rna5616, rna5616 (mRNA) Nannochloropsis gaditana

Overview
Namerna5616
Unique Namerna5616
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1439
Alignment locationCM002466.1:415028..415228 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100098g13.5272.mrna
Orig protein idgnl|cribi|Naga_100098g13.5272
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:415028..415228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g13gene5428Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25078.1cds5602Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5616rna5616-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5616 ID=rna5616|Name=rna5616|organism=Nannochloropsis gaditana|type=mRNA|length=1439bp
CGAGAGTGCATCTTTTGAGTAAACAAAAAGCAACCGATGTAATGTAGTCT
CGTTTCCTCCTTCAAGCCTCGCCAAGGCGGAAGAAAGCGAGGACGTGACA
CAGGAACACAGACCAATGCCACTGCGGCCACGCGAGGCTTGATTGTTGCA
TTTGCGCGCCCTAGGCGCACTGCCTGGCTAGATACCTTAATTATGTTTTG
TTCTGTGACCACTCACTGCGGCCCTCAACTCACAAAACCTGTCACAATGG
CTTTCTCGCCCTCCACCTTCCTCGGCACCGAACGACTTCGAAAGGGCCCC
AAAGCAGAAACCAGAGCAACGGATTAGGCCGCAGGGCTGGCAACTACGAA
TTCATGCATCGTCTGCAAGACTTGTTTCGTAACCTCCAAGGTGGAGGCCA
AGTACCCACGCCTGACGGACCTGTCGTCGATTCATCAGAGAAGGTGCACA
TCAGCTCGCTAGCATTGTTAAAAATGCTTAAGCACGGTCGCGCAGGAGTG
CCGATGGAGGTGATGGGCTTGATGCTCGGGAACTTTGTTGACGACTACAC
AGTGAACTGCATCGATGTCTTCGCCATGCCGCAGTCGGGGACCAGTGTAA
CGGTCGAAGCCGTGGATCCAGTCTTCCAACACAAGATGCTGGAAATGCTC
AAGCAGACAGGGCGCCCAGAGATGGTGGTGGGATGGTATCACAGCCATCC
GGGTTTCGGATGCTGGCTTTCGGGCGTCGACGTCAACACTCAACAGAGCT
TCGAGCAGCTGAACCAGAGAGCCGTGGCGGTGGTCATCGACCCCATCCAG
TCCGTGAAGGGCAAGGTCGTCATCGACGCGTTCCGGACCATCAACCCCCA
GCTCATGCTCCTGAACCAGGAGCCGCGCCAGACCACCTCAAACATAGGGC
ACCTCAACAAGCCCTCCATCCAGGCCCTAATTCACGGTCTCAACCGACAC
TACTACTCCATCGTCATTGACTACCGGAAGAACGAGCTGGAGGAGCAGAT
GCTTATGAACCTTCACAAGAAGAGCTGGACCCACGGGTTGAACATGCAGC
GCTTTGAGGACCACCATAGAGCAAATGAAACGACCATTGAGGCCATGCTG
AAATTAAGCAAAGACTACAACGAGCGGGTGAAAGAGGAAGAGGGCAAGAC
GGCCGAGCAACTTCTCGTCGGGAACGTTGGAAAAATCGACCCAAAAAGGC
ATTTGGACAGCGATGTTGCTACTCTCATGGCTAGTAATATCGTTCAGTGC
TTAGGTGCGATGCTTGACACCATTGTATTTTGAAAATCAATCAAGAACAG
AAATTGTAAGGAGAGGAGCGGACAAAGGCAAGCAACGGGTGTCACGACCG
TGATACACTTTTGGAGAGGTGTTAAAACAAAACCAAAAAGAAAATCGAAA
AAGCTTTGAAGGGGATGGTTGTTCAGTCATCGTTCCTGA
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protein sequence of rna5616

>rna5616-protein ID=rna5616-protein|Name=rna5616|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MSDIFRSIFLVDHEQAMSSLHMWNDSVKIIGNPLEMAVRDARLHGVGDSA
GRKLMGGIRGRMTHQR
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mRNA from alignment at CM002466.1:415028..415228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5616 ID=rna5616|Name=rna5616|organism=Nannochloropsis gaditana|type=mRNA|length=201bp|location=Sequence derived from alignment at CM002466.1:415028..415228- (Nannochloropsis gaditana)
ATGTCGGACATCTTTCGATCAATTTTTTTGGTGGATCATGAACAGGCTAT
GTCCAGTTTACATATGTGGAATGACTCTGTCAAGATAATAGGTAATCCCC
TCGAAATGGCTGTTCGTGATGCCAGGCTTCATGGTGTTGGAGACAGCGCC
GGTAGAAAGTTAATGGGCGGTATCAGAGGAAGAATGACTCACCAGAGATA
A
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Coding sequence (CDS) from alignment at CM002466.1:415028..415228-

>rna5616 ID=rna5616|Name=rna5616|organism=Nannochloropsis gaditana|type=CDS|length=201bp|location=Sequence derived from alignment at CM002466.1:415028..415228- (Nannochloropsis gaditana)
ATGTCGGACATCTTTCGATCAATTTTTTTGGTGGATCATGAACAGGCTAT
GTCCAGTTTACATATGTGGAATGACTCTGTCAAGATAATAGGTAATCCCC
TCGAAATGGCTGTTCGTGATGCCAGGCTTCATGGTGTTGGAGACAGCGCC
GGTAGAAAGTTAATGGGCGGTATCAGAGGAAGAATGACTCACCAGAGATA
A
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Synonyms
Publications