rna5639, rna5639 (mRNA) Nannochloropsis gaditana

Overview
Namerna5639
Unique Namerna5639
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3052
Alignment locationCM002466.1:464387..465718 -

Link to JBrowse

Properties
Property NameValue
Productpyridoxamine 5 -phosphate oxidase
Orig transcript idgnl|cribi|Naga_100049g28.2093.mrna
Orig protein idgnl|cribi|Naga_100049g28.2093
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:464387..465718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100049g28gene5449Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25034.1cds5624Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5639rna5639-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5639 ID=rna5639|Name=rna5639|organism=Nannochloropsis gaditana|type=mRNA|length=3052bp
GACTGCCACGGTGCCAATGGACTCATGCATAAAGGCCTGAACCAATGCGC
GCGTACGAGTTTTTAACTTTTTCCAAGTTTCACCACACACGTGCCCATGT
GGCGCGCCTAGCCACGGCGCCAAGCCTCACGCGTCGCTGTCGTATCAGGG
CAGCCGGATGGGGATTCAATCGCTGCGAGCTCTGTCGCTCTTGACGCCAC
GTGAAAAACGACCCCCGGTGTACCACAGGTACAATAGCGTGTTGCTGCTT
GTAGGTCCCAGGCAACTTCTCCACGTATGTATGGTTCAAGAGCGGAACAC
TCGCTCGCAACGTGCCGCAGCGCCGCAGTGGACAGGCCTATCTTTTTCTT
TTCCCGATCCTGTGCAGTTCTCTTTCCCCTCTTCCCACAACAAATTTCAG
ATGACTACAACCTCAACATATCGAACATCGTCCCGCCCTCGTTTCCTCAA
AAAGATGCCAGTCTTGACGTGCATTGCCAAATAATGTCATGAAGACAGGA
AGACAAAAGACATTATTTGTCTTGTGAAAACTTGCACAAGTCCTGCTTTT
TTGAAATTAAAACAAATGTCCTGGGATTGTCGAACTAGACCGATACACGA
TTGGGCTTCTCTTCCGGATAATAAAAGACGACGCAGCAACTTGACACGTA
AAATGACATTCATTCTGGTTGAGTCCAACATGAAAAAAATCAAAATGATG
CATGACAGCCGAAAAGCCGCACTATTCTGGCAGTAATTCCTTGTGATTGC
TTCTTCATAATGTGCTTGAGTATAAGGCTGCCATGAACGCGCAGAAAGAT
TTCCAATGGCGCAAACCTGCCATTTCCGGTATGTACCACTTGTGACCCTG
CTTTTGCTCATTTGGGCTCACCATTGGTACTTATCAACTGCCTGAATTTA
CTTTTAAAATGCTTTTTAGTATCTTCAAATATTAGATGGAATGTTTACGA
GGAAGCATTCTTGCTTGCTGCCTCTATTTCTGCGCCACTTTGCTCTGAAG
TAAACGTTAGTTCTCTCTGTATAGGACCCCCAAAAAAAAAGAGCTTCCGC
CTTTTCTTTAAAAAAAATGATAAGGCCTCTTAACTCGATTGTCAAAAGTA
TACCAATCTTGTTTAAAAAAAAAAAGATTCGGCTTCATCCTCGAGGAAGA
CGCGTCCCCTGAGCGCTGGCTGTCAGTCCTGTGTCTGTCACGTAACGGCC
CCTCTGCTTCGAGCCTGTCCTCACGCCTTCAACAGAAATGCACATCATTC
TTCAACAATCCACTTCGATACCAACCGTCTTGAACACGCTTGAGCCGTAC
AATACCTCCATGATAGCGAGATTTACAGCTGTGGGCATTTCACGAGAAAA
AAAGTGAGAGGCTCGGCCTGTCATGCGGCATGACAGCACTTCATGTGCGA
TAGAACAGGCACCCTTGATTGATGGTCTCAAGCACACATTAAAAAAATGT
ATGGCATTCGGAGTCCATTTATTTGATCCAATACTTTGTGATTGGCCATA
TGCGGCTCTCCTTTGCTTCAGGGTACCAGTCGGCCACTGGAAACTGGCTC
ATTGCTCCCCAGTCCCGGACTTACCGTTTGATCTGACTGACACGTATTTC
TTCTTTCTAGAGGCACAGGAAGGTGGCACTCGCCTCCGACCCCTTCGCAC
TCGTCGCCGCGTGAAGAAATGGACGTAAGCAATCCATTGAATGGATGTCT
GGAGCAGCACAGGACCGAAGTGCCGTGGGAAGAGCCTCAGCAAGCAGCTT
ACGTAATTTCGGAGACGCATGGCGGGCGCCTCTTTACCCGAACATGGATC
CCAAAGGATTGTGTCACGCCCGCAAGTTGCATTTTTCTAGCGCATGGTGT
GAACGAGCATATTGGACGGTACTGTGACCTCGCGCATTCCCTAACGGCGA
AGGGGCATAAGGTGTTTGGCCATGATCATTGGGGCCATGGGCTGAGCGGG
GGGCATAGGGGGGACGTGGAGGACTTAAATTACTTGATCGGTGATTTAAA
GCAATTAATAGCAGCCCAGCGCGATAATCACCGGGGCGTGCCTTTCTTTA
TCATAGGCCACTCCATGGGAACCATCGTCGCCTTCCACGCCGCCTTGGAG
CTCTCCTCCGAGGCACCCTCCCTCCTGCACGGCGTCATCTTTTCCGGCTG
CGCCCTTGTCCCCGGCCCCGCGGCCGCCTCCCCTTTCGGCGTCCGCTTTC
TCTTCTGCCTGACCAAAAGTGAATGGGCCTCGTCGGCCATCGGAGGCCTG
ATGGCACGCCTCGACCCGCGTGGCCCCTTGGCTCCCGTGGTCGAGTCCGA
GCTCACACGGGACACAAAGGAGCTGAAGGCCCTGCAGCGCGACCCTTTGC
ACAATCGGGGGCCCTTGCTAAATCGGACGGGGAACCAACTTCTTCACAAA
TGTCGCGAGATGAAAGAACGCCTGCCCCATTTCACCTTGCCTTTCCTGGC
CATGCACGGAGCAGCGGACACGATCACATACCCGGAGGGCTCTCGCTTCC
TCTTCGAGCATGCAGGCTCCACAGTGAAGACCCTGAAGATTTTCCCCGCC
TTGTACCATGAGATCTTCCTCGAAACCGCCGCAGACCGGGAGGCGGTGTT
GAGGGATGTGCACGCGTTTTTGGAGGACGCGGTGTGGAACAAAGGTGACA
CGCTTGTGGAGGAGGAACAGGATACGAGGGGGGCCACGGGGGCGGGGGAG
GGAGGGAGGGAAAGAGGAGACAAGGATATGAAAGCCTTTGCGGGCTTAAG
ACAAGCGCCGATGTGAAGGAAAAAGCTGCCTTTGCGGGACTCGTGAGGGG
TAATTACAACTGCTGATCAGCCAGGGTGGGACGAACATTGCACTAAGGAC
CAGGGCCGCTCGGTCAAAGCGAGGGGAAGGACGGCAACGAGGGCGTGGGC
AGGGGGAAAGCGTGATCGCATCGAACACTTGGCAAGCGAGCGGCGCCCGC
CTCTGGCGCCTAGGTAAACAGAAGTGTGCGTGTGACTAGGTGAATAGAAG
TGTGTCTATACGTACAGGATGTCAAAAATAGATCGCATGGATCGTTTAAT
TG
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protein sequence of rna5639

>rna5639-protein ID=rna5639-protein|Name=rna5639|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MNGMTHSLIFFPHLFPLQDENLPMRGERRTPVFFFKVNAAATLLIIVCCM
LRPTHSYTRRALAFLALPNRSHFCTASLSRSFTSRSMSSVADLRKEYSAS
GLVEENMPSEPLSVFRQWLDEAVAAQVLEPNAMCLSTVSSDGKPSGRFVL
LKGLDDRGFTWFTNYQSRKGHDLAGAPVAPAVTSSAAIPPSSSGSSAPPF
AALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSR
PIGSRSDLESQYASVSARFGGEEGNDSAHPIPKPAQWGGFRLVPERVEFW
KGRQSRLHDRLMYTLEEDKAGRIWKLTRLQP
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mRNA from alignment at CM002466.1:464387..465718-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5639 ID=rna5639|Name=rna5639|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp|location=Sequence derived from alignment at CM002466.1:464387..465718- (Nannochloropsis gaditana)
TTAATAGTGCTTTTCCACACATTCTGTGTCTCAGTTGTTTGCCCTTGCCT
GTCTAGAGTGGTCTCTTTTATGGTTGCACATCAGTCGCGCATTCGTGGCC
TTTTTCCACGAACGAGGCGTTCCCTGCCATGATCGCGCGACGCAATCAAG
TGCTTGGTAGTCTGCAACCTCTTCACGTCCATCTTCGGAGCGCATATTGA
TACCCCCGATCCCCCCCCCCTTGCCACGACAGTATGAATGGTATGACTCA
TTCACTCATATTTTTTCCACACTTGTTCCCTCTGCAGGACGAAAACCTGC
CCATGCGTGGTGAGCGTCGTACTCCTGTTTTTTTTTTCAAAGTCAACGCT
GCCGCAACACTTCTTATTATTGTCTGCTGCATGCTCCGACCCACTCACAG
CTACACCCGCCGAGCACTTGCGTTCCTTGCGCTGCCAAACCGCTCCCATT
TTTGTACCGCAAGCCTCTCGCGCTCCTTCACGTCGAGATCAATGTCATCG
GTGGCAGACTTACGTAAGGAATACTCGGCCTCGGGCTTGGTGGAGGAAAA
CATGCCCTCAGAGCCTCTGTCGGTTTTTCGTCAATGGCTCGACGAGGCGG
TAGCTGCCCAAGTTCTTGAGCCTAATGCTATGTGTCTGTCCACCGTGAGC
TCGGACGGAAAGCCGTCCGGTCGCTTTGTTTTGCTCAAAGGTTTGGATGA
TCGAGGGTTTACCTGGTTCACAAACTATCAGTCCCGCAAAGGCCATGACT
TGGCCGGGGCCCCGGTGGCACCTGCTGTGACAAGTAGTGCCGCCATCCCT
CCCTCGTCCTCTGGCTCAAGCGCACCGCCCTTTGCGGCGCTTACGTTCTG
GTGGGGAGATCTGGAGCGCTCTGTGAGGGTCGAGGGGTGGGTGGAGCGTT
TGTCAGAGGAAGCAAGCCAGGCATACTTCGACAGCCGCCCGCGGGGGAGC
CGGATTGGGGCATGGGCCTCGGAGCAAAGTCGGCCAATTGGCTCGAGGTC
TGACTTGGAGTCTCAGTACGCCTCCGTGTCTGCGCGCTTTGGAGGAGAGG
AGGGGAACGATAGTGCACACCCCATACCCAAGCCCGCACAGTGGGGAGGC
TTTCGGTTGGTGCCAGAGAGGGTGGAGTTTTGGAAAGGGCGGCAGTCACG
ACTGCACGATAGGCTCATGTACACGCTCGAGGAGGACAAGGCGGGCAGGA
TATGGAAGCTGACGCGCTTGCAGCCGTAACGTGAAGGATATAAGGCTGGA
GAGGAGTCAACAAGATAGCAACTGTAATGCAAACAAGGAATGTAACGACT
CAAATCAATTAAACGATCCATGCGATCTATTT
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Coding sequence (CDS) from alignment at CM002466.1:464387..465718-

>rna5639 ID=rna5639|Name=rna5639|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at CM002466.1:464387..465718- (Nannochloropsis gaditana)
ATGAATGGTATGACTCATTCACTCATATTTTTTCCACACTTGTTCCCTCT
GCAGGACGAAAACCTGCCCATGCGTGGTGAGCGTCGTACTCCTGTTTTTT
TTTTCAAAGTCAACGCTGCCGCAACACTTCTTATTATTGTCTGCTGCATG
CTCCGACCCACTCACAGCTACACCCGCCGAGCACTTGCGTTCCTTGCGCT
GCCAAACCGCTCCCATTTTTGTACCGCAAGCCTCTCGCGCTCCTTCACGT
CGAGATCAATGTCATCGGTGGCAGACTTACGTAAGGAATACTCGGCCTCG
GGCTTGGTGGAGGAAAACATGCCCTCAGAGCCTCTGTCGGTTTTTCGTCA
ATGGCTCGACGAGGCGGTAGCTGCCCAAGTTCTTGAGCCTAATGCTATGT
GTCTGTCCACCGTGAGCTCGGACGGAAAGCCGTCCGGTCGCTTTGTTTTG
CTCAAAGGTTTGGATGATCGAGGGTTTACCTGGTTCACAAACTATCAGTC
CCGCAAAGGCCATGACTTGGCCGGGGCCCCGGTGGCACCTGCTGTGACAA
GTAGTGCCGCCATCCCTCCCTCGTCCTCTGGCTCAAGCGCACCGCCCTTT
GCGGCGCTTACGTTCTGGTGGGGAGATCTGGAGCGCTCTGTGAGGGTCGA
GGGGTGGGTGGAGCGTTTGTCAGAGGAAGCAAGCCAGGCATACTTCGACA
GCCGCCCGCGGGGGAGCCGGATTGGGGCATGGGCCTCGGAGCAAAGTCGG
CCAATTGGCTCGAGGTCTGACTTGGAGTCTCAGTACGCCTCCGTGTCTGC
GCGCTTTGGAGGAGAGGAGGGGAACGATAGTGCACACCCCATACCCAAGC
CCGCACAGTGGGGAGGCTTTCGGTTGGTGCCAGAGAGGGTGGAGTTTTGG
AAAGGGCGGCAGTCACGACTGCACGATAGGCTCATGTACACGCTCGAGGA
GGACAAGGCGGGCAGGATATGGAAGCTGACGCGCTTGCAGCCGTAA
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Synonyms
Publications