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Properties
| Property Name | Value |
|---|
| Product | cysteine proteinase-like protein |
| Orig transcript id | gnl|cribi|Naga_100049g37.2106.mrna |
| Orig protein id | gnl|cribi|Naga_100049g37.2106 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:446438..447621 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5630 ID=rna5630|Name=rna5630|organism=Nannochloropsis gaditana|type=mRNA|length=1726bp
TGCAGACAGTTAATCCCCCTCCGCGGTGCCTTGTGCTTGTGAAATGGAGG
AAATGCTCTCAGTTTGTCCAGCACGTGCAAAAAATGTTTTTAAGTAGTGG
TTTTTCTGGTATTGGAAATGAAGGGAGAGGGAGGGCTGCTGCCTGAATAG
GAGGGCGATGCCATGCATGCGAGCCCTCCTTTGTACCTAATGTTTTGCTT
TGAGTGACACTGCGAAATCCATTGGCTTTGATTTATGTCTACAGCAACAT
GTACAAGAGAAACATGCTAGGAACCTTGGCCTCTGATTGTTTGTTGCACC
AACCCCTGCCAACCTCCCCCCATCCTTCCTCCGGCAGCCTCATGTTCTCC
TCCGACTTCTTCGGCACGGACTTCACGAAGAACCCGCTGGGAGCCAACAA
GCCTTCCTTATGTCACGAGCATGCAGTCGAACCTACTCCCATAAAGGCGC
ATGCCGAGCGGAGCTATCCTTTCGTTCTCCTCCAGTTCCGCCCAGCTTTT
GCACTTCAACTTTACTTGCGCTTTGTGCGCGCTCCATACGTGGTTCGGAA
CCTGGAATATCCGGTTTTAGAGACTGTGGGACAACTTCCTGTCCTGATGG
ATGGGCAGTTCCTCTTGCCAGAAGAAGACGCCCTGGGGTACCTTCGTGAG
CATTATCCCGCCTTGGACTTGGACGCGAAACTCTCCGGCGCCCGACGTGC
GCAGGTACTGGCATTGCACGCCCTCGTACGAGAGAAGTTAGCTCCTGCCG
TGGGTGCTTCTCGCTACCGGGACGAACGCAATTTTGTCCAAAATGTGCGG
GCGGTCATCTTGCGTGCGACGCGCTTCCCCTTGGGCCCGGCCATCTCCAC
CGCCGAGCGCCGACGCGGTATGCAGGAGCAGCGGTGGCGGGGTCTGGCGG
ATGGGGGAATGGGTGTGGGGGAGGTCTTAACGCGTGCACAGTGCGTGTAC
CGGGAGCTGGACAACCTTTTGGGGGCCTCGACGGGTGATTTCTTCTTCGG
GCGCGAGCCCACCAGCTTCGACGCCTGCCTTTTCGGACACTTGGCAGAGG
CCCTGGCCGATGTGAACGTGCTGGTCCTTGTCTCTACCTTCGACAACCTC
ATGCGTTTTTTTGGACGGATTGCGGAGGATTTTTTCAACGTTGGGGCGCA
AGCTGCGGCATCTGCTGCCTCTTCCTCGACCTCACTCTCGGCGTCTCTGG
GTGGGCCCGTGCGAGAGCCGCAAGGCTTTTCGATCGCCTCCGACTTGAAA
GAATGCTATAGACACGCGGATTACATGAACAATCGCAACCCTTTCAATCA
AGTGGAGGCGGCCAAACTGTGTGCGGAAGCCCCCTTGGTTCCCGAGCCGA
TGGTTCAGAAGTTTCTAGAGGGAGGAGGACTCCAAGGGAGCGGCGACGCG
TCAGCTGGAGGGAGAGGGGAGGCAGGGGGCGCGCCCGGAAGCAGCGGTCC
CGCGGACGCGTCGGGGAGCACGGGTACGGTGGGGGGCAGGAAGAAAGCAG
AAGAGCTGGAGGAGGAGCGAGAGAGGCGGAGGGAGAATGTGTTGTGGTTG
ACAGTGGTAGGGGGGGTGGTGAGCTTTTTCTTGCTTTTCCAGGGGGTGCT
GGCGCTCGCGACGGGGGAAATAGAGATTGTGGAGGAAGAGGAGGTAGACG
GAGAGATGGAGGAGGAATGAGTCATGTCTGGTGCACGCAGGGGGCAAGTA
AAAGAACACTCGCAGGATGAAGAGAG back to topprotein sequence of rna5630 >rna5630-protein ID=rna5630-protein|Name=rna5630|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MCFLRANLGKHCPILFAIVVLFIKASRCTSSPPMDDAPCSVKGFEAYCAE
FHKDYSANSQEQARRFEAWVKSCLFLEQYKVDHPDASFHMGFNPLSDRLP
EEHDAIFGLKVIPRGREAPSAPSSSSLSSDNLDSHRGLQGFHKHNRSEEE
DSKEQGGEKSEYFVPSELAKDLSPRALPPAVDWRTANLNPEGVVAVTPVK
NQGACGACWAFTTTAAVEGAVAVTTGVLNELSNQELIDCVTQNEGCNGGD
FDYAFKFVVRKGLASTTDYQFTQSQGKCRSGAYPLASRIAAAYETDPCSE
NGLLSIVSRRPVAVAIDGSCDAFIQYKGGIYTQSCGSDLNHAVTIVGYGT
DERTGTDYWVSASPGPSMIDVL back to topmRNA from alignment at CM002466.1:446438..447621- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5630 ID=rna5630|Name=rna5630|organism=Nannochloropsis gaditana|type=mRNA|length=1184bp|location=Sequence derived from alignment at CM002466.1:446438..447621- (Nannochloropsis gaditana)
CCGTGCGTGCGAGCGGCACGTGCAATGTGTTTTCTTCGAGCAAATTTGGG
CAAGCACTGTCCCATTCTTTTCGCTATAGTCGTACTTTTCATAAAAGCTT
CCAGATGTACATCCTCGCCACCAATGGACGATGCCCCTTGCTCTGTAAAA
GGTTTTGAAGCATATTGCGCAGAGTTCCACAAGGACTACAGTGCCAATTC
TCAAGAGCAAGCCCGGCGCTTCGAGGCTTGGGTCAAGTCTTGCCTATTCT
TAGAGCAGTACAAAGTGGACCATCCCGATGCCTCGTTCCATATGGGTTTC
AATCCGCTAAGTGACCGTCTTCCTGAAGAGCATGATGCCATTTTTGGGTT
GAAAGTTATACCTCGAGGGCGAGAGGCCCCGTCTGCCCCTTCTTCCTCCA
GCCTTTCAAGCGATAATTTAGACAGCCATCGAGGCCTTCAGGGTTTCCAC
AAGCACAACCGATCGGAGGAAGAGGATTCGAAGGAGCAGGGGGGCGAGAA
AAGCGAATATTTCGTTCCATCGGAATTGGCTAAAGATCTGTCTCCTAGAG
CTTTGCCCCCGGCGGTGGATTGGCGCACTGCCAATCTCAACCCTGAGGGT
GTTGTGGCCGTGACGCCGGTCAAAAATCAGGGTGCGTGCGGGGCTTGCTG
GGCATTCACGACCACCGCCGCCGTGGAGGGTGCAGTAGCAGTGACGACTG
GGGTCCTCAACGAACTGAGCAACCAGGAGCTGATCGACTGCGTGACGCAG
AATGAGGGGTGTAACGGCGGTGATTTCGACTATGCCTTTAAATTTGTCGT
CAGAAAGGGCTTGGCTAGCACCACTGATTATCAATTTACGCAATCGCAGG
GCAAGTGTCGATCTGGCGCATACCCGCTTGCCTCGCGTATCGCAGCGGCC
TACGAGACCGACCCCTGCAGCGAGAATGGCCTCTTGAGTATCGTGTCCCG
CCGCCCTGTGGCTGTGGCCATCGATGGATCCTGCGACGCTTTCATCCAAT
ACAAGGGGGGGATCTATACGCAGAGCTGCGGGTCGGATCTGAATCATGCG
GTGACCATTGTCGGCTACGGCACGGATGAGAGGACGGGGACGGACTATTG
GGTGAGTGCTTCCCCAGGGCCTTCGATGATCGATGTTCTATGACGAAGGC
CATCACGGGGTCTAATTGAAAAGGTTGGGTTAAG back to topCoding sequence (CDS) from alignment at CM002466.1:446438..447621- >rna5630 ID=rna5630|Name=rna5630|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002466.1:446438..447621- (Nannochloropsis gaditana)
ATGTGTTTTCTTCGAGCAAATTTGGGCAAGCACTGTCCCATTCTTTTCGC
TATAGTCGTACTTTTCATAAAAGCTTCCAGATGTACATCCTCGCCACCAA
TGGACGATGCCCCTTGCTCTGTAAAAGGTTTTGAAGCATATTGCGCAGAG
TTCCACAAGGACTACAGTGCCAATTCTCAAGAGCAAGCCCGGCGCTTCGA
GGCTTGGGTCAAGTCTTGCCTATTCTTAGAGCAGTACAAAGTGGACCATC
CCGATGCCTCGTTCCATATGGGTTTCAATCCGCTAAGTGACCGTCTTCCT
GAAGAGCATGATGCCATTTTTGGGTTGAAAGTTATACCTCGAGGGCGAGA
GGCCCCGTCTGCCCCTTCTTCCTCCAGCCTTTCAAGCGATAATTTAGACA
GCCATCGAGGCCTTCAGGGTTTCCACAAGCACAACCGATCGGAGGAAGAG
GATTCGAAGGAGCAGGGGGGCGAGAAAAGCGAATATTTCGTTCCATCGGA
ATTGGCTAAAGATCTGTCTCCTAGAGCTTTGCCCCCGGCGGTGGATTGGC
GCACTGCCAATCTCAACCCTGAGGGTGTTGTGGCCGTGACGCCGGTCAAA
AATCAGGGTGCGTGCGGGGCTTGCTGGGCATTCACGACCACCGCCGCCGT
GGAGGGTGCAGTAGCAGTGACGACTGGGGTCCTCAACGAACTGAGCAACC
AGGAGCTGATCGACTGCGTGACGCAGAATGAGGGGTGTAACGGCGGTGAT
TTCGACTATGCCTTTAAATTTGTCGTCAGAAAGGGCTTGGCTAGCACCAC
TGATTATCAATTTACGCAATCGCAGGGCAAGTGTCGATCTGGCGCATACC
CGCTTGCCTCGCGTATCGCAGCGGCCTACGAGACCGACCCCTGCAGCGAG
AATGGCCTCTTGAGTATCGTGTCCCGCCGCCCTGTGGCTGTGGCCATCGA
TGGATCCTGCGACGCTTTCATCCAATACAAGGGGGGGATCTATACGCAGA
GCTGCGGGTCGGATCTGAATCATGCGGTGACCATTGTCGGCTACGGCACG
GATGAGAGGACGGGGACGGACTATTGGGTGAGTGCTTCCCCAGGGCCTTC
GATGATCGATGTTCTATGA back to top
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