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Properties
| Property Name | Value |
|---|
| Product | Mitochodrial transcription termination factor |
| Orig transcript id | gnl|cribi|Naga_100068g2.2435.mrna |
| Orig protein id | gnl|cribi|Naga_100068g2.2435 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:530850..533098 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5667 ID=rna5667|Name=rna5667|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp
CTAAGACGTTGTCCTGCCTCCGGGCTGCTTGACGCCAAGGAAAAGGCTGC
AGCGTGCCCTGTTTGTGGTTCATTGATGGAAAATGCACGCTTGAGATACC
AAAGCAATATGGCTGGCGGGTTGGTCCGGTGTCGGGGAGGATTGGATCAA
AATTAAGTATTGCTGCCTGTTTAACTCTGTTGCTTCTTTCCCTCCTTGGC
GAGAAGACGCTAGCGTTGGAAGCACCCCCGTAAAAACGGTATTATAAAAC
ATGCACAGCAAGTCAAACTGCCTGGCACATTTGATCACGTAAAGTGACGC
TAAGCTGTAGACATAAAAGTTCTTCCGCCACGACGTATATTCTCTTATTT
TTCCTTTTATCCAGGCATCGCACAAGAAATACGACAACAGGGTCGGCAGC
ATTTCCAGTGAAAGGGCCGGTACCGCATACATATCGCATCAAAATGGACT
TGGACTTGAAGAAGCTGAAGGTCGACCAGCTCCGTGAGGAACTGAGCAAG
CGTGGGCTCGACACAAAGGGCAAAAAGGATGAGCTGCAAGAGCGTCTTCA
GAATGCAATCGATACAGAAATGTTAGACGCCATCGACGAAGAAGACGATG
TAGGCGCACCTCCTCCCGCTGCCCTCCCTCCTTTATCGGCAGCCCCCCCC
GCGCTGGCACCAGCACCAGTGCCCGCATCCCACACAAAGACTGCACCGTC
CCCTCAGCCACGCGCTCCATTCCACGAGAACAGTGCCGCATCCGAGACGG
CCGCGTCAACCGCCCCTACATCTGCTCCTGCTTCCATGCCTACGCCAGCC
GCAGTGACGGGGACGACTGCTCCTGCGAGCCAGGACAAGACGGAAGAGAC
AGAGGAAGAAAAGAAGCGACGACGTGCAGAGCGCTTCGGCATTCCGCTGT
CAGAAGAGGCCAAGAAGAAGGCCCGGGCAGAACGCTTCGGAGTGGTTAAA
CCAGCCAATGCGACAGCTTCCAATCTGTTAAAAGGTGCGATCGAAAGCAA
GGGTACCTCGAAAGCGGGACCTTTGCAAGGCGTTCCCGTGGTGGATGCTG
CGGAAGAGGCCCGGCGACGCGCGCGCGCGGCACGCTTTGGCATCCCTGAT
CCAAAGCTGGAGGAAGAAAAGAAAGCAGAGCGCGCGCGGCGATTTGCGGA
CCCGGCGAAATTGGAAGAAGAAGCCAAGAAGAAAGCACGGATGGAGCGAT
TTGGAGCAACCACGTCGTGATGGGCTGATTGCTGGATGTGCTCAGCTCAA
AGGTGTCAAGCGTGGGGTATGACGTGCAAAAGGAGAAAACAGGGGATCTA
ACGAATGCAGCGCGATGCTCCCAAACTGGCGGAGCGAGACTGGTGACTAT
AAGGTGTTCCTGTATGTACGCATAAAGGTTTGCGGTCCATTCAAGAAAAA
CGGTCCTCAGTATTCCGGAAGGTTTAAAGCGAGAGGGATCATTGAAATCG
AATGAAGAGCAATGTCAGAACTAAAGCATGACCTGAGCACAGCTTCCGCA
TATTTAAATTCGCAAAGAAGATGACAATCGGAGCCAGAGAT back to topprotein sequence of rna5667 >rna5667-protein ID=rna5667-protein|Name=rna5667|organism=Nannochloropsis gaditana|type=polypeptide|length=609bp
MRACHLKFCAFFVATLLRFPSGFHVPTPQLATFKSMRNQYHGSNSPIIFV
TKDNDCSINSQSDPELALSEVDSLQRCLTPAEMEDAKDASDEWRRAELAK
SPKEAVERKSDDKLVSENRGNSRGLSGKETAWDQFIEILEPTSAPTSSAS
TPSAKTPAATTRYYMKTPVPYYFLRDELGVSESNMLRISLDHGQVLALSV
ERNLRPKVAWLRTTLRLTQPEAAALVGSSPGLLLLSIEDNLAPKLSWLQE
DLGLAFRDRRNLIVRCPQILTTSTGSLLMKLAFFQDDLGMSQADVQKALR
LMPALLMLSLDTLMDKVEFLIAAFSIEITDVGSLLVRAPALFFQSIEDGL
KPKARFLRRDLGLDPPDMASLLRRMPRALNYNVVRRGRPFLQYLTGQPLN
LSKEEVARMVLRSPSLLSTDVGSPRFLHLMDALQGATGLPPGPAFASLLQ
RFPMVLSFTAARLQASLDVLVRDLGCDAGDVALVLQKHPQLVGYRPEAVR
LKLSLLRDVYGLEDLGAAKPAVLKAPALVSYSLDTRLRPRLEMAAAAGVP
LERAVTWLPLTEAKFEERVGRSSTQAISLTDTPLLRQRPNARLRKILRTP
KAVKGALLP back to topmRNA from alignment at CM002466.1:530850..533098+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5667 ID=rna5667|Name=rna5667|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp|location=Sequence derived from alignment at CM002466.1:530850..533098+ (Nannochloropsis gaditana)
GACACCGGACCAACCCGCCAGCCATATTGCTTTGGTATCTCAAGCGTGCA
TTTTCCATCAATGAACCACAAACAGGGCACGCTGCAGCCTTTTCCTTGGC
GTCAAGCAGCCCGGAGGCAGGACAACGTCTTAGCCATGGCCGTCATATGC
TGTCTCGATGCTACCGCTTTGAATTGCAACGCCAGGCGCCCGCAACCGAC
GCCGCACCCTCACTGAGACACACTGACAACACACAAACAGAAAAAAGTGG
TGTTGACGAATGGAAAAATGCGCGCGTGCCATCTAAAATTCTGCGCCTTC
TTCGTCGCTACCTTGTTgcgcttcccctccggctTTCATGTGCCCACTCC
GCAATTAGCAACCTTCAAGTCGATGCGCAACCAATATCATGGGAGCAACA
GCCCAATAATTTTCGTAACCAAGGATAATGACTGCAGTATCAATAGCCAG
AGCGATCCGGAGTTGGCTTTGTCGGAAGTTGATTCCTTGCAAAGGTGCTT
GACTCCAgcggaaatggaggacgCCAAAGATGCCAGCGACgaatggagga
gagcagaGCTAGCCAAAAGTCCAAAAGAGGCGGTTGAGAGGAAGTCCGAC
GATAAGCTTGTCTCCGAGAACAGAGGGAATTCACGCGGACTGAGTGGCAA
GGAGACGGCGTGGGATCAGTTTATTGAAATCCTCGAACCGACCTCCGCTC
CTACttcgtccgcctccacgccctccgccaaGACTCCAGCCGCCACCACA
CGGTACTACATGAAGACGCCCGTGCCGTACTACTTCCTTCGCGACGAGCT
GGGTGTCAGCGAAAGCAATATGCTGCGTATCTCTCTCGACCACGGGCAAG
TCCTCGCTTTGAGCGTGGAAAGGAACCTTCGACCCAAAGTAGCCTGGCTC
CGGACTACGCTGCGTCTTACGCAGCCGGAAGCAGCCGCCTTGGTAGGGAG
TAGTCCTGGCCTGCTCTTGCTCAGCATCGAGGACAATCTGGCCCCCAAAC
TGTCATGGCTACAAGAGGACCTGGGCCTCGCCTTTCGAGACCGGCGCAAC
TTGATCGTGCGATGCCCGCAAATTTTGACCACCAGCACGGGGAGCTTGCT
CATGAAgctcgccttcttccaggaTGACCTGGGCATGTCGCAGGCGGACG
TCCAGAAGGCCTTGCGCCTtatgcccgccctcctcatgCTCAGCCTGGAC
ACTCTGATGGACAAGGTCGAGTTCCTGATCGCGGCCTTCTCCATCGAAAT
CACCGACGTGGGTTCTCTCCTTGTCCGTGCCCctgccctctttttccagt
CCATTGAAGATGGACTCAAGCCTAAGgcgcgcttcctccgccgagaCCTC
GGCCTCGACCCCCCGGACATGGcgagcctcctccgccgcatGCCCCGGGC
CCTGAACTACAACGTGGTCCGCCGAGGCCGACCTTTTCTGCAGTACCTGA
CAGGGCAGCCGCTGAATCTTAgtaaggaagaggtggcccGCATGGTCCTG
CggagcccctccctcttgtccacCGACGTGGGCAGcccgcgcttcctcca
cctgaTGGACGCACTCCAAGGTGCCacaggcctcccccccggccccgcct
tCGCCTCGCTCCTTCAACGCTTCCCCATGGTCCTGTCTTTCACAGccgcc
cgcctccaggcCAGCCTGGACGTGCTGGTCCGAGACCTGGGCTGCGACGC
CGGAGAcgtcgccctcgtcctccagaAGCACCCGCAGCTCGTAGGCTACC
GGCCGGAGGCCGTCCGCCTCAAGCTCTCCCTGCTCCGGGACGTATACGGA
CTCGAAGACCTGGGTGCGGCCAAGCCTGCCGTCCTCAAGGCGCCGGCCTT
AGTCTCCTACAGCCTGGACACCCGGCTCCGGCCCCGCTTggaaatggcgg
cggcggcgggggtgcCGCTTGAGCGGGCGGTTACCTGGCTGCCCTTGACC
GAGGCGAAGttcgaggagagggtgggcaGAAGCAGCACCCAAGCCATCTC
TTTGACCGATACGCCGCTCTTGCGTCAACGGCCCAACGCCCGTCTGCGCA
AAATCCTCCGGACACCGAAGGCGGTCAAGGgggctctccttccctgaaGC
AGTGTGAGCGCGTGCCAGTGGAAGACACAGTAGCGGGATGGagaacaaga
gggaggaaaggatggtgTGATCCGGTCTTTTCAAAATATGGTGAACCCTT
TTATCCAAATAAATCATGTACAGCACGAAAAGTAAATAGCCATAAAACA back to topCoding sequence (CDS) from alignment at CM002466.1:530850..533098+ >rna5667 ID=rna5667|Name=rna5667|organism=Nannochloropsis gaditana|type=CDS|length=1830bp|location=Sequence derived from alignment at CM002466.1:530850..533098+ (Nannochloropsis gaditana)
ATGCGCGCGTGCCATCTAAAATTCTGCGCCTTCTTCGTCGCTACCTTGTT
gcgcttcccctccggctTTCATGTGCCCACTCCGCAATTAGCAACCTTCA
AGTCGATGCGCAACCAATATCATGGGAGCAACAGCCCAATAATTTTCGTA
ACCAAGGATAATGACTGCAGTATCAATAGCCAGAGCGATCCGGAGTTGGC
TTTGTCGGAAGTTGATTCCTTGCAAAGGTGCTTGACTCCAgcggaaatgg
aggacgCCAAAGATGCCAGCGACgaatggaggagagcagaGCTAGCCAAA
AGTCCAAAAGAGGCGGTTGAGAGGAAGTCCGACGATAAGCTTGTCTCCGA
GAACAGAGGGAATTCACGCGGACTGAGTGGCAAGGAGACGGCGTGGGATC
AGTTTATTGAAATCCTCGAACCGACCTCCGCTCCTACttcgtccgcctcc
acgccctccgccaaGACTCCAGCCGCCACCACACGGTACTACATGAAGAC
GCCCGTGCCGTACTACTTCCTTCGCGACGAGCTGGGTGTCAGCGAAAGCA
ATATGCTGCGTATCTCTCTCGACCACGGGCAAGTCCTCGCTTTGAGCGTG
GAAAGGAACCTTCGACCCAAAGTAGCCTGGCTCCGGACTACGCTGCGTCT
TACGCAGCCGGAAGCAGCCGCCTTGGTAGGGAGTAGTCCTGGCCTGCTCT
TGCTCAGCATCGAGGACAATCTGGCCCCCAAACTGTCATGGCTACAAGAG
GACCTGGGCCTCGCCTTTCGAGACCGGCGCAACTTGATCGTGCGATGCCC
GCAAATTTTGACCACCAGCACGGGGAGCTTGCTCATGAAgctcgccttct
tccaggaTGACCTGGGCATGTCGCAGGCGGACGTCCAGAAGGCCTTGCGC
CTtatgcccgccctcctcatgCTCAGCCTGGACACTCTGATGGACAAGGT
CGAGTTCCTGATCGCGGCCTTCTCCATCGAAATCACCGACGTGGGTTCTC
TCCTTGTCCGTGCCCctgccctctttttccagtCCATTGAAGATGGACTC
AAGCCTAAGgcgcgcttcctccgccgagaCCTCGGCCTCGACCCCCCGGA
CATGGcgagcctcctccgccgcatGCCCCGGGCCCTGAACTACAACGTGG
TCCGCCGAGGCCGACCTTTTCTGCAGTACCTGACAGGGCAGCCGCTGAAT
CTTAgtaaggaagaggtggcccGCATGGTCCTGCggagcccctccctctt
gtccacCGACGTGGGCAGcccgcgcttcctccacctgaTGGACGCACTCC
AAGGTGCCacaggcctcccccccggccccgccttCGCCTCGCTCCTTCAA
CGCTTCCCCATGGTCCTGTCTTTCACAGccgcccgcctccaggcCAGCCT
GGACGTGCTGGTCCGAGACCTGGGCTGCGACGCCGGAGAcgtcgccctcg
tcctccagaAGCACCCGCAGCTCGTAGGCTACCGGCCGGAGGCCGTCCGC
CTCAAGCTCTCCCTGCTCCGGGACGTATACGGACTCGAAGACCTGGGTGC
GGCCAAGCCTGCCGTCCTCAAGGCGCCGGCCTTAGTCTCCTACAGCCTGG
ACACCCGGCTCCGGCCCCGCTTggaaatggcggcggcggcgggggtgcCG
CTTGAGCGGGCGGTTACCTGGCTGCCCTTGACCGAGGCGAAGttcgagga
gagggtgggcaGAAGCAGCACCCAAGCCATCTCTTTGACCGATACGCCGC
TCTTGCGTCAACGGCCCAACGCCCGTCTGCGCAAAATCCTCCGGACACCG
AAGGCGGTCAAGGgggctctccttccctga back to top
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