rna5659, rna5659 (mRNA) Nannochloropsis gaditana

Overview
Namerna5659
Unique Namerna5659
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length471
Alignment locationCM002466.1:514760..515921 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100049g9.2091.mrna
Orig protein idgnl|cribi|Naga_100049g9.2091
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:514760..515921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g9gene5467Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5659rna5659-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25032.1cds5644Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5659 ID=rna5659|Name=rna5659|organism=Nannochloropsis gaditana|type=mRNA|length=471bp
ATGCCAGAGCAGTCCGCCTCGGCGGGGGGCAGGGCTAGCCGGGCTCCACC
CCAAGTTGTTGTCAAAGCAGCCCTTGACCATGTTGCGCGACGAGGCAGGG
AAGGGTGCACGGTTAAGGAGATATGGGATGAATGCGAGGTGGGCTGCGAT
TCTGCTCTGAAGGCATTCTTGTGGCGCGCTCTCCGCCGGCAACGCAAGTA
TGTGTTCTGCAGGAAGACGGCAGTGGCGAGGCCGGGGAGCCAAAGAGGAG
CGATCAAGGGGGAAAAGAATTGCAAAGCGGAAAATTGGGCGCACGCGCCT
CTAAACGCAGAGGAGTTGGACTCCCTGTCTCTGGATGCGTGGGACAGCGT
CATGGTTATTGCTTCCGAAGACCACCGTCTTCGCGCCTTGGGCGCCTTGC
ACGCCTCGGACCTGCCCGAAGAGACCCACGGGACGGAGATCTTGGAGATC
CTGGCCGCCGCGGGCAGCTGA
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protein sequence of rna5659

>rna5659-protein ID=rna5659-protein|Name=rna5659|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MWGQETWRPADGEEGEMEDRREERLPEGFAELISLVEKASVDGVSFQDLC
RDMASIRAALQEGVTGLNHEGKPDDGIGENVVRSCLDEGIRRGHVLRVPS
FFGPRFVSRTQATPWMMVAAPGSATDGTVEDADMSPGLDAVSASGTASIP
DHSSKRRQKESFPATRLALPWLTIPDGQLHVFLLLRALRSLIAAIHTHPG
MSWTAVRSDYLPMFSFSEVLLLLRACVAARVLELKRAAWKRLSARQGPNL
QFHRTIMRRKTRTEILGWKGCRHIRKRAKFVHQVVHMRAGREDASVFDKS
ISVSKVSRTM
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mRNA from alignment at CM002466.1:514760..515921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5659 ID=rna5659|Name=rna5659|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at CM002466.1:514760..515921+ (Nannochloropsis gaditana)
ATGTGGGGCCAGGAAACCTGGAGGCCGGcggacggagaggaaggcgagat
ggaggaccggagggaggagcggttGCCCGAGGGGTTTGCGGAGCTGATAT
CTTTGGTAGAGAAAGCCTCTGTGGATGGGGTATCTTTCCAGGACCTTTGC
CGCGACATGGCGTCGATACGAGCTGCGCTCCAGGAAGGGGTTACGGGCTT
GAATCACGAGGGCAAGCCAGACGATGGGATCGGCGAAAACGTCGTCCGAA
GTTGCCTGGACGAGGGCATCCGGCGCGGGCATGTGCTGCGCGTGCCTTCC
TTTTTTGGGCCGCGATTTGTCAGCCGGACACAGGCCACGCCCTGGATGAT
GGTCGCGGCCCCCGGGTCTGCCACAGATGGGACTGTGGAGGACGCCGACA
TGTCTCCGGGTTTGGACGCTGTCTCCGCCTCTGGAACGGCTTCTATTCCT
GACCACTCTTCGAAGCGTCGCCAGAAGGAAAGCTTCCCTGCCACCCGACT
CGCTCTGCCTTGGTTGACGATTCCCGACGGTCAGCTGCACGtgtttctcc
tcctccgggcccTCCGATCTCTGATTGCCGCGATCCACACCCACCCCGGC
ATGTCCTGGACCGCGGTCCGCTCCGACTATCTGCCCATGTTCTCCTTCTC
GGAggtcttgctgctgctgcgcgCGTGCGTGGCGGCACGGGTGCTGGAGT
TGAAACGTGTGCGACAAGGCAGGCGTGCGTCGCtctgggaagaggggcgg
agacggaTGGTGGCGTGCCTGGGCCCCGACTGGAAATATTTTGATGACCT
ACAGGCGCGACCGGAGCGACGCGACAGGAACGGGATGGGTGgcgacaagg
aaggaagggatgaaaggggagaggaggacacgggggaGCGAGACGTGCTG
GTGGCTTTCCCCGGGGTGCAGAGCATGACGAGACTAGGCAGCTTGGAAGC
GGCTATCCGCGCGGCAGGGCCCAAATCTGCAGTTTCATCGGACGATTATG
CGCAGGAAGACAAGAACAGAAATATTGGGTTGGAAGGGATGTAGGCACAT
ACGCAAGCGGGCGAAATTTGTGCATCAAGTTGTACATATGCGCGCAGGTA
GAGAAGACGCCAGTGTTTTTGATAAAAGCATCTCTGTATCGAAGGTATCG
AGAACCATGTAA
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Coding sequence (CDS) from alignment at CM002466.1:514760..515921+

>rna5659 ID=rna5659|Name=rna5659|organism=Nannochloropsis gaditana|type=CDS|length=1866bp|location=Sequence derived from alignment at CM002466.1:514760..515921+ (Nannochloropsis gaditana)
ATGTGGGGCCAGGAAACCTGGAGGCCGGcggacggagaggaaggcgagat
ggaggaccggagggaggagcggttGCCCGAGGGGTTTGCGGAGCTGATAT
CTTTGGTAGAGAAAGCCTCTGTGGATGGGGTATCTTTCCAGGACCTTTGC
CGCGACATGGCGTCGATACGAGCTGCGCTCCAGGAAGGGGTTACGGGCTT
GAATCACGAGGGCAAGCCAGACGATGGGATCGGCGAAAACGTCGTCCGAA
GTTGCCTGGACGAGGGCATCCGGCGCGGGCATGTGCTGCGCGTGCCTTCC
TTTTTTGGGCCGCGATTTGTCAGCCGGACACAGGCCACGCCCTGGATGAT
GGTCGCGGCCCCCGGGTCTGCCACAGATGGGACTGTGGAGGACGCCGACA
TGTCTCCGGGTTTGGACGCTGTCTCCGCCTCTGGAACGGCTTCTATTCCT
GACCACTCTTCGAAGCGTCGCCAGAAGGAAAGCTTCCCTGCCACCCGACT
CGCTCTGCCTTGGTTGACGATTCCCGACGGTCAGCTGCACGtgtttctcc
tcctccgggcccTCCGATCTCTGATTGCCGCGATCCACACCCACCCCGGC
ATGTCCTGGACCGCGGTCCGCTCCGACTATCTGCCCATGTTCTCCTTCTC
GGAggtcttgctgctgctgcgcgCGTGCGTGGCGGCACGGGTGCTGGAGT
TGAAACGTGCAGCTTGGAAGCGGCTATCCGCGCGGCAGGGCCCAAATCTG
CAGTTTCATCGGACGATTATGCGCAGGAAGACAAGAACAGAAATATTGGG
TTGGAAGGGATGTAGGCACATACGCAAGCGGGCGAAATTTGTGCATCAAG
TTGTACATATGCGCGCAGGTAGAGAAGACGCCAGTGTTTTTGATAAAAGC
ATCTCTGTATCGAAGGTATCGAGAACCATGTAAATGTGGGGCCAGGAAAC
CTGGAGGCCGGcggacggagaggaaggcgagatggaggaccggagggagg
agcggttGCCCGAGGGGTTTGCGGAGCTGATATCTTTGGTAGAGAAAGCC
TCTGTGGATGGGGTATCTTTCCAGGACCTTTGCCGCGACATGGCGTCGAT
ACGAGCTGCGCTCCAGGAAGGGGTTACGGGCTTGAATCACGAGGGCAAGC
CAGACGATGGGATCGGCGAAAACGTCGTCCGAAGTTGCCTGGACGAGGGC
ATCCGGCGCGGGCATGTGCTGCGCGTGCCTTCCTTTTTTGGGCCGCGATT
TGTCAGCCGGACACAGGCCACGCCCTGGATGATGGTCGCGGCCCCCGGGT
CTGCCACAGATGGGACTGTGGAGGACGCCGACATGTCTCCGGGTTTGGAC
GCTGTCTCCGCCTCTGGAACGGCTTCTATTCCTGACCACTCTTCGAAGCG
TCGCCAGAAGGAAAGCTTCCCTGCCACCCGACTCGCTCTGCCTTGGTTGA
CGATTCCCGACGGTCAGCTGCACGtgtttctcctcctccgggcccTCCGA
TCTCTGATTGCCGCGATCCACACCCACCCCGGCATGTCCTGGACCGCGGT
CCGCTCCGACTATCTGCCCATGTTCTCCTTCTCGGAggtcttgctgctgc
tgcgcgCGTGCGTGGCGGCACGGGTGCTGGAGTTGAAACGTGCAGCTTGG
AAGCGGCTATCCGCGCGGCAGGGCCCAAATCTGCAGTTTCATCGGACGAT
TATGCGCAGGAAGACAAGAACAGAAATATTGGGTTGGAAGGGATGTAGGC
ACATACGCAAGCGGGCGAAATTTGTGCATCAAGTTGTACATATGCGCGCA
GGTAGAGAAGACGCCAGTGTTTTTGATAAAAGCATCTCTGTATCGAAGGT
ATCGAGAACCATGTAA
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Synonyms
Publications