|
|
Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF726 |
| Orig transcript id | gnl|cribi|Naga_100016g20.2895.mrna |
| Orig protein id | gnl|cribi|Naga_100016g20.2895 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:345991..349016 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5586 ID=rna5586|Name=rna5586|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp
CACACCACGATAACGCCCGTCTCGGACCACACCGCATTCATGGCCTCCAT
CACACGAGGAACAGTCAAAATAGTACTTGAGAAACTACGTTCGGTGCTCA
CGCGGCGCCGCCTGCTGGGAAAGAGCACACGCCCGCGCTAGATCTTGCAG
GTGGCCTTGCCCTTGAGCTCGCTGCCTGATCGTCGGGGTCACCCGGGTCG
GACATCCCGCTTTGGAAGCTTTCCAGTCCCTACTGCCACCAGGGGGCGAC
CCTCTCTGCTTTGCGCCATCCATGTCATCGACTTCGACGATTTCGTATGG
TAGGGTGTCTGGACTCAGCCTGGTTCACGCCCTTCTGTACCTTTGAACAG
TCGAGGAGCCATGAGGGCGTCTCCACCTTTATCCCTCTTGCTGGTCTTGC
TGACCGCGACAGACGCCTTTTTCATGGGCAGAATTGCGAGTACTTTGCAT
GGAGCACCTAAGTGTTCTTATTACACTAAAGCGATCGCCAGACGCATGGC
CGTGACGATGGAGGGAGAAGTGGCTGATATACAGAAGGAGGCTGAAATCA
AGATGAAGAAGAGCGTGGATTCAACCGATAACAACCTCAAGGGCATTCGC
ACCGGTCGGGCATCTGTCACCCTCCTTGACCGAGTGATGGTCGACTACTT
CGGCTCCCCGACGCCCTTAAATCAGCTTGCCGGTGTCTCTGTCTCGGGCC
CGCAGTCTTTGGTGGTCTCTCCTTACGACAAATGCGCCTTCAAGCTAATC
GAAACCGCCATCCTAGAATCAAGTCTGGGTCTCAATCCGAACAACGAGGG
AAGCGTTTTGCGCTTGAACATTCCCCCCCTCACGGAGGACAGGAGGAAGG
AGCTGAGCAAGATGGCCAAGGGCCTGGCGGAGGAGGGGAAAGTGGCCGTG
CGGAACGTGCGACGGGACGCCGTGGAGAGAGTGAAGAAGTTGGAGAAGGA
CAAAACCATCGGGAAGGACGAGAGCGCTAATGGGCAGGAGGCGCTGCAGA
AGCTGACTGATAAGTATGGGAAGCAACTTGATGAGATGCTCAAGTCGAAG
GAGAAAGAGATCATGACTGTCTAGCCAGAAAAAGAACGCGGTGGGAAGGA
TGTGTGGAAGCTCGTAGTTTAATGGCTTAAAAGCCTGACCAACATAGCAA
CATCATCCGCGGCGATAGCCCTCATGCTTCTTCCTACCTCAATATCTCAT
TTGCCCGTCCCCCCCACGGCAAGCAATGCCTCCCAGCCAAAATCTGTGAT
CCCATCGATGTTCCAAATGTCCTCCAATTTTCTATTTTCAACTCAGAGTC
CATCTTCTGACAAATGCTCATCGATCGTCCCCGGCGCCTGAGACCCTCCG
GGTCCATCCTGGCTCTCCGCCGCCTTTCCTCGCCCTTCACCCACAATCGG
GGCACCCCATGT back to topprotein sequence of rna5586 >rna5586-protein ID=rna5586-protein|Name=rna5586|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp
MMEVSGLTKLHLDVAEGPTPPSMGTRPQSNEIFFASTRSSSREGRPLPGF
PSTTGGRRLKESSTRIIYLLALLAIESHGPFLQDTHLAKDAGQASRRRQC
KEKAQLQTARRERLFRYVDSLSDVLALDDDTTLRAMVTAACQDGGLVSLQ
QSCSEADAEEDCYVLVQTVPELVEDLVREVGASCPSPLDSAWLSLVVKVL
ITYQVRAHLYDARARASFRRLSQRLGPDLLPWSEVVAIESALAFECSSLL
ANAGADPPRCQSLARYAKVACAALGGGALMLYTGSVAAPSIAASLVALCT
AGGMGLGPAAAAITQQLTSSTATLLSYWGLTSDLCISSFLAVTGVGLTGY
KMTQRTRGLTEFHFVPLHSSFPLHKRDGEAHASKRGTEECQQAPRDDNGA
AASSFRGSPGLPVFICVPGWVEHDQDPRRVWGGDMTTVSTVSREAGGGRG
KDTGGRGGEAEAGSRERKEAAGGGGESEEEGASMGKSVSSDGSLGSWEAL
EVESNGWWREVVPGGEEHVLIWETALLGQLHRAMREFVWHEASRYAIDEV
IKHTALAGLTSAAALPISVLTAAQKLDSPWQLAVLHAQEAGVLLANLLAL
RPQGSRPVTLMGFSMGARVIFHCLEALASKGEAGLGIVENAVLLGLPMGR
ASERWRQALAVVAGRLVNGYSTRDWVLQFLFRSKAWELGLAGLGPVEVVG
EGERRVENLDLSELVPGHLSYPKALPNIMALLRLEG back to topmRNA from alignment at CM002466.1:345991..349016+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5586 ID=rna5586|Name=rna5586|organism=Nannochloropsis gaditana|type=mRNA|length=3026bp|location=Sequence derived from alignment at CM002466.1:345991..349016+ (Nannochloropsis gaditana)
AGCACCGAACGTAGTTTCTCAAGTACTATTTTGACTGTTCCTCGTGTGAT
GGAGGCCATGAATGCGGTGTGGTCCGAGACGGGCGTTATCGTGGTGTGCT
CAATCTGCCGcgcccatcttctcctcttccatgccATATGTCAAGCAAAG
ACCACGATGTAATCCTTAGATTTCCGGTGTATCCATACTCATCGACCCAC
TTCCTTTGCGATAGGAACCTTGCCCCCGCGCCTACGTGTGCGATTTATCT
GAATCGCGACTCGGGTTAGCAGGGGCGGGCTGAGTTCTCTTGGCGTTCGC
CTCTTCATGATGGAGGTGTCAGGCCTGACAAAGCTGCATTTAGATGTGGC
GGAGGGCCCGACCCCCCCAAGCATGGGCACACGTCCCCAATCTAACGAGA
TATTTTTCGCATCTACACGGTCAAGCTCCCGGGAGGGACGCCCCTTGCCG
GGCTTTCCGTCCACGACGGGAGGGCGCCGGCTCAAGGAATCATCCACGCG
TATCATCTACCTTTTGGCGCTACTCGCCATTGAAAGCCATGGCCCCTTCC
TACAGGACACACACCTCGCCAAAGACGCTGGACAGGCGTCGCGTCGACGC
CAGTGTAAGGAGAAAGCACAGCTGCAGACCGCGCGTCGCGAGAGGCTCTT
TCGCTATGTAGACTCCCTGTCGGACGTGCTGGCCCTGGACGACGACACGA
CCCTCCGGGCCATGGTGACGGCGGCCTGCCAGGACGGGGGCTTGGTCTCA
CTGCAGCAATCCTGTTCCGAGGccgatgcggaggaggattgcTACGTGCT
GGTCCAGACGGTGCCCGAGCtcgtggaggacctggtgagggaggtgggcg
cGAGttgtccctctcccttggaCTCGGCCTGGCTGTCTCTCGTCGTGAAA
GTCCTCATCACCTACCAAGTCCGTGCCCACCTCTATgacgcccgcgcccg
cgCCAGCTTCCGCCGGCTCTCGCAGCGACTCGGTCCCGATCTGTTGCCGT
GgtcggaggtggtggcgataGAGAGCGCCCTGGCGTTCGAGTGCTCCTCC
CTTTTGGCCAACGCCGGCGCCGACCCTCCTCGCTGCCAGAGTCTTGCACG
CTACGCCAAAGTTGCGTGCGCCGCcctggggggcggggcgctGATGCTGT
ACACAGGCTCCGTGGCAgcgccctccatcgccgcgtCCCTGGTGGCTCTC
TgcacggcgggagggatggggctCGGGCCTGCCGCGGCCGCAATCACGCA
GCAGCTGACCAGCAGCACGGCCACTTTGCTGTCGTACTGGGGCCTGACAT
CGGACCTgtgcatctcctccttcctggccgtGACGGGGGTGGGCCTCACT
GGCTACAAAATGACACAACGCACGCGGGGCCTAACCGAGTTCCACTTCGt
gcccctccattcctccttccctttgcacAAGCGCGACGGGGAGGCACACG
CCTCTAAGCGGGGCACCGAGGAGTGTCAGCAGGCGCCGAGAGACGACAAC
GGGGccgctgcctcttccttccgcgGCTCGCCTGGTCTCCCTGTCTTCAT
TTGCGTGCCCGGATGGGTAGAGCACGACCAGGACCCCCGCCGGGTCTGGG
GAGGGGATATGACTACGGTGTCCACCGTCTCacgagaggcggggggcggt
cGCGGGAAGGAcacaggcgggaggggcggggaggcggaggctgggtcgag
ggaaaggaaggaggccgcaggggggggcggggagtcggaggaggaggggg
cttcGATGGGGAAAAGCGTTTCGTCGGACGGGAGCTTGGGCAGCTgggag
gcgttggaggtGGAGTCGAATGGGTGGTGGCGAGAGGTGgtgccgggagg
ggaggagcacgtgCTGATCTGGGAGACCGCATTGCTGGGCCAGCTGCACC
GCGCCATGCGAGAGTTTGTTTGGCACGAGGCGTCTCGCTACGCCATCGAC
GAGGTGATCAAGCACACGGCTTTGGCGGGATTGACCTCTGCCGCCGCATT
GCCCATTTCCGTGCTGACCGCGGCCCAAAAACTGGACAGCCCCTGGCAGC
TGGCGGTGCTGCACGCACAAGAGGCCGGCGTACTGCTTGCCAACCTTTTG
GCCTTACGACCCCAAGGGTCGCGCCCGGTGACCCTCATGGGCTTCTCCAT
GGGCGCACGCGTCATTTTCCACTgcctggaggccctggcgagcaaggggg
aagcgggcttGGGCATAGTCGAGAATGCGGTCTTGCTGGGTTTGCCAATG
GGTCGGGCGTCGGAGAGGTGGCGGCAGgcgctggcggtggtggcggggag
gctGGTGAACGGGTACTCGACCAGGGACTGGGTGTTGCAgttcctcttcc
gctccaAAGCCTGGGAGCTGGGTCTGGCGGGGCTGGggccggtggaggtg
gtgggcgagggcgagcggCGGGTCGAGAATCTGGACTTGAGTGAGCTGGT
GCCCGGACATTTATCTTACCCAAAGGCCCTTCCCAACATCATGGCTCTCT
TGCGCTTGGAGGGGTAGAAACGGGGGGCTTACCGGCGGAGACGATGCGGT
GGGAGTCGGAaaagggcggtggaggtgcgtCTACACATGTGGACAGGAGT
AATCATTGTACATGCGTAAGCGTGAGTTTGAAGTATTGCACTGTTGCCGG
CCTGCTCCATCTCAGTGCAAGGTAGCGAAGCGCTGGATTCCGGTGAGGTG
CTGAGGCGCAGATTTTGTCCTGTGGCCTTTGCATGATGCTTCTCAGGTGG
TGAGACGTCATTCGGTCTCAGGTCTGTGTGCAAGGGAACGGGGCAGCTTG
AAATGATGTAAATTTGTTGGTACGGGAGGTGGTGTGGAAATGTATGCAGC
AGCGGGTTGTTGACAACAGATGGAGCGGAGGGTCTCTCATCAGGCGCCCA
GCGGTTGACTGATACCGAGACGATCATCCGGGGAGAGTTGTATATCGGAA
GAGGAGCTTCAGGGAAGTATAGGCAGCCTGATAATGCACCcgtaaaaaaa
gaaaaatccATGGAAGCGCTTTCACA back to topCoding sequence (CDS) from alignment at CM002466.1:345991..349016+ >rna5586 ID=rna5586|Name=rna5586|organism=Nannochloropsis gaditana|type=CDS|length=2211bp|location=Sequence derived from alignment at CM002466.1:345991..349016+ (Nannochloropsis gaditana)
ATGATGGAGGTGTCAGGCCTGACAAAGCTGCATTTAGATGTGGCGGAGGG
CCCGACCCCCCCAAGCATGGGCACACGTCCCCAATCTAACGAGATATTTT
TCGCATCTACACGGTCAAGCTCCCGGGAGGGACGCCCCTTGCCGGGCTTT
CCGTCCACGACGGGAGGGCGCCGGCTCAAGGAATCATCCACGCGTATCAT
CTACCTTTTGGCGCTACTCGCCATTGAAAGCCATGGCCCCTTCCTACAGG
ACACACACCTCGCCAAAGACGCTGGACAGGCGTCGCGTCGACGCCAGTGT
AAGGAGAAAGCACAGCTGCAGACCGCGCGTCGCGAGAGGCTCTTTCGCTA
TGTAGACTCCCTGTCGGACGTGCTGGCCCTGGACGACGACACGACCCTCC
GGGCCATGGTGACGGCGGCCTGCCAGGACGGGGGCTTGGTCTCACTGCAG
CAATCCTGTTCCGAGGccgatgcggaggaggattgcTACGTGCTGGTCCA
GACGGTGCCCGAGCtcgtggaggacctggtgagggaggtgggcgcGAGtt
gtccctctcccttggaCTCGGCCTGGCTGTCTCTCGTCGTGAAAGTCCTC
ATCACCTACCAAGTCCGTGCCCACCTCTATgacgcccgcgcccgcgCCAG
CTTCCGCCGGCTCTCGCAGCGACTCGGTCCCGATCTGTTGCCGTGgtcgg
aggtggtggcgataGAGAGCGCCCTGGCGTTCGAGTGCTCCTCCCTTTTG
GCCAACGCCGGCGCCGACCCTCCTCGCTGCCAGAGTCTTGCACGCTACGC
CAAAGTTGCGTGCGCCGCcctggggggcggggcgctGATGCTGTACACAG
GCTCCGTGGCAgcgccctccatcgccgcgtCCCTGGTGGCTCTCTgcacg
gcgggagggatggggctCGGGCCTGCCGCGGCCGCAATCACGCAGCAGCT
GACCAGCAGCACGGCCACTTTGCTGTCGTACTGGGGCCTGACATCGGACC
TgtgcatctcctccttcctggccgtGACGGGGGTGGGCCTCACTGGCTAC
AAAATGACACAACGCACGCGGGGCCTAACCGAGTTCCACTTCGtgcccct
ccattcctccttccctttgcacAAGCGCGACGGGGAGGCACACGCCTCTA
AGCGGGGCACCGAGGAGTGTCAGCAGGCGCCGAGAGACGACAACGGGGcc
gctgcctcttccttccgcgGCTCGCCTGGTCTCCCTGTCTTCATTTGCGT
GCCCGGATGGGTAGAGCACGACCAGGACCCCCGCCGGGTCTGGGGAGGGG
ATATGACTACGGTGTCCACCGTCTCacgagaggcggggggcggtcGCGGG
AAGGAcacaggcgggaggggcggggaggcggaggctgggtcgagggaaag
gaaggaggccgcaggggggggcggggagtcggaggaggagggggcttcGA
TGGGGAAAAGCGTTTCGTCGGACGGGAGCTTGGGCAGCTgggaggcgttg
gaggtGGAGTCGAATGGGTGGTGGCGAGAGGTGgtgccgggaggggagga
gcacgtgCTGATCTGGGAGACCGCATTGCTGGGCCAGCTGCACCGCGCCA
TGCGAGAGTTTGTTTGGCACGAGGCGTCTCGCTACGCCATCGACGAGGTG
ATCAAGCACACGGCTTTGGCGGGATTGACCTCTGCCGCCGCATTGCCCAT
TTCCGTGCTGACCGCGGCCCAAAAACTGGACAGCCCCTGGCAGCTGGCGG
TGCTGCACGCACAAGAGGCCGGCGTACTGCTTGCCAACCTTTTGGCCTTA
CGACCCCAAGGGTCGCGCCCGGTGACCCTCATGGGCTTCTCCATGGGCGC
ACGCGTCATTTTCCACTgcctggaggccctggcgagcaagggggaagcgg
gcttGGGCATAGTCGAGAATGCGGTCTTGCTGGGTTTGCCAATGGGTCGG
GCGTCGGAGAGGTGGCGGCAGgcgctggcggtggtggcggggaggctGGT
GAACGGGTACTCGACCAGGGACTGGGTGTTGCAgttcctcttccgctcca
AAGCCTGGGAGCTGGGTCTGGCGGGGCTGGggccggtggaggtggtgggc
gagggcgagcggCGGGTCGAGAATCTGGACTTGAGTGAGCTGGTGCCCGG
ACATTTATCTTACCCAAAGGCCCTTCCCAACATCATGGCTCTCTTGCGCT
TGGAGGGGTAG back to top
|