rna5617, rna5617 (mRNA) Nannochloropsis gaditana

Overview
Namerna5617
Unique Namerna5617
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002466.1:415170..416975 +

Link to JBrowse

Properties
Property NameValue
Productextrinsic protein in photosystem ii
Orig transcript idgnl|cribi|Naga_100098g14.5268.mrna
Orig protein idgnl|cribi|Naga_100098g14.5268
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:415170..416975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g14gene5429Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5617rna5617-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25074.1cds5603Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5617 ID=rna5617|Name=rna5617|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGTCGGACATCTTTCGATCAATTTTTTTGGTGGATCATGAACAGGCTAT
GTCCAGTTTACATATGTGGAATGACTCTGTCAAGATAATAGGTAATCCCC
TCGAAATGGCTGTTCGTGATGCCAGGCTTCATGGTGTTGGAGACAGCGCC
GGTAGAAAGTTAATGGGCGGTATCAGAGGAAGAATGACTCACCAGAGATA
A
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protein sequence of rna5617

>rna5617-protein ID=rna5617-protein|Name=rna5617|organism=Nannochloropsis gaditana|type=polypeptide|length=186bp
MRVISTAAFLALLGSAIAFIPQAPQSTQKMDLGKAVQKLLVGPALVLGVY
GGPMIQPVHADGSVSSTTVQRASGLYGPRVIALKDAVAKGDFAALDKADG
AIRLFNSGAFALNKPQKLKVQALYNDVRAAVVKKDASRLKTAWAMYFKEA
GLDKTNPFSLKDAGQSYSGDFDFRRGSPLFDPRVGN
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mRNA from alignment at CM002466.1:415170..416975+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5617 ID=rna5617|Name=rna5617|organism=Nannochloropsis gaditana|type=mRNA|length=1806bp|location=Sequence derived from alignment at CM002466.1:415170..416975+ (Nannochloropsis gaditana)
AAACTGGACATAGCCTGTTCATGATCCACCAAAAAAATTGATCGAAAGAT
GTCCGACATGTGGTGCGTCACAACGGAATAAGGCACTTTTTTCTCCCTGC
AGACCGCCGGGGCGTTGAAGTTTGAACACAAGCATCGTAAGATACGCCCC
TGAGTTCTGATGCTTGAGCGGCATCAGTTGCTCTGAAAACAAGCTGATTG
TGCGCCAATATGCGCAAAATGCTTTTTCCATATGTGGATTGTGAAGGTCC
ACGCAGCAGCTGGTGAGTCGACACGTTCTACTCGTCCGTTGTTTATTTCA
AGGGGCAAAAGATTTTCGTGCTTGCCTGCTTTTGccagcaagagcaagaa
agaagaaCGTTGACGGGCATTGCTCGTATAAGCAGTCGCGTCACAAAAGA
TGGATGAGCAGAACAGTTTCACTATTCTGTCAAATGCATCACGCGTAGAC
AAGATAATCTAGCTGTGTCTCAAAATCATACTGATGCCTttgcatctctt
tctccttctagATATCCGACTACTATGCGTGTCATCTCAACTGCAGCTTT
TTTGGCCCTTCTAGGctccgccatcgccttcatTCCTCAGGCACCTCAGT
CCACGTAAGTTCGTACTGCAACACCGTTTCACTGTTCCTTGTTGGTGGTT
CCCACTTGTCCTTGCCTCGGACCTTATCCCCCGTGCATGTCGGTGGGATC
TCGAGATGCATGGTGCGCGAGGCAGCAAGACCTTCTGGTGCATAATCAAC
AAGATGGATGCATTGGCCCATGCGCATGGGAAAATCATAACATTCGTCAT
ATTTGTTGAGCAACCGCTATCCCTTGGTCTTATTCTCCATGCATCTGTTC
GAATCCGCACAGTCAGAAGATGGACCTTGGCAAGGCAGTCCAGAAACTCC
TCGTAGGCCCCGCTCTAGTCCTCGGCGTTTACGGGGGCCCCATGATCCAG
CCCGTGCACGCCGACGGGAGTgtgtcctccacgaccgtCCAGCGCGCAAG
TGGGCTTTACGGTCCACGCGTCATTGCCTTGAAGGATGCTGTCGCCAAGG
GCGACTTTGCGGCACTGGATAAGGCAGATGGCGCGATACGCTTGTTCAAC
AGCGGAGCATTTGCCCTCAACAAGCCTCAAAAATTGAAGGTCCAGGCCCT
TTATAACGACGTGAGGGCCGCAGTGGTGAAGAAAGATGCGAGCCGCCTGA
AGACGGCTTGGGCCATGTACTTCAAGGAAGCGGGATTGGACAAGACCAAC
CCCTTCTCGCTCAAGGACGCAGGGCAAAGCTATTCTGGAGACTTTGATTT
CCGCCGTGGCTCGCCCCTTTTCGACCCGCGCGTGGGAAATTAAACAGTCA
ATTTGAAGGAATTCGCTGACAACGGACGGCCATTCGGGTAAGGGGTATAG
GAGGGGAGTGCAAAAGTGACGGCTGGGGTATCAGATGAAGGTGAGAAGGC
TTGAAAGAGCAGTCATTGGGATGAGAAAGTTTTCCGGAACGAAAGTCGAC
GAGCCATCTGGCCCAATCTGCGTGAGCCACCGGGTACTGCATGCCGCATG
TTCAGAGCGAAATCCGTtctggaaaaagaagaatgaATTTCAGTGCATTT
GCCGTCCTGCGACTGGAAAACCAAGGCGACGGGGTGTTTTTTAAAAGAAG
CTCGTTTGAGAATCGACCTCCTTCCACGATTATTTAGTTTACTTTCAGAC
ATCTCGAGCTTCCATATTGGAACAAGATCTAGGTAGTTTTACAAGTGTTA
CCAGCCTAATTTGATCAAGCACAATGGAAGACGAGAAGAACATAACTCCT
GTAGCC
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Coding sequence (CDS) from alignment at CM002466.1:415170..416975+

>rna5617 ID=rna5617|Name=rna5617|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at CM002466.1:415170..416975+ (Nannochloropsis gaditana)
ATGCGTGTCATCTCAACTGCAGCTTTTTTGGCCCTTCTAGGctccgccat
cgccttcatTCCTCAGGCACCTCAGTCCACTCAGAAGATGGACCTTGGCA
AGGCAGTCCAGAAACTCCTCGTAGGCCCCGCTCTAGTCCTCGGCGTTTAC
GGGGGCCCCATGATCCAGCCCGTGCACGCCGACGGGAGTgtgtcctccac
gaccgtCCAGCGCGCAAGTGGGCTTTACGGTCCACGCGTCATTGCCTTGA
AGGATGCTGTCGCCAAGGGCGACTTTGCGGCACTGGATAAGGCAGATGGC
GCGATACGCTTGTTCAACAGCGGAGCATTTGCCCTCAACAAGCCTCAAAA
ATTGAAGGTCCAGGCCCTTTATAACGACGTGAGGGCCGCAGTGGTGAAGA
AAGATGCGAGCCGCCTGAAGACGGCTTGGGCCATGTACTTCAAGGAAGCG
GGATTGGACAAGACCAACCCCTTCTCGCTCAAGGACGCAGGGCAAAGCTA
TTCTGGAGACTTTGATTTCCGCCGTGGCTCGCCCCTTTTCGACCCGCGCG
TGGGAAATTAAATGCGTGTCATCTCAACTGCAGCTTTTTTGGCCCTTCTA
GGctccgccatcgccttcatTCCTCAGGCACCTCAGTCCACTCAGAAGAT
GGACCTTGGCAAGGCAGTCCAGAAACTCCTCGTAGGCCCCGCTCTAGTCC
TCGGCGTTTACGGGGGCCCCATGATCCAGCCCGTGCACGCCGACGGGAGT
gtgtcctccacgaccgtCCAGCGCGCAAGTGGGCTTTACGGTCCACGCGT
CATTGCCTTGAAGGATGCTGTCGCCAAGGGCGACTTTGCGGCACTGGATA
AGGCAGATGGCGCGATACGCTTGTTCAACAGCGGAGCATTTGCCCTCAAC
AAGCCTCAAAAATTGAAGGTCCAGGCCCTTTATAACGACGTGAGGGCCGC
AGTGGTGAAGAAAGATGCGAGCCGCCTGAAGACGGCTTGGGCCATGTACT
TCAAGGAAGCGGGATTGGACAAGACCAACCCCTTCTCGCTCAAGGACGCA
GGGCAAAGCTATTCTGGAGACTTTGATTTCCGCCGTGGCTCGCCCCTTTT
CGACCCGCGCGTGGGAAATTAA
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Synonyms
Publications