rna562, rna562 (mRNA) Nannochloropsis gaditana

Overview
Namerna562
Unique Namerna562
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length707
Alignment locationCM002455.1:1388956..1391244 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100310g2.1347.mrna
Orig protein idgnl|cribi|Naga_100310g2.1347
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1388956..1391244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100310g2gene541Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna562rna562-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30112.1cds562Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna562 ID=rna562|Name=rna562|organism=Nannochloropsis gaditana|type=mRNA|length=707bp
GCTCCTTAAAATATGCCGTTTCCAGCTGGCACACCAAAGAGGAGAGAGAA
GGGCCAGGGCTGGTGGAACACGCAGGGAAGAATCCGCCAGATGCGTGTCA
GTGTGGAATTCGTGACTGGCTGTTCGGAAGCAAGTAATGCTGATGTTTTT
TTCTCTCTCGTTCTTCAGGTTTGCTGACATTGCTGCAACCATCCCAAATC
AGAGAAATACAAGGAGACCTCTGCACACAATATGGATTCGCTCCAGGCCT
TTGTTTCCCAACCTTTGAAGGGCTCAGCTGCCAACCCTCACAACGAGGCT
TTGCAAGGGCAGATTCAGCGTGCGCTTGACTTGATCTGTACGGTCCTAAC
TCTTTTCCCCCTCGAAATGCTGGCGCTGACGTTCAACGGAGGAAAAGATG
CCTGCGTGGTTTTTCATTTGGTGCGACTAGCGCTACGGTTGCGAGGCGTG
GCAGAAGGAGAGGCTAGCGGGCGACTGAAAGTCCTTTACTTCTCGCCCGA
ACACGGGGATTTTCCAGAAGTAATCTCGTTCATGGCCAAAATATCCGAAG
ACTATCATGTCACGTACACGACCTACCCCGCGGGGACCTCTTTCAAGGAC
GGGATGCGGGACCTGGTGGAGAAACAAGGATTGAAAGCCGTCTTCCTGGG
CGTCCGGCGGGGTGACCCCCATTCGTGTGCGTGGAAGAGGGGGGGAGAGA
CGGAAGG
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protein sequence of rna562

>rna562-protein ID=rna562-protein|Name=rna562|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MTSHIPRAFPRFRRALTIMTALAVGFGVLLTNMYAPKKAATTEMSARGLH
SQTAKTRLRIGDVTALAKAPFAHWAKADASGASWASTDTQDITRKRKNVE
VEKMEAKEPLVGGSLWRALEAELRGRPDFEALTSTKSVCPFRRQAEMAQT
QACFRARKGSAFLLHMRKAGGTTLRNYLSALVENDREQLVYVAEGRTFNV
SCFHDQGEMMILTSLRQPLARILSSYWYEGRYDYKPAPLVPGTDPALAAA
IYDETKAKAAVPLSFQDWVRYVRQMDYVRWTRASARGVWYSVDNYYVQTL
TNRYRHNTYAEVGKHDYELARRILASFDVVMITEWMGWANQTAYVQESLG
EKGKDPSRGMNQRNKLIRLRDDTEIDREMFASVWRANTWDLLLYEFAKNL
VTDRLAAFEKEKLQVGAQERSKEALSAANRSSQEGERKELVCQASRNDPR
WRRDGRQDYYKPNPDSYLYVMPQCMDPQMHVEMLKTDLR
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mRNA from alignment at CM002455.1:1388956..1391244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna562 ID=rna562|Name=rna562|organism=Nannochloropsis gaditana|type=mRNA|length=2289bp|location=Sequence derived from alignment at CM002455.1:1388956..1391244+ (Nannochloropsis gaditana)
AAGCAAATAAGACAGAACTCGAACGATAGTattcttgggggggggggagg
tgggcgcGACCTGTAATTGGAGAAATGTGCAGCCATCTCCACGAACCTCT
TTGTCTCCCTTTAAATCGTAATTTTGCAGCTTTCTTCCTCGGACAGAATT
TCTCACAGGCTGCAGGGGTAGTAGCGCATTTCTGCAATTTCTGTGTCCCA
ATTTGGCCTCACAGCGCGCTTTCGCCGGCTTCTCTGCCTCAACACCTAGG
CCCATAGAAAGTCTGCGTCTAATCAAATATTAAAACCCAGCATCTAACCA
GGCACTTGCAAGTCTTGTCTTCAAACCGCACAGCGCCAATCGTGCGATTT
TTCTGCTGTCAGACGAATTTCGAAGCACATACTTATTCGAGTGCAGCGCC
TTCTCACTTTGAAGCCTGAACCATCTTCAGAATGACATCCCACATTCCAA
GAGCCTTTCCGCGCTTTAGACGGGCATTGACCATCATGACCGCGCTCGCC
GTGGGATTTGGCGTCCTCCTTACAAACATGTATGCCCCCAAAAAAGCTGC
CACCACGGAAATGTCTGCCCGGGGTTTGCATTCGCAGACCGCCAAGACTC
GACTGAGGATCGGCGACGTGACCGCATTAGCAAAAGCCCCCTTTGCTCAC
TGGGCCAAGGCGGACGCAAGCGGTGCGTCATGGGCGTCCACGGACACTCA
AGATATCACCAGAAAGCGCAAGAATGTGGAAgtggaaaaaatggaggcgA
AAGAACCTTTGGTGGGAGGCAGCCTGTGGCGTGCTTTGGAAGCAGAGTTA
CGGGGGCGTCCTGATTTCGAAGCTTTGACATCCACCAAATCCGTGTGCCC
TTTTCGAAGACAGGCAGAAATGGCACAGACACAGGCTTGTTTCCGGGCGC
GCAAGGGCAGCGCTTTCTTGTTGCACATGCGAAAAGCAGGTGGAACGACC
TTACGGAATTATCTGAGTGCCTTGGTGGAGAATGACCGCGAACAACTGGT
TTACGTTGCCGAAGGGCGCACATTCAATGTGTCCTGCTTCCATGACCAGG
GTGAGATGATGATTTTGACCTCCCTGCGACAGCCTCTGGCGCGGATCTTG
TCCTCCTACTGGTACGAAGGTCGGTACGACTACAAACCTGCCCCTTTGGT
TCCCGGCACGGACCCCGCCTTGGCTGCCGCGATCTACGACGAGACCAAGG
CGAAAGCTGCCgtgcccctttccttccaagaCTGGGTTCGGTACGTCCGG
CAGATGGATTACGTCCGCTGGACCCGGGCGAGTGCGCGGGGAGTCTGGTA
CTCGGTGGACAATTACTACGTGCAAACGTTGACAAACCGATACCGGCATA
ACACCTACGCAGAGGTTGGAAAGCACGACTACGAGCTGGCCCGACGTATC
CTCGCGAGTTTTGACGTGGTGATGATCACGGAATGGATGGGGTGGGCGAA
CCAGACGGCTTACGTGCAAGAGAGcttgggggaaaaggggaaggatcCTA
GCAGGGGGATGAACCAGAGGAACAAGCTGATCCGCCTGCGTGACGACACG
GAAATCGACCGGGAGATGTTTGCGTCGGTCTGGCGGGCCAATACGTGGGA
CCTACTCTTGTACGAATTTGCGAAAAATCTGGTGACCGACCGTTTGGCGg
cttttgaaaaagaaaagctaCAAGTCGGGGCTCAGGAACGGAGTAAAGAA
GCCCTCTCAGCGGCCAATCGCAgcagccaggagggagaaaggaaggaatt
GGTCTGTCAGGCGTCCAGAAATGACCCCCGGTGGAGACGAGACGGGAGAC
AGGACTACTACAAACCCAACCCGGATTCCTACTTGTACGTTATGCCCCAA
TGCATGGACCCCCAGATGCATGTGGAGATGCTTAAGACGGACCTGAGATG
ACGGGCAAGGCGCTGTTTGAGCATGTCTTAGGCTATGCGGCGTCATGAAT
GCCTCGATAGGTCACGTTGACTCTTGGCTTTGGGAGGTGTGAGTTAGAGG
AAGGCTTTGGGGAAGGGCAAAGTACCAGGGAGAAATTGACTTCGAGGGTA
ATTTGTGGGAAAGAATTGTAAAATTGATTGCTGTTCGGAACCTCAGACGT
TGGGTACGTCTCCAAATGTgcgacaagggagaggaggaaatatCCAGCAA
TTGGCGTGGCAGATCTGAAATTTTGCACGGCCAGCGTAAATGAGAAAGAA
ACATCACTGGGAAaacgaagggggggagaaccGAGACACAGGTCAAGGGC
TGGAGCCACAGACCCcacgcctttcctccgccttcacgt
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Coding sequence (CDS) from alignment at CM002455.1:1388956..1391244+

>rna562 ID=rna562|Name=rna562|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002455.1:1388956..1391244+ (Nannochloropsis gaditana)
ATGACATCCCACATTCCAAGAGCCTTTCCGCGCTTTAGACGGGCATTGAC
CATCATGACCGCGCTCGCCGTGGGATTTGGCGTCCTCCTTACAAACATGT
ATGCCCCCAAAAAAGCTGCCACCACGGAAATGTCTGCCCGGGGTTTGCAT
TCGCAGACCGCCAAGACTCGACTGAGGATCGGCGACGTGACCGCATTAGC
AAAAGCCCCCTTTGCTCACTGGGCCAAGGCGGACGCAAGCGGTGCGTCAT
GGGCGTCCACGGACACTCAAGATATCACCAGAAAGCGCAAGAATGTGGAA
gtggaaaaaatggaggcgAAAGAACCTTTGGTGGGAGGCAGCCTGTGGCG
TGCTTTGGAAGCAGAGTTACGGGGGCGTCCTGATTTCGAAGCTTTGACAT
CCACCAAATCCGTGTGCCCTTTTCGAAGACAGGCAGAAATGGCACAGACA
CAGGCTTGTTTCCGGGCGCGCAAGGGCAGCGCTTTCTTGTTGCACATGCG
AAAAGCAGGTGGAACGACCTTACGGAATTATCTGAGTGCCTTGGTGGAGA
ATGACCGCGAACAACTGGTTTACGTTGCCGAAGGGCGCACATTCAATGTG
TCCTGCTTCCATGACCAGGGTGAGATGATGATTTTGACCTCCCTGCGACA
GCCTCTGGCGCGGATCTTGTCCTCCTACTGGTACGAAGGTCGGTACGACT
ACAAACCTGCCCCTTTGGTTCCCGGCACGGACCCCGCCTTGGCTGCCGCG
ATCTACGACGAGACCAAGGCGAAAGCTGCCgtgcccctttccttccaaga
CTGGGTTCGGTACGTCCGGCAGATGGATTACGTCCGCTGGACCCGGGCGA
GTGCGCGGGGAGTCTGGTACTCGGTGGACAATTACTACGTGCAAACGTTG
ACAAACCGATACCGGCATAACACCTACGCAGAGGTTGGAAAGCACGACTA
CGAGCTGGCCCGACGTATCCTCGCGAGTTTTGACGTGGTGATGATCACGG
AATGGATGGGGTGGGCGAACCAGACGGCTTACGTGCAAGAGAGcttgggg
gaaaaggggaaggatcCTAGCAGGGGGATGAACCAGAGGAACAAGCTGAT
CCGCCTGCGTGACGACACGGAAATCGACCGGGAGATGTTTGCGTCGGTCT
GGCGGGCCAATACGTGGGACCTACTCTTGTACGAATTTGCGAAAAATCTG
GTGACCGACCGTTTGGCGgcttttgaaaaagaaaagctaCAAGTCGGGGC
TCAGGAACGGAGTAAAGAAGCCCTCTCAGCGGCCAATCGCAgcagccagg
agggagaaaggaaggaattGGTCTGTCAGGCGTCCAGAAATGACCCCCGG
TGGAGACGAGACGGGAGACAGGACTACTACAAACCCAACCCGGATTCCTA
CTTGTACGTTATGCCCCAATGCATGGACCCCCAGATGCATGTGGAGATGC
TTAAGACGGACCTGAGATGA
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Synonyms
Publications