rna5627, rna5627 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5627
Unique Name	rna5627
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2625
Alignment location	CM002466.1:441392..443583 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100049g39.2102.mrna
Orig protein id	gnl\|cribi\|Naga_100049g39.2102
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:441392..443583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100049g39	gene5439	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25043.1	cds5613	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5627	rna5627-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:441392..443583-
coding sequence from alignment at CM002466.1:441392..443583-

mRNA sequence

>rna5627 ID=rna5627|Name=rna5627|organism=Nannochloropsis gaditana|type=mRNA|length=2625bp
CAGGGGGACTGACGCCCGAATCCGTTCCTTCATCTCACTTCCCTCCGCTG
CACCCTGCACGCTTGCGGAAGAGGAAGGTCGAAGCGCGAGGGCAGCGGTC
GAAGGGAGATAATGGCGTTTACTAGAACAGCATCTTCTAAATTGGTCTCC
CCGGGCCGCACGATTGAGCACTCTTGGACGCCAAATCCGAAATGCTTCAA
CAGCAGCCACCAGGAGAAGCAGTCTAGCCAGCAAAGTCCCTCCACGAGCA
GGTGACCACATGGCACTTTGCGCTCTAAATGTACCCTGTGGTATCCGAAT
GTTCTTAAGACTCGCTTTCCTGTCTGGAGACAGTGCCCTGGGAGCCCTGT
ACAAGCTATAATGGCTGGCTCGATGGCAAGACCGGTAGCAGCAAGAGGAC
AGCAGCTACTGAGCTGGGCAAATAGTTGAAGGAGCTCCGAAAATAACCAC
CTCGTCACAGCACATTGCCAGGGCAGACCAAAGTACCCTGCACACGTAGG
ATAAAGATGTATGACGAGCGTGAGTGAAGAGGGCCTGACAGTCGTGGTCG
TCGAGAGTGAGACAGTGGAAGCGGAAGGGCCTCTCTCCTTGTTCTCGTCT
CGCTGAAGACGTGCCACCCCAGGCCAGAATTCCCGCTATCCACCCGCGGC
ACCTGGAGCCGGTCTCAGGTCCTAACTAGAATGGTTGATCGGGAACTGGA
AACAATCCAAGCTGTGCTACGCGCTAGGGGTGTCGAGCAAGCTAGGACGT
GATATTTTTACAGGCAACGGGCGCACACTCACAAGCGGGCGCACGCCGTC
GATAGCATCAATATAACACGCGGCAGGGGGATGTGGAGGCCCTACGCCGC
GGCAGTGGCACGCCGTTGCGTCAAGCGTCCGACATGGTCTGCAGTCTGTC
ATGGCAGCCCCGGGGGCAGAACCCAGAATTTGAGCACTAGCCATCCCCCC
ACATCAACATTGTCCTCCGCGGCGGTCCCACCTAAAGCGTTCCGGGTCCT
TTCGCCACGTGAAATTTACGAGGGTTTGGAAAAATACGTGATCGGGCAGG
AGGACGTAAAGACCGGCCTGGCGGTAGGTGTCCATGCCCATTATTTGCGT
CTTTATAGCAAAGAGCAAGCAAGGCAGGCAGCCGAGGCCGCGGAGGCGGC
TAACGGGCAACGGAAAAGAAAACATGCGGCGCCTGCATTGGCGGCTCGAG
AGGGCGACACCATGACAGTGTACCACAACGGGAAGACTAGCAGCCTGATC
CTTTCCGAGCCAGGAGACATGGACACGGCTTCGGGCTCCGTCCATCGATT
TTTGCGCGAAGAGATCCTCAACGCCGCCAGCGGAAACCCGTCCTCGCTGA
GCTCTACCTCGAATACGTCTTCTGGGAACGGCAACGACCCCTCCTCCTCC
CCCTCCTTTCCCAATGCCCGCAAAGGGATGACCATCCGCCTGCACCATGA
CCCGCGGCGGCGCACTCGCCCCCGGCCCAGCGTGGAGCCGGTAGAGCTGG
AGAAGTCTAATATCCTCATGCTCGGGCCCACGGGGAGCGGAAAGACGCTG
CTGGCTAAGACGCTGGCCAAGCTCCTGGACGTGCCCCTGGTCCTGACGGA
CGCCACCTGCCTGACTCAGGCCGGCTACGTGGGCGAGGACGTGGAGTCCC
TGCTCTTCAAGCTCTACCAAGCGGCCGGGCAGGATTTGGAGGCGACGGAG
CGGGGTATCATCTACATCGACGAGATCGACAAGCTGTCGAAGCGGGAGAG
TGGGAGCGTCCGCGATGTGTCGGGGGAGGGCGTGCAACAGGCCTTGCTGA
AGATGCTGGAGGGGAACGTGGTGAATGTGCCCAAGGCCGGGGGCCGGAAG
AACCCGCGCGGGGAGCACGTGCAGATCGACACCACGGACATCCTCTTCAT
CTGCGGCGGGGCCTTCGCGGGCTTGGAAGGGGTGATCGCCAGAAGGGTGA
GCCAGGCCTCGATCGGGTTCGGGGCCAGCCTGGGGGGGAAGGGGGGGGGC
AGGGGACCGATCAAGGCGCCTTGTTCGAGAAAGTGGAGCCCGACGATCTG
GTCCAGTTTGGCGTCATCCCGGAGCTGGTGGGGAGGTTGCCGCAGATCCT
GCACACGCAAAGCCTGACGTTCGAGCAGATGATCCGCATCCTGACCGAGC
CCAAGCAGGCGCTGGTGAAGCAGTACGCCTTCCTCTTCGCCATGGAGGAC
GTGGCTTTCCACGTCACGACCCGGGCGCTCGGCTGCGTGGCTCGGATGGC
GCTGGAGAAAAAGACGGGGGCGAGGGGCCTCCGAAGCATCCTCGAGCAGG
CGCTGAAAGAGAGCATGTACCTGGTTCCCGACGACCAGGACGTGAACGCG
GTGGTCCTGGACGCGCGGCCCGTGGGGGAGGGCGAGACGGAGGCGTTGGA
GTAAGTGGGAGGGGAAGGGCGGGCGGAGATAGCGGGGAGGAGCAGAAGTG
TCAGAGGCTTGGGAGGTCGTGGAGGGCGGGAAGGGGCATGCAAAGCGCCA
GATGTATTGCTGAGAGGGCGCGCTCACAGGGCCGTGCACACACGCGACAG
GGTCCTTCTCGTCCGAGGAGAGGAGACGCTTGAGAGCTTCCTGCAGGCCA
GGGAGGCGGAAGGCCTGGGAGGGGG

protein sequence of rna5627

>rna5627-protein ID=rna5627-protein|Name=rna5627|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MAAFGFVSRRVHASVQEEREEARDAEPAAGIEEAHGPRQYGTLADRSLEE
SGERPDGDRHPLIPRGVDSGDPLEAPADPSSSLPYASPPPLFPPLCPRLP
RGGVRLAMSPLRPRLRRRPFHPPHGLHGLPKPLAGPAVSQWRLHVRGPPG
KAGHELSSHRPNLHVRGSNHLPCCLALVLRLQWVRAPPGPSPVRRSAGGG
GQHHVQLHVLFHVHIHFFSTGGVRRKRRGPGRRGGSEATGATQRTSGSHC
RPSWCRRARFWAQACPWLACSCGR

mRNA from alignment at CM002466.1:441392..443583-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5627 ID=rna5627|Name=rna5627|organism=Nannochloropsis gaditana|type=mRNA|length=2192bp|location=Sequence derived from alignment at CM002466.1:441392..443583- (Nannochloropsis gaditana)
GCACACCATTCTATTGGGATGAAAGACATGACAGAAAGCAGGCACCGAAA
TCGTTCCAATTTTTACACCTTGTCTTCATTAAGACGTAGCGGCATTCTCA
TGTCAGCATTGGCACGCACGATTCCTAGTCAACACATGGCACTTTTTCCT
GCAGCCCCTCCATGCGTCTTGAACAAAGGCGATAAGAAAGGGTTTAACTG
AGCATTTAAACCGTCGTCAGAGCCTCACACACACATGTATTTCGATACGC
GCGCAGGCCTTTCCCCTTGGGCCAATGCAAGCGGAACACAAGCCCCTACG
CGACCTGGATTCAGGGAGAGAAATTGTAAGGGTTCAGATCATTCACTTGG
CCCTTGCGGCCTGGGGATTGTCCTCATGGATTTTATTTAACGGTATGTAT
TCGGGGACGGATGCGTGCGTGGTGTGGGAAGTGAGCTGAAAGCCCGGTAG
AGGGAAGGAATGGCATGGCCACGCGTACACGATTCCAGGCTCGAGACCTC
CCCGCATTCGGCCAAGTGTATTCTGTATGTTACTGCCCCCTGTTCCGCAC
ATTCTGCTCGCATGAACACGTTCTCACTAAGTCTCTGCCCCTTCTGTGCC
GGGAGCAGGTCTATGGGGCCAGCTGCCGATGTTTGTGCGGACCCTGCCGG
AGGTAAGTTGTCGCGAGCCACTCAGGCGTCTGTCCCAGGGCGACGAGGAT
CATGACTTTGCTTGTGCCTTATCCTGACTGGATATTTCTGGCCCTCTTGT
CCGTACGTTCCATTTCTCTGGAAGGGAAACAAGCTGGGTGTGCTTATTTT
GACGGCAGAGCAGCTCGCCTACATCTTCCCCTTGCTCTTCATGTACAAAA
AGCGCCACTTTAGCAACTCCCGTCGATCACAAGAGGTACGACTCGAGCTT
CCAAACCTCCAAATCAAGCCCACGCACCAGATTCTAATCCCTTCCCTCCT
CCTCTTGAGCTGCTTGCTCCCTCCCTCCAGACGATTGACACCTCTCCACA
CCTACCATCGTGGTTGCCCCTCTTTCCATCCAGATCGACATTTGGATCCT
CCTCGCCTCGGGGCTTGTCGTCTCCCTCCTTCTCCCGCGCTACTGGCGGG
CCCAAGTCCCTATCCAGGGCGTACCCCATAGCGCCGGCCTCCTCGTCCTC
GCCTTTTTCACCGGCGCCGTCTGCAGCAGCACGGGCGTGGTCTTCACGCC
CTACCTGGCCACACTCCCCAAGAGCTACACCTCCACCCACACGGCCGGGG
CGGGGCTCAGTGGCCTGGCAATCGCCCTCCTCACCCTGGCGGCGGACGCC
GGCTCCCTCCATCCCCGCCTCTCCCCGGGGCACTACTTCAACCTCCTCTC
CCTCGTCCTCCTCGTCGGCATGGCGGCTTTCGGCTTCGTGAGCCGGCGCG
TGCACGCCTCCGTCCAAGAGGAGCGGGAAGAAGCCCGGGACGCCGAGCCT
GCGGCCGGCATCGAGGAGGCGCATGGGCCGCGGCAGTACGGGACTCTGGC
CGACCGGAGTCTGGAGGAGTCGGGAGAGCGGCCTGACGGCGACCGCCACC
CCCTCATCCCCCGTGGGGTCGACTCGGGAGACCCGCTGGAGGCGCCCGCG
GACCCTTCCTCCTCCCTTCCCTACGCCTCCCCCCCTCCACTCTTCCCTCC
CCTCTGTCCGAGACTCCCACGTGGCGGTGTTCGGCTTGCAATGTCTCCTC
TCCGCCCTCGCCTACGGCGTCGTCCCTTCCACCCTCCCCATGGCCTGCAC
GGGCTACCAAAACCCCTCGCGGGTCCTGCTGTTAGCCAATGGAGGCTTCA
TGTGCGCGGACCCCCTGGGAAAGCTGGCCACGAGCTTTCTTCCCACCGGC
CGAATCTTCATGTCCGGGGCAGCAACCATCTGCCTTGCTGTCTTGCTCTT
GTACTGCGCCTTCAGTGGGTCCGCGCCCCCCCTGGCCCTTCGCCCGTACG
GCGGAGTGCTGGTGGTGGTGGCCAACACCATGTTCAGCTTCATGTTCTCT
TTCACGTCCATATCCATTTTTTTTCGACCGGCGGCGTCAGGAGGAAGCGG
CGCGGGCCCGGAAGGCGGGGAGGATCGGAGGCGACGGGGGCGACGCAGCG
TACCAGTGGTTCGCATTGTCGGCCTTCATGGTGCAGACGGGCGCGTTTTT
GGGCACAGGCCTGTCCTTGGCTGGCGTGCTCCTGTGGTCGTA

Coding sequence (CDS) from alignment at CM002466.1:441392..443583-

>rna5627 ID=rna5627|Name=rna5627|organism=Nannochloropsis gaditana|type=CDS|length=823bp|location=Sequence derived from alignment at CM002466.1:441392..443583- (Nannochloropsis gaditana)
ATGGCGGCTTTCGGCTTCGTGAGCCGGCGCGTGCACGCCTCCGTCCAAGA
GGAGCGGGAAGAAGCCCGGGACGCCGAGCCTGCGGCCGGCATCGAGGAGG
CGCATGGGCCGCGGCAGTACGGGACTCTGGCCGACCGGAGTCTGGAGGAG
TCGGGAGAGCGGCCTGACGGCGACCGCCACCCCCTCATCCCCCGTGGGGT
CGACTCGGGAGACCCGCTGGAGGCGCCCGCGGACCCTTCCTCCTCCCTTC
CCTACGCCTCCCCCCCTCCACTCTTCCCTCCCCTCTGTCCGAGACTCCCA
CGTGGCGGTGTTCGGCTTGCAATGTCTCCTCTCCGCCCTCGCCTACGGCG
TCGTCCCTTCCACCCTCCCCATGGCCTGCACGGGCTACCAAAACCCCTCG
CGGGTCCTGCTGTTAGCCAATGGAGGCTTCATGTGCGCGGACCCCCTGGG
AAAGCTGGCCACGAGCTTTCTTCCCACCGGCCGAATCTTCATGTCCGGGG
CAGCAACCATCTGCCTTGCTGTCTTGCTCTTGTACTGCGCCTTCAGTGGG
TCCGCGCCCCCCCTGGCCCTTCGCCCGTACGGCGGAGTGCTGGTGGTGGT
GGCCAACACCATGTTCAGCTTCATGTTCTCTTTCACGTCCATATCCATTT
TTTTTCGACCGGCGGCGTCAGGAGGAAGCGGCGCGGGCCCGGAAGGCGGG
GAGGATCGGAGGCGACGGGGGCGACGCAGCGTACCAGTGGTTCGCATTGT
CGGCCTTCATGGTGCAGACGGGCGCGTTTTTGGGCACAGGCCTGTCCTTG
GCTGGCGTGCTCCTGTGGTCGTA

Synonyms

Publications