rna5620, rna5620 (mRNA) Nannochloropsis gaditana

Overview
Namerna5620
Unique Namerna5620
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1452
Alignment locationCM002466.1:423928..425843 -

Link to JBrowse

Properties
Property NameValue
Productzinc transporter 9
Orig transcript idgnl|cribi|Naga_100098g17.5261.mrna
Orig protein idgnl|cribi|Naga_100098g17.5261
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:423928..425843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g17gene5432Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25067.1cds5606Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5620rna5620-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5620 ID=rna5620|Name=rna5620|organism=Nannochloropsis gaditana|type=mRNA|length=1452bp
ATGTCTCAGGGTTTCTACTCTACAGATCCATTTGGGGACCCCTACTGTCC
TCCTCCCGTACCGACATCGACCCCTGTGTCAAATCCTTTTGGAGAGGGCA
AACCTACCCCCTTTGACACAGACTTATTTAGCAACAAGGCAGTATCCATG
ACCCATTTGCCTCCATTGTCTATACCAACGCCTGTGGGCAATCCATTCGA
GGATGTCGATGCCTTCGCCGCATCTACCCCTCTCGTTCCTGCGAAACCGG
TCGCCTCTCCCGCAGAATTTGGCTTGGCACCTGCGTCGCCTTTACAGTTC
AAGGAGCTGCACGAAGCAATCAGACCTGGTACTGGGGACCGATTGGACCT
TCAATCACGATTATCCCGCACATGTGGTCGCGCCACAGCTTCTGCTAAGC
CTGCATATCCCGATGCGAGCGACTTCGACCCATTTTCCCCCCGGGAGAAA
GCTAGTCCGCGTCTTTCTGCTCAAGCCGCTTTGAAAGGCGATCAGGATAC
TCTCTTTTCTTCCACTGCCCCCTCTCCACTGACACCGACTTCCATGCCAG
CACTTCCCAGCGTTCCACAAACGAGGGACAGCGCTCTGGACGACAGCTGG
AGCATTGAATGGGAGCCGCCACACCCAACCCGGGCTGTGTCCGACAGCGT
CCTCCGAAATGAGCCCAAGCCCGTGAAGAAGTTGGCGGCGTCGACGCCCG
CCTCAATGCTGTCCTCATCGTCGGAAGGATTTGGCTCCCCCTCGACATTT
TGCATGCCCGTTCAGATCCCCGATGGCGTCGTTTTGGCCCGAGTCTCAGC
GCGCAGTATTATCGGTCGAGAATGGAAGCCTGTATACTGGGTCATTGTGA
ACCGACGCCTCTGGATTTACCGTTCGAAGGCAGACTATTACCCGACGGAC
TACATCAAGGATCCCTTTAACAAGCGCATCAAAAAGTGCATTCCTCTCCG
AGAAAGCCTGCAGCTGACATGTATCAAGAACAAGCTTTACCCGGGCGAAA
AGCGAACTCTCTACACTTTTGGAATGGAGAGCATAGAGGAGGGCGGCAAG
AAAACAATGATCGCCAAATTTGCTGCTTATGTCCATAATGATCTCGTTAT
TGCTGTTAGTAAGTCACTCTTCGCCACCCAAAGAGGACATTTACGTTGCT
TGGTTAGCAAGCGGTTTTACCGTGAACATGCAAGGACGCCTAGGTATAGC
ATTAACCGTAGTTTAGCTCTTAGGGACGCGAGATCTTGCAGGTATTTGAG
TCGGCAAGCGACTGAGAGACAATTATCGATAGTGAGTGAGTGGGTACTCA
TGCGTGGTTTAGTGACTGAGACAGATGCGTACATTGTATTCATGGCGTTG
CTCGAACGGCAAGCACCGAGGAACACGGCATTGAAAATCACGACAGACGA
TGCCGAGAAAGAAGATGTTCCAAGATGGCTTTCGACTGTATGCATCTCGT
GA
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protein sequence of rna5620

>rna5620-protein ID=rna5620-protein|Name=rna5620|organism=Nannochloropsis gaditana|type=polypeptide|length=564bp
MLLAASATGRRRLGPGGTTLLRFGLSQSEDDCDSRLKARLLEWKKQQLGV
WVCARGKLPTHPLTRPWHKPYNAAYHISAWALERRHWKRRKDFRPCGAHV
TQRMHIPPSSSSSTGRGPQSRRPLDKPSGAPPHDSTKRPTSKQVKEKSEH
VVKLALGGNVVITIAKFLAWLHSGSSAMLSESIHSLVDSGNQTLLLIGIR
AAATAPDRHHQYGYGKSIYFWSLVSALGTFWLGAGVSLRNSFQDLMSPTV
QLEEITWDVWGVLGVSFLIDGSVLYQTMQLLRDSKPKHLTLWEHIRRIRD
PTTLAVLLEDSGACLGVVMAIVGIGLSHALANPVYDSIGGLCISSLLAAM
GLALARLNERYLLGQAVEPEIVDDIRKLLMARPGIDNVQSVQSQWIGPYT
FAYKAEVDFDGTYLAAKLMARYEDEFLGSARLKEDLPVLLAFYAEDVVRT
LEREVRDVEREIRAVHPEAQFIELEPASKDATAFAIDGHREKMLRELEHI
TLNQLLIAIAKNVVKQQQKQKHTAKQGQVAATRGDAGAGETSQVGDGKGS
EDVDVKGEGNSQKK
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mRNA from alignment at CM002466.1:423928..425843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5620 ID=rna5620|Name=rna5620|organism=Nannochloropsis gaditana|type=mRNA|length=1916bp|location=Sequence derived from alignment at CM002466.1:423928..425843- (Nannochloropsis gaditana)
CACGCAGCACAGGCTTCCGCACCGGGAGATGCTGCTAGCCGCCTCCGCAA
CGGGGCGGCGGCGACTAGGTCCAGGGGGAACTACTTTGCTTCGTTTCGGC
CTCAGCCAGTCAGAAGACGACTGCGACTCACGCCTGAAGGCACGATTGTT
GGAATGGAAGAAGCAGCAGCTAGGTGTATGGGTTTGCGCTCGGGGGAAAT
TACCAACTCATCCTCTGACACGACCATGGCACAAACCTTACAATGCTGCA
TACCACATCAGTGCTTGGGCTTTGGAAAGAAGACATTGGAAGAGAAGAAA
AGACTTTAGACCCTGTGGCGCGCACGTCACTCAACGAATGCATATTCCCC
CCTCTTCGTCCTCCTCCACCGGCAGAGGTCCTCAATCTCGCCGCCCCCTC
GACAAGCCCTCTGGAGCTCCCCCCCATGACTCAACGAAACGCCCAACATC
CAAGCAGGTGAAGGAAAAGTCGGAGCACGTGGTGAAACTGGCCCTCGGCG
GAAACGTGGTCATTACCATCGCGAAATTCTTGGCCTGGCTTCACAGCGGC
TCCTCCGCCATGCTGAGTGAGAGCATCCATTCCCTGGTCGACTCCGGAAA
CCAAACGCTGCTGCTCATCGGCATTCGCGCCGCCGCCACTGCCCCCGACC
GGCACCACCAGTACGGGTACGGTAAATCCATTTACTTCTGGTCGCTAGTC
TCTGCACTAGGCACGTTCTGGCTCGGCGCGGGGGTGTCGCTGCGCAACAG
CTTCCAGGACCTGATGAGCCCGACGGTGCAACTCGAGGAGATCACCTGGG
ACGTGTGGGGCGTGCTTGGCGTTTCGTTCCTCATCGACGGCAGCGTCCTC
TACCAAACCATGCAGCTCCTGCGGGACTCCAAGCCCAAGCACTTGACCCT
CTGGGAGCACATTCGTCGCATCCGGGACCCGACCACCCTAGCGGTCCTGC
TGGAGGACTCAGGCGCATGTCTCGGGGTCGTGATGGCCATCGTCGGGATC
GGGCTTTCCCACGCCCTAGCCAATCCTGTGTACGACAGCATCGGTGGCCT
CTGCATCTCGAGCTTGCTGGCGGCCATGGGCCTCGCTCTGGCCCGGCTGA
ACGAGCGATACCTGCTCGGGCAGGCTGTGGAGCCGGAAATCGTGGACGAC
ATCCGCAAGCTGCTCATGGCGCGGCCAGGCATTGATAATGTGCAATCAGT
CCAAAGCCAGTGGATTGGCCCGTACACTTTCGCTTACAAGGCGGAGGTGG
ATTTCGACGGGACCTACTTGGCTGCCAAGCTCATGGCACGATACGAGGAC
GAGTTCCTGGGATCGGCGCGCCTGAAGGAAGACCTGCCCGTGCTTTTGGC
TTTCTATGCGGAGGATGTGGTAAGAACTTTGGAGAGGGAGGTGAGGGACG
TAGAGAGGGAGATCAGGGCGGTGCATCCAGAGGCGCAATTCATTGAATTG
GAGCCGGCGTCGAAAGACGCCACGGCTTTTGCAATCGACGGCCACCGAGA
AAAGATGTTGCGGGAGCTCGAGCACATCACATTGAATCAGTTACTTATTG
CTATTGCCAAGAATGTGGTCAAACAGCAACAGAAGCAGAAGCACACCGCA
AAGCAAGGACAGGTAGCAGCGACCCGAGGCGACGCGGGGGCAGGGGAGAC
TTCTCAGGTCGGGGATGGCAAAGGGAGCGAGGATGTGGACGTGAAAGGCG
AAGGCAATAGCCAAAAAAAATAAAGCCGAAGATGAAGGCACACATGTAAA
AGAACTGGAGACGAACAACGCAACATAGTGATGGACACTGAAAGAGCATC
TCTCAGGCCTTCATCGCGCGTGCCTGTCTTTGCTCCCAACATGCGTCTCA
GTTTGTCCAAACCGGTCGGCATTGCTTTGTCCTTACCTCTCCTGGCGCTC
ACAAGGAAATGCTGCC
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Coding sequence (CDS) from alignment at CM002466.1:423928..425843-

>rna5620 ID=rna5620|Name=rna5620|organism=Nannochloropsis gaditana|type=CDS|length=1695bp|location=Sequence derived from alignment at CM002466.1:423928..425843- (Nannochloropsis gaditana)
ATGCTGCTAGCCGCCTCCGCAACGGGGCGGCGGCGACTAGGTCCAGGGGG
AACTACTTTGCTTCGTTTCGGCCTCAGCCAGTCAGAAGACGACTGCGACT
CACGCCTGAAGGCACGATTGTTGGAATGGAAGAAGCAGCAGCTAGGTGTA
TGGGTTTGCGCTCGGGGGAAATTACCAACTCATCCTCTGACACGACCATG
GCACAAACCTTACAATGCTGCATACCACATCAGTGCTTGGGCTTTGGAAA
GAAGACATTGGAAGAGAAGAAAAGACTTTAGACCCTGTGGCGCGCACGTC
ACTCAACGAATGCATATTCCCCCCTCTTCGTCCTCCTCCACCGGCAGAGG
TCCTCAATCTCGCCGCCCCCTCGACAAGCCCTCTGGAGCTCCCCCCCATG
ACTCAACGAAACGCCCAACATCCAAGCAGGTGAAGGAAAAGTCGGAGCAC
GTGGTGAAACTGGCCCTCGGCGGAAACGTGGTCATTACCATCGCGAAATT
CTTGGCCTGGCTTCACAGCGGCTCCTCCGCCATGCTGAGTGAGAGCATCC
ATTCCCTGGTCGACTCCGGAAACCAAACGCTGCTGCTCATCGGCATTCGC
GCCGCCGCCACTGCCCCCGACCGGCACCACCAGTACGGGTACGGTAAATC
CATTTACTTCTGGTCGCTAGTCTCTGCACTAGGCACGTTCTGGCTCGGCG
CGGGGGTGTCGCTGCGCAACAGCTTCCAGGACCTGATGAGCCCGACGGTG
CAACTCGAGGAGATCACCTGGGACGTGTGGGGCGTGCTTGGCGTTTCGTT
CCTCATCGACGGCAGCGTCCTCTACCAAACCATGCAGCTCCTGCGGGACT
CCAAGCCCAAGCACTTGACCCTCTGGGAGCACATTCGTCGCATCCGGGAC
CCGACCACCCTAGCGGTCCTGCTGGAGGACTCAGGCGCATGTCTCGGGGT
CGTGATGGCCATCGTCGGGATCGGGCTTTCCCACGCCCTAGCCAATCCTG
TGTACGACAGCATCGGTGGCCTCTGCATCTCGAGCTTGCTGGCGGCCATG
GGCCTCGCTCTGGCCCGGCTGAACGAGCGATACCTGCTCGGGCAGGCTGT
GGAGCCGGAAATCGTGGACGACATCCGCAAGCTGCTCATGGCGCGGCCAG
GCATTGATAATGTGCAATCAGTCCAAAGCCAGTGGATTGGCCCGTACACT
TTCGCTTACAAGGCGGAGGTGGATTTCGACGGGACCTACTTGGCTGCCAA
GCTCATGGCACGATACGAGGACGAGTTCCTGGGATCGGCGCGCCTGAAGG
AAGACCTGCCCGTGCTTTTGGCTTTCTATGCGGAGGATGTGGTAAGAACT
TTGGAGAGGGAGGTGAGGGACGTAGAGAGGGAGATCAGGGCGGTGCATCC
AGAGGCGCAATTCATTGAATTGGAGCCGGCGTCGAAAGACGCCACGGCTT
TTGCAATCGACGGCCACCGAGAAAAGATGTTGCGGGAGCTCGAGCACATC
ACATTGAATCAGTTACTTATTGCTATTGCCAAGAATGTGGTCAAACAGCA
ACAGAAGCAGAAGCACACCGCAAAGCAAGGACAGGTAGCAGCGACCCGAG
GCGACGCGGGGGCAGGGGAGACTTCTCAGGTCGGGGATGGCAAAGGGAGC
GAGGATGTGGACGTGAAAGGCGAAGGCAATAGCCAAAAAAAATAA
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Synonyms
Publications