rna5614, rna5614 (mRNA) Nannochloropsis gaditana

Overview
Namerna5614
Unique Namerna5614
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1942
Alignment locationCM002466.1:411952..412635 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100098g11.5255.mrna
Orig protein idgnl|cribi|Naga_100098g11.5255
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:411952..412635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100098g11gene5426Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25061.1cds5600Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5614rna5614-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5614 ID=rna5614|Name=rna5614|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp
GCCATGAAGAATGGTCATCCTTTGAATTTTACACCATTCTGTCAATCAAA
GCTTCCTGAGTCAACACATGTGTGGCGATCATCTCCGCTGACCCCCCGAA
GAAGAAGCATATTGCATGAACATCTGTGGTAAACTAGGGATCAACTCTAG
CTAGAGCCCGCGAGCGGCAGGACGGTACATCCTGTGTTCTTCCCGGATGA
CCTAGCTAGTACATTTGTATACTCCTCAACGTCCCTCGTGGCTCCTGTCT
ACGCTCATCCTACTCTCCTCAGACCCCCTCACCAACAGAGGCACGGCATA
CTTTTTCCCATTTCTGCTCGATATAAATAGACAGGAGAATGGGACGCTCT
GAGAACGGCTACTACGCAGGTCTTGGCGGCCAAGGTGCAGGTTTGGCTGC
TTTTCTCACAACGGTCCTGGGCTACACTCTTGTAAACAAAATGCTGAGCG
CCCCATGGAGCAGACCCTCTTCCTCATCCTCCCGGGCCATTCGGAGCATG
GACAGATCATCACTCGGGCTTGCAGGACCCCCAAAGTCTTCGTCGTCAGG
CATGGCGCCCTCTTCACACTCCCTTCCTTACCAGGTTGGACTCCTCGACC
TGACCGTCCCCAGCAAGCACAGCGGAAATTACAACAATCTCCTTCTTGCC
AACGACATCTGCATAGAAAAAGCTGTCCAGTCTGTGAGTGAAACCTTATA
CGTATACCTGCGGGAGGATCCGGCTGCTGTTGCAGCTGCCGCCACGGCCG
CCATCTCGAATGACGCTCCCAGCGTCCCCGTGAGCCCAACCACACCCGAA
CTTCGTGTGTACCTGTCCGAGCTCTACGGACAGCTGTGGGACGTTTGCAA
TTTACACCGGAATCTGCCTTTAGATGTGAGGGTGTTGTATAACACCACTG
AACCTGCCCTCCCGGTTGCCCCCGCCCTGCCTGTGGACAAGACATTGGCT
ACTCCGGGTCTGCAGGAGATGTCAGCGTCATTGCACACCGCTAGCGTACC
CTCCCCTGTTCCAACCCCCCCCTCGTCGGCACAAAAGGCGCACCGACCGG
GGGAAAATCCTACAAGCTGGGAGGAAGTCCTACTCAAACCCGAACTTCAG
GTAGTGTTTACGCGGCACTCGAGCTCGGGATCGGACGAGCTGACTTGCGC
CAAGCGCGCCGCCCTGGGGCTTCCCCCCGTCCACGTCGAGTGGCTGGATG
AGGCCACACATGTGGCTCTGAGCACTCCCTTCTACTATTTGGAGGACGAA
AAGACCTGCATCCCGCACTTTCCCCGGGTGGCCCTCGGCGGCACCTTTGA
TCGTCTTCACAACGGGCACAAGAAGCTTCTGAGCTTGGCCGCCTGCATAT
GTCAGTCGCGACTCACGATCGGGATCACTTCCACCGAGATGCTCGCCAAG
AAGAAGAACGCCGGACAGATCGAGCCCCTGGAGGAGCGTATAGATGCTGT
GCAATCCTTCCTGCTCAGCGTCTTCCCCAACCTGGCCGTGGATGTGGTGG
TATTGAAAGACCCATTTGGTCCTCCTGTGCATGATCCAAATTTCGACGCG
ATCGTGGTCTCCTCGGAAACCATCGCAGGGGCAGCGAAAATAAACGAAAT
TCGCGCGGAAAAAGGCATGGCTCCCCTTGTAATCGTCGTGACGAGACGGA
CCGTCAGCAGTCTTTTATCCTCGACCTTTATACGGAACAATTTGCCGGCA
CGCAGAAGCTTTCCTCGATAGCCCCTTGCACGATGTAGGGAGCAGGGGAG
CAGCGTTGGGTTTTTAATGGGGGTGGGGGTGATATTAGGTCGGCATGTTC
AGGGTTAACCCTAACCCTAACCCTAACGGGATCGAGAGGAGGGGTAGTCT
CCCAAGGGACGAGCATGCGGACTCGTGGGTGGGAGGTGTGTAAATAACGA
ATGTAAGAAGAAAGTAATCGATATATCAATCTGCCGTCGACT
back to top

protein sequence of rna5614

>rna5614-protein ID=rna5614-protein|Name=rna5614|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MVIGTSRFPKQARTYDLVIMVSMTYCENANTDNTDRRGRRFLRLATSQHS
IRTKKMRAQKEMRSIVALIAI
back to top

mRNA from alignment at CM002466.1:411952..412635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5614 ID=rna5614|Name=rna5614|organism=Nannochloropsis gaditana|type=mRNA|length=684bp|location=Sequence derived from alignment at CM002466.1:411952..412635- (Nannochloropsis gaditana)
GGCGAGGCTTGAAGGAGGAAACGAGACTACATTACATCGGTTGCTTTTTG
TTTACTCAAAAGATGCACTCTCGCACAAAATGATTCTCTTGTGTGTCACT
TAAACACAATGACTTGGAGCGAAGAAGGGTAGAAAAGCCTACTAAGCAAC
ATGAAGTGGAAGCGAAGAACTTGGAGCGGGAGGCATTGAGCTCACGGATA
GCGTCTGGCAATGCATGGTCATAGGAACGAGCCGGTTTCCTAAACAAGCA
CGCACATACGACCTTGTAATAATGGTGTCGATGACATATTGCGAAAATGC
CAATACTGATAATACTGATAGAAGAGGGCGCAGGTTTTTAAGGCTGGCAA
CCTCCCAACACAGCATCAGGACCAAAAAAATGCGTGCTCAAAAGGAAATG
AGGTCAATTGTTGCGCTTATTGCGATATGATGTTTGTGTGACCAGCGTAT
GGGTATCAAAATAAGCCACGGCTGAACAAAAGCTTGTAAATGATGGAGGA
GTTCGTCTTTATCGTCCCGAGGCCATTTCCATATAGTGGAATATCCTCAT
ATCCTTTCTCTACATCGATCGAGTATTTCCTTTGAACACGTGTATAATCT
AAAGATGAAGCATGCTCACCTCTGATGCTAATGATAGTCGTGATATTTGC
CTTCGTTTCCAATCTCGTACGAAATTCAAATTGG
back to top

Coding sequence (CDS) from alignment at CM002466.1:411952..412635-

>rna5614 ID=rna5614|Name=rna5614|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002466.1:411952..412635- (Nannochloropsis gaditana)
ATGGTCATAGGAACGAGCCGGTTTCCTAAACAAGCACGCACATACGACCT
TGTAATAATGGTGTCGATGACATATTGCGAAAATGCCAATACTGATAATA
CTGATAGAAGAGGGCGCAGGTTTTTAAGGCTGGCAACCTCCCAACACAGC
ATCAGGACCAAAAAAATGCGTGCTCAAAAGGAAATGAGGTCAATTGTTGC
GCTTATTGCGATATGA
back to top
Synonyms
Publications