rna5641, rna5641 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5641
Unique Name	rna5641
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2034
Alignment location	CM002466.1:469236..470047 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100049g25.2088.mrna
Orig protein id	gnl\|cribi\|Naga_100049g25.2088
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:469236..470047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100049g25	gene5451	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5641	rna5641-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25029.1	cds5626	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:469236..470047+
coding sequence from alignment at CM002466.1:469236..470047+

mRNA sequence

>rna5641 ID=rna5641|Name=rna5641|organism=Nannochloropsis gaditana|type=mRNA|length=2034bp
ATGGACAACGCACACGACAGCAACAGCTATAGCAGCACTACCTCTAGGAG
TGATGTCGCTGCCGCAGGCACCCCAGCCGGAGCCATTCCTTTCCCGGCAG
GAGGCTTTTCTGCGCCTGCAGGGAGCGCAATTTCCTCCGGAGCTACCTCT
CCTGACGCATCCGTGTCCCCAATGACCTCAACTTCCCCGGTTTCCTCGAC
CACTTCGGCATCTAAACGGCTTATTATCCCCCCCTCTCCGGCCATGGCAG
TAGAAATGGGCGTCCTCGAGGATCATAACCACAGTGACACCTCGTCCGCC
ACTGGCTCCATTTCTCAGCCCGAGCTTGATGTAAATTTCAATGCAGCGGT
GTATCACACTCTCAAACAAAAGATTTTCGAGCGCACATTTGTTGTGGCTG
CCCAACTCGCACAGCTTGCCTATTTGACGTGGCGTTGGTACTACTTCATC
GTCACGCCCTCCACACTCTACGTCTCGCTTCCTTTCATCGTCGCCGAGAC
CATGATCGTCCTTGGGGGCTCCTTCATCACCTATTTCCTGGTATGGAACC
AGTGCAAGCGGCCCAAGCTCCGTCTCGTCGATTTGAAGGTGGAGCGTCAG
GAACTTCCCACTGTGGATGTGATGATTCCGTGCTACAACGAGCCAGTCGA
GATCGTGCGTGAGACGACCCTGGCCGCGCTGGCCATGGACTACCCGAAGG
AGAAACTTTCCATTGTTGTATGCGATGACGGCAACTCAGCCGCCATGCGC
GCTTTGATCGCACAGCTCCGCGCGGACATGGGGGGATCCAAAGCCACCCT
CCGCTACATTGCTCGAAAGAAGATCCCTGGGGTGCCTCATCACGCCAAGG
CGGGCAACATTAACAACGCGCTTATGAACGAGGGCACGAGTGGTGATTTC
ATCGTCATTTTTGACTGCGACATGATATGCCGACCTGAATTCTTGCAGTG
TGTTCTACCCCATTTTTACAAGCTGGAGGAGGATGCGCTGGTGATCGACG
AGGAAGTGGCCATGGTGCAGACGCCTCAGTCCTTTGTAAACGTGCCCGAG
GACGACCCCTTGGGTCAACAATACCGCTACTTTTACGGCCCTGTGCTCCA
TGGCTGGGACTCGGTGGGCACCACGCCGTGCTGTGGGACCAACGTAACCT
TCTCCCGCAAGGCCCTCATGAGCGTGGGTGGCTTCACGTACGGCTCTATC
ACGGAGGATTTCCTGACTTCGATGACCCTGCACTCGCACGGGTTTAGGAC
CAAGTACATCCACGAATACCTTGCTAAGGGCTTGAGCCCCGAGAGCGTGC
ACGACTTTATGAAGCAGCGCTTTCGGTGGGCGGCAGGCGGATTGGAGATT
TTCGTCCGGAACAACGCCCTCTTCAAGCGAGGACTGCGCCCGGTGCAAAA
GTTCTTGTACTTCTGGGCGGGATTCAACACTTGTTTAGCCATTCCCATGA
TCTATTTGATCTACCGCCCCATCATCTACCTGCTCGGGCAGTCGTCCGTC
CAGATCGCCACCTTCGACACGGTCCAGTACTTCATCTTTTTCCTCCCGTA
CATGTTCCTCCAGGTTTGCTGCATGAATATCAGCTACCGCGACGTGCCTA
AGATCTACCTCCGCCGCTCTCTTCAGGAGTCCGTCTTCATGCTCTTCTGC
TACGCCCGGGCCGTGATCACGGTGGTGGTGGGTTTCAAACTCGGGTTCAA
GGTGACGAGCAAAGACGCCGAGGCGTCCGAATTCCGCAAGAGCTTCAACT
GGTGCATTCCTTACCTGATTTACTACTTCCTGGGCTCCATGTCGGTGGGG
TTTGGCGTGCTCAACATGTACCGGGCGTACCAGGCACCGGACCACGACCC
CATGTCGATGATGGCGCTCTGTGTCTCGCTTTTCTGGATCTGTTTCATCA
TGTGGCAGATGTGGCCGCCTATTGGCTATCTCCTCCGCTGCTTGGACCCG
CAGCCCGCTGTGGAGAAGGTGGTTGCGGATGATGCTGCCCCTTCCTCGCG
CCAGTCGGCTATCGTCCCGGTGATGGCGCAATAG

protein sequence of rna5641

>rna5641-protein ID=rna5641-protein|Name=rna5641|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MQYMDVCEKSRCRNGSGWSKYAVCEESSGHETAWDHSLWGELGRREEGGV
CTEQRKQSIAHLRSRTTIEWMYQERCKRQVIYHKKLGLEGEGGTERARKE
STVMEMDLMYGMPWGSMHLGKYAFGGATREILSSGSSCRNSSKPGIYQGF
IRRKGRRRSDGAYASWRFCLRFCEVLSQIGMASASGSVRGLVILKCFPAG
GWGIPCCIFYL

mRNA from alignment at CM002466.1:469236..470047+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5641 ID=rna5641|Name=rna5641|organism=Nannochloropsis gaditana|type=mRNA|length=812bp|location=Sequence derived from alignment at CM002466.1:469236..470047+ (Nannochloropsis gaditana)
ATGCAGTACATGGATGTTTGTGAAAAGAGTCGGTGCCGAAACGGGAGTGG
ATGGTCTAAGTACGCTGTGTGTGAAGAGAGCTCGGTGATGTAGCAAAGGA
CACAGGGTTTGTCAAAAGGGTGGACAAGCTATGATATCAAGGGCCATGAG
ACAGCGTGGGATCATTCTCTGTGGGGAGAgttggggagaagggaagaagg
aggcgtgTGTACTGAACAACGGTACACAATAAATGATTGAATATTCAAAA
TGGTAATCTTGACCATGCCTTATTACACTTCCGGGCGGGATCGGGAGCAA
ACAAAGCATCGCACACCTGCGCAGCCGCACAACGATTGAGTGGATGTACC
AGGAACGGTGCAAGAGGCAGGTCATTTACCACAAAAAActggggttggag
ggggagggaggaacagaaAGGGCGCGAAAAGAAAGCACAGTGATGGAAAT
GGACTTAATGTATGGAATGCCTTGGGGAAGTATGCATTTGGGGAAGTATG
CATTCGGCGGAGCAACTCGAGAAATTTTGAGCTCAGGCTCTAGTTGTAGG
AATTCATCGAAACCGGGCATCTATCAGGGATTCATGTACTTCGCAAGGGG
GCTGACAGGCAAACGTACTCCTAAGCagacggagaaagggaaggaggagg
agcgacggGGCATATGCCTCCTGGAGGTTCTGTCTCAGGTTCTGTGAGGT
TCTGTCTCAAATCGGGATGGCCTCTGCTTCAGGTTCAGTACGCGGTCTTG
TCATCTTGAAATGTTTCCCAGCAGGGGGCTGGGGCATACCATGTTGCATA
TTTTATCTTTGA

Coding sequence (CDS) from alignment at CM002466.1:469236..470047+

>rna5641 ID=rna5641|Name=rna5641|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002466.1:469236..470047+ (Nannochloropsis gaditana)
ATGCAGTACATGGATGTTTGTGAAAAGAGTCGGTGCCGAAACGGGAGTGG
ATGGTCTAAGTACGCTGTGTGTGAAGAGAGCTCGGGCCATGAGACAGCGT
GGGATCATTCTCTGTGGGGAGAgttggggagaagggaagaaggaggcgtg
TGTACTGAACAACGCAAACAAAGCATCGCACACCTGCGCAGCCGCACAAC
GATTGAGTGGATGTACCAGGAACGGTGCAAGAGGCAGGTCATTTACCACA
AAAAActggggttggagggggagggaggaacagaaAGGGCGCGAAAAGAA
AGCACAGTGATGGAAATGGACTTAATGTATGGAATGCCTTGGGGAAGTAT
GCATTTGGGGAAGTATGCATTCGGCGGAGCAACTCGAGAAATTTTGAGCT
CAGGCTCTAGTTGTAGGAATTCATCGAAACCGGGCATCTATCAGGGATTC
ATacggagaaagggaaggaggaggagcgacggGGCATATGCCTCCTGGAG
GTTCTGTCTCAGGTTCTGTGAGGTTCTGTCTCAAATCGGGATGGCCTCTG
CTTCAGGTTCAGTACGCGGTCTTGTCATCTTGAAATGTTTCCCAGCAGGG
GGCTGGGGCATACCATGTTGCATATTTTATCTTTGAATGCAGTACATGGA
TGTTTGTGAAAAGAGTCGGTGCCGAAACGGGAGTGGATGGTCTAAGTACG
CTGTGTGTGAAGAGAGCTCGGGCCATGAGACAGCGTGGGATCATTCTCTG
TGGGGAGAgttggggagaagggaagaaggaggcgtgTGTACTGAACAACG
CAAACAAAGCATCGCACACCTGCGCAGCCGCACAACGATTGAGTGGATGT
ACCAGGAACGGTGCAAGAGGCAGGTCATTTACCACAAAAAActggggttg
gagggggagggaggaacagaaAGGGCGCGAAAAGAAAGCACAGTGATGGA
AATGGACTTAATGTATGGAATGCCTTGGGGAAGTATGCATTTGGGGAAGT
ATGCATTCGGCGGAGCAACTCGAGAAATTTTGAGCTCAGGCTCTAGTTGT
AGGAATTCATCGAAACCGGGCATCTATCAGGGATTCATacggagaaaggg
aaggaggaggagcgacggGGCATATGCCTCCTGGAGGTTCTGTCTCAGGT
TCTGTGAGGTTCTGTCTCAAATCGGGATGGCCTCTGCTTCAGGTTCAGTA
CGCGGTCTTGTCATCTTGAAATGTTTCCCAGCAGGGGGCTGGGGCATACC
ATGTTGCATATTTTATCTTTGAATGCAGTACATGGATGTTTGTGAAAAGA
GTCGGTGCCGAAACGGGAGTGGATGGTCTAAGTACGCTGTGTGTGAAGAG
AGCTCGGGCCATGAGACAGCGTGGGATCATTCTCTGTGGGGAGAgttggg
gagaagggaagaaggaggcgtgTGTACTGAACAACGCAAACAAAGCATCG
CACACCTGCGCAGCCGCACAACGATTGAGTGGATGTACCAGGAACGGTGC
AAGAGGCAGGTCATTTACCACAAAAAActggggttggagggggagggagg
aacagaaAGGGCGCGAAAAGAAAGCACAGTGATGGAAATGGACTTAATGT
ATGGAATGCCTTGGGGAAGTATGCATTTGGGGAAGTATGCATTCGGCGGA
GCAACTCGAGAAATTTTGAGCTCAGGCTCTAGTTGTAGGAATTCATCGAA
ACCGGGCATCTATCAGGGATTCATacggagaaagggaaggaggaggagcg
acggGGCATATGCCTCCTGGAGGTTCTGTCTCAGGTTCTGTGAGGTTCTG
TCTCAAATCGGGATGGCCTCTGCTTCAGGTTCAGTACGCGGTCTTGTCAT
CTTGAAATGTTTCCCAGCAGGGGGCTGGGGCATACCATGTTGCATATTTT
ATCTTTGAATGCAGTACATGGATGTTTGTGAAAAGAGTCGGTGCCGAAAC
GGGAGTGGATGGTCTAAGTACGCTGTGTGTGAAGAGAGCTCGGGCCATGA
GACAGCGTGGGATCATTCTCTGTGGGGAGAgttggggagaagggaagaag
gaggcgtgTGTACTGAACAACGCAAACAAAGCATCGCACACCTGCGCAGC
CGCACAACGATTGAGTGGATGTACCAGGAACGGTGCAAGAGGCAGGTCAT
TTACCACAAAAAActggggttggagggggagggaggaacagaaAGGGCGC
GAAAAGAAAGCACAGTGATGGAAATGGACTTAATGTATGGAATGCCTTGG
GGAAGTATGCATTTGGGGAAGTATGCATTCGGCGGAGCAACTCGAGAAAT
TTTGAGCTCAGGCTCTAGTTGTAGGAATTCATCGAAACCGGGCATCTATC
AGGGATTCATacggagaaagggaaggaggaggagcgacggGGCATATGCC
TCCTGGAGGTTCTGTCTCAGGTTCTGTGAGGTTCTGTCTCAAATCGGGAT
GGCCTCTGCTTCAGGTTCAGTACGCGGTCTTGTCATCTTGAAATGTTTCC
CAGCAGGGGGCTGGGGCATACCATGTTGCATATTTTATCTTTGA

Synonyms

Publications