|
|
Properties
| Property Name | Value |
|---|
| Product | Cellulose synthase |
| Orig transcript id | gnl|cribi|Naga_100049g27.2104.mrna |
| Orig protein id | gnl|cribi|Naga_100049g27.2104 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:466645..468678 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5640 ID=rna5640|Name=rna5640|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
TTAATAGTGCTTTTCCACACATTCTGTGTCTCAGTTGTTTGCCCTTGCCT
GTCTAGAGTGGTCTCTTTTATGGTTGCACATCAGTCGCGCATTCGTGGCC
TTTTTCCACGAACGAGGCGTTCCCTGCCATGATCGCGCGACGCAATCAAG
TGCTTGGTAGTCTGCAACCTCTTCACGTCCATCTTCGGAGCGCATATTGA
TACCCCCGATCCCCCCCCCCTTGCCACGACAGTATGAATGGTATGACTCA
TTCACTCATATTTTTTCCACACTTGTTCCCTCTGCAGGACGAAAACCTGC
CCATGCGTGGTGAGCGTCGTACTCCTGTTTTTTTTTTCAAAGTCAACGCT
GCCGCAACACTTCTTATTATTGTCTGCTGCATGCTCCGACCCACTCACAG
CTACACCCGCCGAGCACTTGCGTTCCTTGCGCTGCCAAACCGCTCCCATT
TTTGTACCGCAAGCCTCTCGCGCTCCTTCACGTCGAGATCAATGTCATCG
GTGGCAGACTTACGTAAGGAATACTCGGCCTCGGGCTTGGTGGAGGAAAA
CATGCCCTCAGAGCCTCTGTCGGTTTTTCGTCAATGGCTCGACGAGGCGG
TAGCTGCCCAAGTTCTTGAGCCTAATGCTATGTGTCTGTCCACCGTGAGC
TCGGACGGAAAGCCGTCCGGTCGCTTTGTTTTGCTCAAAGGTTTGGATGA
TCGAGGGTTTACCTGGTTCACAAACTATCAGTCCCGCAAAGGCCATGACT
TGGCCGGGGCCCCGGTGGCACCTGCTGTGACAAGTAGTGCCGCCATCCCT
CCCTCGTCCTCTGGCTCAAGCGCACCGCCCTTTGCGGCGCTTACGTTCTG
GTGGGGAGATCTGGAGCGCTCTGTGAGGGTCGAGGGGTGGGTGGAGCGTT
TGTCAGAGGAAGCAAGCCAGGCATACTTCGACAGCCGCCCGCGGGGGAGC
CGGATTGGGGCATGGGCCTCGGAGCAAAGTCGGCCAATTGGCTCGAGGTC
TGACTTGGAGTCTCAGTACGCCTCCGTGTCTGCGCGCTTTGGAGGAGAGG
AGGGGAACGATAGTGCACACCCCATACCCAAGCCCGCACAGTGGGGAGGC
TTTCGGTTGGTGCCAGAGAGGGTGGAGTTTTGGAAAGGGCGGCAGTCACG
ACTGCACGATAGGCTCATGTACACGCTCGAGGAGGACAAGGCGGGCAGGA
TATGGAAGCTGACGCGCTTGCAGCCGTAACGTGAAGGATATAAGGCTGGA
GAGGAGTCAACAAGATAGCAACTGTAATGCAAACAAGGAATGTAACGACT
CAAATCAATTAAACGATCCATGCGATCTATTT back to topprotein sequence of rna5640 >rna5640-protein ID=rna5640-protein|Name=rna5640|organism=Nannochloropsis gaditana|type=polypeptide|length=677bp
MDNAHDSNSYSSTTSRSDVAAAGTPAGAIPFPAGGFSAPAGSAISSGATS
PDASVSPMTSTSPVSSTTSASKRLIIPPSPAMAVEMGVLEDHNHSDTSSA
TGSISQPELDVNFNAAVYHTLKQKIFERTFVVAAQLAQLAYLTWRWYYFI
VTPSTLYVSLPFIVAETMIVLGGSFITYFLVWNQCKRPKLRLVDLKVERQ
ELPTVDVMIPCYNEPVEIVRETTLAALAMDYPKEKLSIVVCDDGNSAAMR
ALIAQLRADMGGSKATLRYIARKKIPGVPHHAKAGNINNALMNEGTSGDF
IVIFDCDMICRPEFLQCVLPHFYKLEEDALVIDEEVAMVQTPQSFVNVPE
DDPLGQQYRYFYGPVLHGWDSVGTTPCCGTNVTFSRKALMSVGGFTYGSI
TEDFLTSMTLHSHGFRTKYIHEYLAKGLSPESVHDFMKQRFRWAAGGLEI
FVRNNALFKRGLRPVQKFLYFWAGFNTCLAIPMIYLIYRPIIYLLGQSSV
QIATFDTVQYFIFFLPYMFLQVCCMNISYRDVPKIYLRRSLQESVFMLFC
YARAVITVVVGFKLGFKVTSKDAEASEFRKSFNWCIPYLIYYFLGSMSVG
FGVLNMYRAYQAPDHDPMSMMALCVSLFWICFIMWQMWPPIGYLLRCLDP
QPAVEKVVADDAAPSSRQSAIVPVMAQ back to topmRNA from alignment at CM002466.1:466645..468678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5640 ID=rna5640|Name=rna5640|organism=Nannochloropsis gaditana|type=mRNA|length=2034bp|location=Sequence derived from alignment at CM002466.1:466645..468678+ (Nannochloropsis gaditana)
ATGGACAACGCACACGACAGCAACAGCTATAGCAGCACTACCTCTAGGAG
TGATGTCGCTGCCGCAGGCACCCCAGCCGGAGCCATTCCTTTCCCGGCAG
GAGGCTTTTCTGCGCCTGCAGGGAGCGCAATTTCCTCCGGAGCTACCTCT
CCTGACGCATCCGTGTCCCCAATGACCTCAACTTCCCCGGTTTCCTCGAC
CACTTCGGCATCTAAACGGCTTATtatccccccctctccggcCATGGCAG
TAGAAATGGGCGTCCTCGAGGATCATAACCACAGTGACACCTCGTCCGCC
ACTGGCTCCATTTCTCAGCCCGAGCTTGATGTAAATTTCAATGCAGCGGT
GTATCACACTCTCAAACAAAAGATTTTCGAGCGCACATTTGTTGTGGCTG
CCCAACTCGCACAGCTTGCCTATTTGACGTGGCGTTGGTACTACTTCAtc
gtcacgccctccacacTCTACGTCTCGCTTCCTTTCATCGTCGCCGAGAC
CATGATCGTCCTTGGGGGCTCCTTCATCACCTATTTCCTGGTATGGAACC
AGTGCAAGCGGCCCAAGCTCCGTCTCGTCGATTTGAAGGTGGAGCGTCAG
GAACTTCCCACTGTGGATGTGATGATTCCGTGCTACAACGAGCCAGTCGA
GATCGTGCGTGAGACGACCCTGGCCGCGCTGGCCATGGACTACCCGAAGG
AGAAACTTTCCATTGTTGTATGCGATGACGGCAACTCAGCCGCCATGCGC
GCTTTGATCGCACAGCTCCGCGCGGACATGGGGGGATCCAAAGCCACCCT
CCGCTACATTGCTCGAAAGAAGATCCCTGGGGTGCCTCATCACGCCAAGG
CGGGCAACATTAACAACGCGCTTATGAACGAGGGCACGAGTGGTGATTTC
ATCGTCATTTTTGACTGCGACATGATATGCCGACCTGAATTCTTGCAGTG
TGTTCTACCCCATTTTTacaagctggaggaggatgcgctGGTGAtcgacg
aggaagtggcCATGGTGCAGACGCCTCAGTCCTTTGTAAACGTGCCCGAG
GACGACCCCTTGGGTCAACAATACCGCTACTTTTACGGCCCTGTGCTCCA
TGGCTGGGACTCGGTGGGCACCACGCCGTGCTGTGGGACCAACGTAACCT
TCTCCCGCAAGGCCCTCATGAGCGTGGGTGGCTTCACGTACGGCTCTATC
ACGGAGGATTTCCTGACTTCGATGACCCTGCACTCGCACGGGTTTAGGAC
CAAGTACATCCACGAATACCTTGCTAAGGGCTTGAGCCCCGAGAGCGTGC
ACGACTTTATGAAGCAGCGCTTTCGGTGGGCGGCAGGCGGATTGGAGATT
TTCGTCCGGAACAACGCCCTCTTCAAGCGAGGACTGCGCCCGGTGCAAAA
GTTCTTGTACTTCTGGGCGGGATTCAACACTTGTTTAGCCATTCCCATGA
TCTATTTGATCTACCGCCCCATCATCTACCTGCTCGGGCAGTCGTCCGTC
CAGATCGCCACCTTCGACACGGTCCAGTActtcatctttttcctcccgta
CATGTTCCTCCAGGTTTGCTGCATGAATATCAGCTACCGCGACGTGCCTA
AGATCTACCTCCGCCGCTCTCTTCAGGAGTCCGTCTTCATGCTCTTCTGC
TACGCCCGGGCCGTGAtcacggtggtggtgggtTTCAAACTCGGGTTCAA
GGTGACGAGCAAAGACGCCGAGGCGTCCGAATTCCGCAAGAGCTTCAACT
GGTGCATTCCTTACCTGATTTACTACTTCCTGGGCTCCATGTCGGTGGGG
TTTGGCGTGCTCAACATGTACCGGGCGTACCAGGCACCGGACCACGACCC
CATGTCGATGATGGCGCTCTGTGTCTCGCTTTTCTGGATCTGTTTCATCA
TGTGGCAGATGTGGCCGCCTATTGGCTATCTCCTCCGCTGCTTGGACCCG
CAGCCCgctgtggagaaggtggtTGCGGATGAtgctgccccttcctcgcg
ccAGTCGGCTATCGTCCCGGTGATGGCGCAATAG back to topCoding sequence (CDS) from alignment at CM002466.1:466645..468678+ >rna5640 ID=rna5640|Name=rna5640|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002466.1:466645..468678+ (Nannochloropsis gaditana)
ATGGACAACGCACACGACAGCAACAGCTATAGCAGCACTACCTCTAGGAG
TGATGTCGCTGCCGCAGGCACCCCAGCCGGAGCCATTCCTTTCCCGGCAG
GAGGCTTTTCTGCGCCTGCAGGGAGCGCAATTTCCTCCGGAGCTACCTCT
CCTGACGCATCCGTGTCCCCAATGACCTCAACTTCCCCGGTTTCCTCGAC
CACTTCGGCATCTAAACGGCTTATtatccccccctctccggcCATGGCAG
TAGAAATGGGCGTCCTCGAGGATCATAACCACAGTGACACCTCGTCCGCC
ACTGGCTCCATTTCTCAGCCCGAGCTTGATGTAAATTTCAATGCAGCGGT
GTATCACACTCTCAAACAAAAGATTTTCGAGCGCACATTTGTTGTGGCTG
CCCAACTCGCACAGCTTGCCTATTTGACGTGGCGTTGGTACTACTTCAtc
gtcacgccctccacacTCTACGTCTCGCTTCCTTTCATCGTCGCCGAGAC
CATGATCGTCCTTGGGGGCTCCTTCATCACCTATTTCCTGGTATGGAACC
AGTGCAAGCGGCCCAAGCTCCGTCTCGTCGATTTGAAGGTGGAGCGTCAG
GAACTTCCCACTGTGGATGTGATGATTCCGTGCTACAACGAGCCAGTCGA
GATCGTGCGTGAGACGACCCTGGCCGCGCTGGCCATGGACTACCCGAAGG
AGAAACTTTCCATTGTTGTATGCGATGACGGCAACTCAGCCGCCATGCGC
GCTTTGATCGCACAGCTCCGCGCGGACATGGGGGGATCCAAAGCCACCCT
CCGCTACATTGCTCGAAAGAAGATCCCTGGGGTGCCTCATCACGCCAAGG
CGGGCAACATTAACAACGCGCTTATGAACGAGGGCACGAGTGGTGATTTC
ATCGTCATTTTTGACTGCGACATGATATGCCGACCTGAATTCTTGCAGTG
TGTTCTACCCCATTTTTacaagctggaggaggatgcgctGGTGAtcgacg
aggaagtggcCATGGTGCAGACGCCTCAGTCCTTTGTAAACGTGCCCGAG
GACGACCCCTTGGGTCAACAATACCGCTACTTTTACGGCCCTGTGCTCCA
TGGCTGGGACTCGGTGGGCACCACGCCGTGCTGTGGGACCAACGTAACCT
TCTCCCGCAAGGCCCTCATGAGCGTGGGTGGCTTCACGTACGGCTCTATC
ACGGAGGATTTCCTGACTTCGATGACCCTGCACTCGCACGGGTTTAGGAC
CAAGTACATCCACGAATACCTTGCTAAGGGCTTGAGCCCCGAGAGCGTGC
ACGACTTTATGAAGCAGCGCTTTCGGTGGGCGGCAGGCGGATTGGAGATT
TTCGTCCGGAACAACGCCCTCTTCAAGCGAGGACTGCGCCCGGTGCAAAA
GTTCTTGTACTTCTGGGCGGGATTCAACACTTGTTTAGCCATTCCCATGA
TCTATTTGATCTACCGCCCCATCATCTACCTGCTCGGGCAGTCGTCCGTC
CAGATCGCCACCTTCGACACGGTCCAGTActtcatctttttcctcccgta
CATGTTCCTCCAGGTTTGCTGCATGAATATCAGCTACCGCGACGTGCCTA
AGATCTACCTCCGCCGCTCTCTTCAGGAGTCCGTCTTCATGCTCTTCTGC
TACGCCCGGGCCGTGAtcacggtggtggtgggtTTCAAACTCGGGTTCAA
GGTGACGAGCAAAGACGCCGAGGCGTCCGAATTCCGCAAGAGCTTCAACT
GGTGCATTCCTTACCTGATTTACTACTTCCTGGGCTCCATGTCGGTGGGG
TTTGGCGTGCTCAACATGTACCGGGCGTACCAGGCACCGGACCACGACCC
CATGTCGATGATGGCGCTCTGTGTCTCGCTTTTCTGGATCTGTTTCATCA
TGTGGCAGATGTGGCCGCCTATTGGCTATCTCCTCCGCTGCTTGGACCCG
CAGCCCgctgtggagaaggtggtTGCGGATGAtgctgccccttcctcgcg
ccAGTCGGCTATCGTCCCGGTGATGGCGCAATAG back to top
|