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Properties
| Property Name | Value |
|---|
| Product | alcohol dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100049g35.2109.mrna |
| Orig protein id | gnl|cribi|Naga_100049g35.2109 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:451753..454796 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5633 ID=rna5633|Name=rna5633|organism=Nannochloropsis gaditana|type=mRNA|length=2297bp
CCTGACTGTAGATGATGAAGTTCCGTATCGGGCGGTCACTGGTTCAAATC
CGGTGGGTCGGAAGCCAACTTTTTTGGGTCTAAGACCCTGACTGGCGGCG
CTATGCGTGAGGGATGCTGAGGTTCAGGACCTTGCACGGCGGTTTGGGGG
AGGGATTGTAGTGTGCCCGTTCTACATTTTTAATCTTCACAACGTAATTT
ATGATGTCCTGTGCGCAAGCTTCCCGTGCGCCTCGCTCGTTCGTCATCCC
TCTCAACACTCCGGAAAGAAAGATACCTTTCTCCCCCAGTACGAAGGCTG
GACCCGTTCTAGCGCTCACAGCCAAAGCGGGAGAGGACGAATGTATGTAT
ACCGGGCAAAATCTGCCGCATTTTTATAGGTACTTTGCAGCGCTTTTTTG
ACTTCGAGAAAGAACTGAAAATGACGGATCCCAGCGCCTCAACTACCGCC
GCAGCGCAACTTCCTGGTCGCATGTTGGCAGGAGTTGCAGATCATCATGG
TGACCGCTTTGACATGCGTGAAATTCCTGTCACGCCGCCAGGAGTAGGCC
AGGCGCTGGTCAAGGTGGTGACAAGCGGTGTATGCCATACGGATGTGCAT
GCTGTTGACGGAGACTGGCCGGCCCCTACTAAGCTTCCCTTGGTTCCTGG
TCATGAAGGGGCGGGTGTGGTGGTAGCCGTGGGGCCCGGCGTCAGCAGCA
CCGTCGTCAGCCTCGGGGACCGCGTTGGTATCCCCTGGCTCCACTCAAGC
TGTGGCTCCTGCGAGTTTTGCCTGTCTGGTCGTGAGAACCTCTGCCCCTT
GCAGGATAACACGGGGTATTCCGTGGATGGCTGCTTCGCCCAGTACGTTC
TGGCACCAGCTGCGCATTTGGCGAAGATCCCGGACGAAGTCAGCTTTGAG
CAGGCTGCCCCTATCCTTTGCGCGGGCGTCACGACCTACTCGGCAATCAA
AGCAACAGAGGCTCGGCCTGGTCAGTTCCTCACCGTGATTGGTGCTGCAG
GCGGTCTAGGCCATCTGGCTGTGCAGTTCGGTGTAGCCCTGGGACTGCGC
GTCATGGCGCTAGACCGGGGCGCCGATAAGTTGAAGTTTTGCACAGACAC
ACTGGGAGCCGAAGCCGCGTTTGAGGCGATGGACCCGGGAGTGGTGGACC
AGGTCATTGCAACCACGAAGGGTGGGTCCCACGGTGTGTTGTGCCTCGCT
CCCTCCATCGGAGCCTTTAAATCGGCGGTGAGTCTCTGCCGCCGCGGAGG
AACCATTGTAATGGTTGGGCTGCCAAAGGGGGACCTGCCCCTTAATATTT
TCGATATTGTCATTCGTGGTATCACCGTGCGAGGGAGCATTGTTGGAACG
CGAAAGGACTTAGACGAGGCGTTGGACTTTGCGGCCCGGGGCAAAGTGAA
GTGTCATACGGAGATGCATGGATTCGGCGAATTAAATCAAGTCTTTGACC
AACTCCGCTCTGGAAAGGTCATGGGTAGGCTTGTGTTGAGCGTGGATGGC
ATGTGAAGAATTCGTTTCGTGCAGGATATCAACAACGATATGAGTTAAAA
TTTTAGAAAAACGGGTCGACTTTAGCTGATACACGGGTGCAGGCTTGGTG
AAGGAGAAGACATGGAAGGATCACGAGAGAGAGAGACGAAGTGTTTGTCT
CAGGATTTCTTGGATATCAAGGTCACGTAAAGCTTCAATAAGTGGATGGC
TGCCTCATATGAGGTCGTCAGAGTTCGGATTGATTAGGCTTTTACGAGAG
TAACTAGTTGGTCAAGTTCTTCCATGCGTAGGGATGGTGTAGGACAGTAA
ATAATATGTGTGATCCCGTTTTCCGCGGGTTGAAGGTGGAATCAGAAGCC
ACGTTCGGAGTATTCGGAAGTCATTCCAAGAATTTTTGCTTCTACACTTG
CATCTTGGGAAAAAAACGAAAAAATGGAATGGAAGATTTGTAAGATGCTG
TCCAGGTGTAGACTTCTAGATGCGAGCAACCCCCCCGTAAGAAATAAATA
TTTTTCTGCTAATATTCATACATACACCCATTAAAAGCTCACCTCAGTCC
AGCCGTATCCATTGCGATGGCAGTCTTCCGGCCCAAGGATTTCAAGCCGC
TCAATTGCGTCGACTAAATCTTAAGTCTGACTTCGGGAGCAATCCTTGCT
GCTCTCTTAGTTTCTGGGATTTCAACCATTTCCTGATCGCCAGAGAAGAA
AAATAATCCCGTCGCGGTGCACTTTCATCGATCGGCCAAGAGATGATCTA
TGGGGAAATCTTCCCCAACCCTGCTATGTTTCCCAGGACGAGCAAAG back to topprotein sequence of rna5633 >rna5633-protein ID=rna5633-protein|Name=rna5633|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MTDPSASTTAAAQLPGRMLAGVADHHGDRFDMREIPVTPPGVGQALVKVV
TSGVCHTDVHAVDGDWPAPTKLPLVPGHEGAGVVVAVGPGVSSTVVSLGD
RVGIPWLHSSCGSCEFCLSGRENLCPLQDNTGYSVDGCFAQYVLAPAAHL
AKIPDEVSFEQAAPILCAGVTTYSAIKATEARPGQFLTVIGAAGGLGHLA
VQFGVALGLRVMALDRGADKLKFCTDTLGAEAAFEAMDPGVVDQVIATTK
GGSHGVLCLAPSIGAFKSAVSLCRRGGTIVMVGLPKGDLPLNIFDIVIRG
ITVRGSIVGTRKDLDEALDFAARGKVKCHTEMHGFGELNQVFDQLRSGKV
MGRLVLSVDGM back to topmRNA from alignment at CM002466.1:451753..454796- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5633 ID=rna5633|Name=rna5633|organism=Nannochloropsis gaditana|type=mRNA|length=3044bp|location=Sequence derived from alignment at CM002466.1:451753..454796- (Nannochloropsis gaditana)
GTAGATGATGAAGTTCCGTATCGGGCGGTCACTGGTTCAAATCCGGTGGG
TCGGAAGCCAACTTTTTTGGGTCTAAGACCCTGACTGGCGGCGCTATGCG
TGAGGGATGCTGAGGTTCAGGACCTTGCACGGCGGTTTGGGGGAGGGATT
GTAGTGTGCCCGTTCTACATTTTTAATCTTCACAACGTAATTTATGATGT
CCTGTGCGCAAGCTTCCCGTGCGCCTCGCTCGTTCGTCATCCCTCTCAAC
ACTCCGGAAAGAAAGATACCTTTCTCCCCCAGTACGAAGGCTGGACCCGT
TCTAGCGCTCACAGCCAAAGCGGGAGAGGACGAATGTATGTATACCGGGT
AAGGCCTGCACGTGTATTCCTTCTACGCGTCATGTAAATTAAAGAACTTA
GATAATCATTGGATTCATCGCCGAGGATCGCTGCCAGAAAAAAGTCCCGG
GGTACGAATATTCAATGTGGTTCACTTCAGTGTTCCCTCCGCAACCCTTA
CCACATCGCACACCACTAATTTCCTCTAAAATGTCTTCTTATCTCTCCAT
GAAGGCAAAATCTGCCGCATTTTTATAGGTACTTTGCAGCGCTTTTTTGA
CTTCGAGAAAGAACTGAAAATGACGGATCCCAGCGCCTCAACTACCGCCG
CAGCGCAACTTCCTGGTCGCATGTTGGCAGGAGTTGCAGATCATCATGGT
GACCGCTTTGACATGCGTGAAATTCCTGTCACGCCGCCAGGAGTAGGCCA
GGCGCTGGTCAAGGTGGTGACAAGCGGTGTATGCCATGTAAGTTGTGATG
TTCCTGCTCCTTAGTTGATCTGCAGATATGTAAGTGACGTATTTTTTTAG
GAATCATGACATTTCTCTGGCATCCAGTTATGGTCAACGACATCACGAGC
GGACGCACGAATGTGGGACAATGTTGCTTGCTTCCATGTACCGTGCGCGG
CCGGTTCATTTTAGGCATCATGCGACGACACGTGTTTTCGGTCAAGTGAA
TACTCTTGCCGGTCCATTCGGCTACTATAGATTCACGCCTCTACCAATCT
TTGCCTTCACAGACGGATGTGCATGCTGTTGACGGAGACTGGCCGGCCCC
TACTAAGCTTCCCTTGGTTCCTGGTCATGAAGGGGCGGGTGTGGTGGTAG
CCGTGGGGCCCGGCGTCAGCAGCACCGTCGTCAGCCTCGGGGACCGCGTT
GGTATCCCCTGGCTCCACTCAAGCTGTGGCTCCTGCGAGTTTTGCCTGTC
TGGTCGTGAGAACCTCTGCCCCTTGCAGGATAACACGGGGTATTCCGTGG
ATGGCTGCTTCGCCCAGTACGTTCTGGCACCAGCTGCGCATTTGGCGAAG
ATCCCGGACGAAGTCAGCTTTGAGCAGGTGAGGTGGATGAAGGGAAACTA
GCATTGGGCGCGAATCGTCCGATGGTTTTGTTACTCTCCTCCTTTCTTGG
CGTGGTCAGCAACCCTCGAGACGCTTTGTCATTCTCTTATTCCTTCCTTC
TCGATGGCGACCCTCTGTAACCTCACCAGGCTGCCCCTATCCTTTGCGCG
GGCGTCACGACCTACTCGGCAATCAAAGCAACAGAGGCTCGGCCTGGTCA
GTTCCTCACCGTGATTGGTGCTGCAGGCGGTCTAGGCCATCTGGCTGTGC
AGTTCGGTGTAGCCCTGGGACTGCGCGTCATGGCGCTAGACCGGGGCGCC
GATAAGTTGAAGTTTTGCACAGACACACTGGGAGCCGAAGCCGCGTTTGA
GGCGATGGACCCGGGAGTGGTGGACCAGGTAAAGCACGCATGAGCAATGC
AGACGTCATTACAACTTGGCAAACGATATATTTAAGCAAGTGTCGTGAAT
TTTAAGAACACTCTTTCATCTTATTGCCTGCTTTTCAAACACGTCGTAGG
TCATTGCAACCACGAAGGGTGGGTCCCACGGTGTGTTGTGCCTCGCTCCC
TCCATCGGAGCCTTTAAATCGGCGGTGAGTCTCTGCCGCCGCGGAGGAAC
CATTGTAATGGTTGGGCTGCCAAAGGGGGACCTGCCCCTTAATATTTTCG
ATATTGTCATTCGTGGTATCACCGTGCGAGGGAGCATTGTTGGAACGCGA
AAGGACTTAGACGAGGCGTTGGACTTTGCGGCCCGGGGCAAAGTGAAGTG
TCATACGGAGATGCATGGATTCGGCGAATTAAATCAAGTCTTTGACCAAC
TCCGCTCTGGAAAGGTCATGGGTAGGCTTGTGTTGAGCGTGGATGGCATG
TGAAGAATTCGTTTCGTGCAGGATATCAACAACGATATGAGTTAAAATTT
TAGAAAAACGGGTCGACTTTAGCTGATACACGGGTGCAGGCTTGGTGAAG
GAGAAGACATGGAAGGATCACGAGAGAGAGAGACGAAGTGTTTGTCTCAG
GATTTCTTGGATATCAAGGTCACGTAAAGCTTCAATAAGTGGATGGCTGC
CTCATATGAGGTCGTCAGAGTTCGGATTGATTAGGCTTTTACGAGAGTAA
CTAGTTGGTCAAGTTCTTCCATGCGTAGGGATGGTGTAGGACAGTAAATA
ATATGTGTGATCCCGTTTTCCGCGGGTTGAAGGTGGAATCAGAAGCCACG
TTCGGAGTATTCGGAAGTCATTCCAAGAATTTTTGCTTCTACACTTGCAT
CTTGGGAAAAAAACGAAAAAATGGAATGGAAGATTTGTAAGATGCTGTCC
AGGTGTAGACTTCTAGATGCGAGCAACCCCCCCGTAAGAAATAAATATTT
TTCTGCTAATATTCATACATACACCCATTAAAAGCTCACCTCAGTCCAGC
CGTATCCATTGCGATGGCAGTCTTCCGGCCCAAGGATTTCAAGCCGCTCA
ATTGCGTCGACTAAATCTTAAGTCTGACTTCGGGAGCAATCCTTGCTGCT
CTCTTAGTTTCTGGGATTTCAACCATTTCCTGATCGCCAGAGAAGAAAAA
TAATCCCGTCGCGGTGCACTTTCATCGATCGGCCAAGAGATGATCTATGG
GGAAATCTTCCCCAACCCTGCTATGTTTCCCAGGACGAGCAAAG back to topCoding sequence (CDS) from alignment at CM002466.1:451753..454796- >rna5633 ID=rna5633|Name=rna5633|organism=Nannochloropsis gaditana|type=CDS|length=4344bp|location=Sequence derived from alignment at CM002466.1:451753..454796- (Nannochloropsis gaditana)
GTCATTGCAACCACGAAGGGTGGGTCCCACGGTGTGTTGTGCCTCGCTCC
CTCCATCGGAGCCTTTAAATCGGCGGTGAGTCTCTGCCGCCGCGGAGGAA
CCATTGTAATGGTTGGGCTGCCAAAGGGGGACCTGCCCCTTAATATTTTC
GATATTGTCATTCGTGGTATCACCGTGCGAGGGAGCATTGTTGGAACGCG
AAAGGACTTAGACGAGGCGTTGGACTTTGCGGCCCGGGGCAAAGTGAAGT
GTCATACGGAGATGCATGGATTCGGCGAATTAAATCAAGTCTTTGACCAA
CTCCGCTCTGGAAAGGTCATGGGTAGGCTTGTGTTGAGCGTGGATGGCAT
GTGAGCTGCCCCTATCCTTTGCGCGGGCGTCACGACCTACTCGGCAATCA
AAGCAACAGAGGCTCGGCCTGGTCAGTTCCTCACCGTGATTGGTGCTGCA
GGCGGTCTAGGCCATCTGGCTGTGCAGTTCGGTGTAGCCCTGGGACTGCG
CGTCATGGCGCTAGACCGGGGCGCCGATAAGTTGAAGTTTTGCACAGACA
CACTGGGAGCCGAAGCCGCGTTTGAGGCGATGGACCCGGGAGTGGTGGAC
CAGACGGATGTGCATGCTGTTGACGGAGACTGGCCGGCCCCTACTAAGCT
TCCCTTGGTTCCTGGTCATGAAGGGGCGGGTGTGGTGGTAGCCGTGGGGC
CCGGCGTCAGCAGCACCGTCGTCAGCCTCGGGGACCGCGTTGGTATCCCC
TGGCTCCACTCAAGCTGTGGCTCCTGCGAGTTTTGCCTGTCTGGTCGTGA
GAACCTCTGCCCCTTGCAGGATAACACGGGGTATTCCGTGGATGGCTGCT
TCGCCCAGTACGTTCTGGCACCAGCTGCGCATTTGGCGAAGATCCCGGAC
GAAGTCAGCTTTGAGCAGATGACGGATCCCAGCGCCTCAACTACCGCCGC
AGCGCAACTTCCTGGTCGCATGTTGGCAGGAGTTGCAGATCATCATGGTG
ACCGCTTTGACATGCGTGAAATTCCTGTCACGCCGCCAGGAGTAGGCCAG
GCGCTGGTCAAGGTGGTGACAAGCGGTGTATGCCATGTCATTGCAACCAC
GAAGGGTGGGTCCCACGGTGTGTTGTGCCTCGCTCCCTCCATCGGAGCCT
TTAAATCGGCGGTGAGTCTCTGCCGCCGCGGAGGAACCATTGTAATGGTT
GGGCTGCCAAAGGGGGACCTGCCCCTTAATATTTTCGATATTGTCATTCG
TGGTATCACCGTGCGAGGGAGCATTGTTGGAACGCGAAAGGACTTAGACG
AGGCGTTGGACTTTGCGGCCCGGGGCAAAGTGAAGTGTCATACGGAGATG
CATGGATTCGGCGAATTAAATCAAGTCTTTGACCAACTCCGCTCTGGAAA
GGTCATGGGTAGGCTTGTGTTGAGCGTGGATGGCATGTGAGCTGCCCCTA
TCCTTTGCGCGGGCGTCACGACCTACTCGGCAATCAAAGCAACAGAGGCT
CGGCCTGGTCAGTTCCTCACCGTGATTGGTGCTGCAGGCGGTCTAGGCCA
TCTGGCTGTGCAGTTCGGTGTAGCCCTGGGACTGCGCGTCATGGCGCTAG
ACCGGGGCGCCGATAAGTTGAAGTTTTGCACAGACACACTGGGAGCCGAA
GCCGCGTTTGAGGCGATGGACCCGGGAGTGGTGGACCAGACGGATGTGCA
TGCTGTTGACGGAGACTGGCCGGCCCCTACTAAGCTTCCCTTGGTTCCTG
GTCATGAAGGGGCGGGTGTGGTGGTAGCCGTGGGGCCCGGCGTCAGCAGC
ACCGTCGTCAGCCTCGGGGACCGCGTTGGTATCCCCTGGCTCCACTCAAG
CTGTGGCTCCTGCGAGTTTTGCCTGTCTGGTCGTGAGAACCTCTGCCCCT
TGCAGGATAACACGGGGTATTCCGTGGATGGCTGCTTCGCCCAGTACGTT
CTGGCACCAGCTGCGCATTTGGCGAAGATCCCGGACGAAGTCAGCTTTGA
GCAGATGACGGATCCCAGCGCCTCAACTACCGCCGCAGCGCAACTTCCTG
GTCGCATGTTGGCAGGAGTTGCAGATCATCATGGTGACCGCTTTGACATG
CGTGAAATTCCTGTCACGCCGCCAGGAGTAGGCCAGGCGCTGGTCAAGGT
GGTGACAAGCGGTGTATGCCATGTCATTGCAACCACGAAGGGTGGGTCCC
ACGGTGTGTTGTGCCTCGCTCCCTCCATCGGAGCCTTTAAATCGGCGGTG
AGTCTCTGCCGCCGCGGAGGAACCATTGTAATGGTTGGGCTGCCAAAGGG
GGACCTGCCCCTTAATATTTTCGATATTGTCATTCGTGGTATCACCGTGC
GAGGGAGCATTGTTGGAACGCGAAAGGACTTAGACGAGGCGTTGGACTTT
GCGGCCCGGGGCAAAGTGAAGTGTCATACGGAGATGCATGGATTCGGCGA
ATTAAATCAAGTCTTTGACCAACTCCGCTCTGGAAAGGTCATGGGTAGGC
TTGTGTTGAGCGTGGATGGCATGTGAGCTGCCCCTATCCTTTGCGCGGGC
GTCACGACCTACTCGGCAATCAAAGCAACAGAGGCTCGGCCTGGTCAGTT
CCTCACCGTGATTGGTGCTGCAGGCGGTCTAGGCCATCTGGCTGTGCAGT
TCGGTGTAGCCCTGGGACTGCGCGTCATGGCGCTAGACCGGGGCGCCGAT
AAGTTGAAGTTTTGCACAGACACACTGGGAGCCGAAGCCGCGTTTGAGGC
GATGGACCCGGGAGTGGTGGACCAGACGGATGTGCATGCTGTTGACGGAG
ACTGGCCGGCCCCTACTAAGCTTCCCTTGGTTCCTGGTCATGAAGGGGCG
GGTGTGGTGGTAGCCGTGGGGCCCGGCGTCAGCAGCACCGTCGTCAGCCT
CGGGGACCGCGTTGGTATCCCCTGGCTCCACTCAAGCTGTGGCTCCTGCG
AGTTTTGCCTGTCTGGTCGTGAGAACCTCTGCCCCTTGCAGGATAACACG
GGGTATTCCGTGGATGGCTGCTTCGCCCAGTACGTTCTGGCACCAGCTGC
GCATTTGGCGAAGATCCCGGACGAAGTCAGCTTTGAGCAGATGACGGATC
CCAGCGCCTCAACTACCGCCGCAGCGCAACTTCCTGGTCGCATGTTGGCA
GGAGTTGCAGATCATCATGGTGACCGCTTTGACATGCGTGAAATTCCTGT
CACGCCGCCAGGAGTAGGCCAGGCGCTGGTCAAGGTGGTGACAAGCGGTG
TATGCCATGTCATTGCAACCACGAAGGGTGGGTCCCACGGTGTGTTGTGC
CTCGCTCCCTCCATCGGAGCCTTTAAATCGGCGGTGAGTCTCTGCCGCCG
CGGAGGAACCATTGTAATGGTTGGGCTGCCAAAGGGGGACCTGCCCCTTA
ATATTTTCGATATTGTCATTCGTGGTATCACCGTGCGAGGGAGCATTGTT
GGAACGCGAAAGGACTTAGACGAGGCGTTGGACTTTGCGGCCCGGGGCAA
AGTGAAGTGTCATACGGAGATGCATGGATTCGGCGAATTAAATCAAGTCT
TTGACCAACTCCGCTCTGGAAAGGTCATGGGTAGGCTTGTGTTGAGCGTG
GATGGCATGTGAGCTGCCCCTATCCTTTGCGCGGGCGTCACGACCTACTC
GGCAATCAAAGCAACAGAGGCTCGGCCTGGTCAGTTCCTCACCGTGATTG
GTGCTGCAGGCGGTCTAGGCCATCTGGCTGTGCAGTTCGGTGTAGCCCTG
GGACTGCGCGTCATGGCGCTAGACCGGGGCGCCGATAAGTTGAAGTTTTG
CACAGACACACTGGGAGCCGAAGCCGCGTTTGAGGCGATGGACCCGGGAG
TGGTGGACCAGACGGATGTGCATGCTGTTGACGGAGACTGGCCGGCCCCT
ACTAAGCTTCCCTTGGTTCCTGGTCATGAAGGGGCGGGTGTGGTGGTAGC
CGTGGGGCCCGGCGTCAGCAGCACCGTCGTCAGCCTCGGGGACCGCGTTG
GTATCCCCTGGCTCCACTCAAGCTGTGGCTCCTGCGAGTTTTGCCTGTCT
GGTCGTGAGAACCTCTGCCCCTTGCAGGATAACACGGGGTATTCCGTGGA
TGGCTGCTTCGCCCAGTACGTTCTGGCACCAGCTGCGCATTTGGCGAAGA
TCCCGGACGAAGTCAGCTTTGAGCAGATGACGGATCCCAGCGCCTCAACT
ACCGCCGCAGCGCAACTTCCTGGTCGCATGTTGGCAGGAGTTGCAGATCA
TCATGGTGACCGCTTTGACATGCGTGAAATTCCTGTCACGCCGCCAGGAG
TAGGCCAGGCGCTGGTCAAGGTGGTGACAAGCGGTGTATGCCAT back to top
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