGCATAATCAAGA
GGCGAAAAGAAATAAGAGAGACGTTGAGATCAATGGGGCAACTGAGAGGG
AGGCATGTGCAGGGATGGGATTGGCACGCAGAAGACACAAGGGGATACTA
AGCGAGTGCGGAAACGTAAAACCTGTCTTACGCGCATGGTCCCGAAAATG
TGACTGCATGCTTCAACTGACCACGGTGAAAAGGAGGAAAAAGGAAAATA
TTGAGCGGAGTAGAGGAGGCCCTTGTGGTTTCCCGCGACGTGCAGAGGGG
AGGAAGGGTCGATATGGCAAGGTGACGCGAAAGGGTAGGCTGAAAAAGGA
AAAACCTGCCTTGTATGTATCGGACAGTCTCAAGAAGGAAGAAGATGGAA
GGAAACAAATATAAACAAAGTCTGAGATCCTTGCAAATTACCACATCAAA
AATACAAAAGACATCCGCGAGGCATTAAGGGATGCGCACGTCGAGGATGA
GACAATATGCACTGCACGTGCGCATAATCAAGAGGCGAAAAGAAATAAGA
GAGACGTTGAGATCAATGGGGCAACTGAGAGGGAGGCATGTGCAGGGATG
GGATTGGCACGCAGAAGACACAAGGGGATACTAAGCGAGTGCGGAAACGT
AAAACCTGTCTTACGCGCATGGTCCCGAAAATGTGACTGCATGCTTCAAC
TGACCACGGTGAAAAGGAGGAAAAAGGAAAATATTGAGCGGAGTAGAGGA
GGCCCTTGTGGTTTCCCGCGACGTGCAGAGGGGAGGAAGGGTCGATATGG
CAAGGTGACGCGAAAGGGTAGGCTGAAAAAGGAAAAACCTGCCTTGTATG
TATCGGACAGTCTCAAGAAGGAAGAAGATGGAAGGAAACAAATATAAACA
AAGTCTGAGATCCTTGCAAATTACCACATCAAAAATACAAAAGACATCCG
CGAGGCATTAAGGGATGCGCACGTCGAGGATGAGACAATATGCACTGCAC
GTGCGCATAATCAAGAGGCGAAAAGAAATAAGAGAGACGTTGAGATCAAT
GGGGCAACTGAGAGGGAGGCATGTGCAGGGATGGGATTGGCACGCAGAAG
ACACAAGGGGATACTAAGCGAGTGCGGAAACGTAAAACCTGTCTTACGCG
CATGGTCCCGAAAATGTGACTGCATGCTTCAACTGACCACGGTGAAAAGG
AGGAAAAAGGAAAATATTGAGCGGAGTAGAGGAGGCCCTTGTGGTTTCCC
GCGACGTGCAGAGGGGAGGAAGGGTCGATATGGCAAGGTGACGCGAAAG
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Synonyms
Publications