rna559, rna559 (mRNA) Nannochloropsis gaditana

Overview
Namerna559
Unique Namerna559
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length252
Alignment locationCM002455.1:1385856..1386125 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100878g3.371.mrna
Orig protein idgnl|cribi|Naga_100878g3.371
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1385856..1386125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100878g3gene538Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna559rna559-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30114.1cds559Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna559 ID=rna559|Name=rna559|organism=Nannochloropsis gaditana|type=mRNA|length=252bp
ATGATCCAATACAGCAAGTGCTTGGCTTCAACCCCTTTCTCGGACTTTGA
ATTTGACGCCCACCACTCATATCTCGGCCAGCTATGTGCAACATCCTTAG
TTCTCGATCGCCTGCCGACACGAGCCGAGTTTGAGGAAATTCCGATGAAG
TCCTATCTTCGTGACGTCCCGAAACTGATATGGAAAAACATCCCCAGTTC
AGTAAGAAGATGGATTGGACCATATAGCTCATGTGATACTGCAAGGAAGT
AA
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protein sequence of rna559

>rna559-protein ID=rna559-protein|Name=rna559|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MVSSASRHESFLWASCYMGLPAANGFQCHEEAHAYRLRDSLETRLLALAS
RLDPSLKTRKEPGRPACCAHLGPTHSGHASKSAERRPLD
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mRNA from alignment at CM002455.1:1385856..1386125+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna559 ID=rna559|Name=rna559|organism=Nannochloropsis gaditana|type=mRNA|length=270bp|location=Sequence derived from alignment at CM002455.1:1385856..1386125+ (Nannochloropsis gaditana)
ATGGTTTCCAGCGCATCAAGACACGAGTCCTTCCTCTGGGCCTCGTGCTA
CATGGGCTTGCCGGCCGCAAACGGCTTCCAATGTCATGAAGAAGCGCATG
CTTACCGACTGCGAGATAGCCTCGAGACGCGGTTACTGGCCCTAGCTTCA
CGACTCGATCCTTCATTGAAGACACGCAAAGAGCCAGGACGACCTGCCTG
TTGTGCTCACTTGGGTCCCACCCACTCAGGACACGCGTCGAAGTCAGCAG
AGAGGAGGCCCCTGGATTAG
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Coding sequence (CDS) from alignment at CM002455.1:1385856..1386125+

>rna559 ID=rna559|Name=rna559|organism=Nannochloropsis gaditana|type=CDS|length=270bp|location=Sequence derived from alignment at CM002455.1:1385856..1386125+ (Nannochloropsis gaditana)
ATGGTTTCCAGCGCATCAAGACACGAGTCCTTCCTCTGGGCCTCGTGCTA
CATGGGCTTGCCGGCCGCAAACGGCTTCCAATGTCATGAAGAAGCGCATG
CTTACCGACTGCGAGATAGCCTCGAGACGCGGTTACTGGCCCTAGCTTCA
CGACTCGATCCTTCATTGAAGACACGCAAAGAGCCAGGACGACCTGCCTG
TTGTGCTCACTTGGGTCCCACCCACTCAGGACACGCGTCGAAGTCAGCAG
AGAGGAGGCCCCTGGATTAG
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Synonyms
Publications