rna558, rna558 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna558
Unique Name	rna558
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1453
Alignment location	CM002455.1:1385011..1385832 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100878g4.373.mrna
Orig protein id	gnl\|cribi\|Naga_100878g4.373
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1385011..1385832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100878g4	gene537	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna558	rna558-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30116.1	cds558	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1385011..1385832+
coding sequence from alignment at CM002455.1:1385011..1385832+

mRNA sequence

>rna558 ID=rna558|Name=rna558|organism=Nannochloropsis gaditana|type=mRNA|length=1453bp
CGAAAGCTCTGACATGTGGCAAGTGACTCGATCGTATGCTTAAGATATTT
CTGTTCCTTCTCCATACCATGCACTCTTGTAGCTTTCAGACACTCCGTCT
CACCTGGTCGCAATGATGTTCTCCTCGCGTGTGATGATACTTTTTGCGGC
GAGCCTGTTCCTGATGACTGTACCTGCCTCAGCCTTAAGCGGCCGCACCA
GCACCACTGCCCGCAAGGTCAACAATTTCAATTTTTGTGCTCGACCTTTC
TTGGATTCCTTGTCCTTCTGGCCCTCCAGCGACGTCCTTGAAGGCTTGGG
TAACGACACCTTCGCACTCCCCTATTTTTTCATTCCCTATTCCAAAGTCC
CCGACTTGGACATCTATGACTTGGGAGTCTTTGCAAACCTCATGAGCAGC
ACGTTCGGATTTTCTTCCAACATTGTGCCCTGCGCCAATGCTGCAGCTGG
AGACTTTAACAGCACCTCAATGGGCACTCTTGTAGGCTCGTGCGCTCCCA
TTCAAACGGACGTCAATGCCACTCAAATTATTGAGGCCTTACTGGATGGC
CCCCTTCGTCGTCTGCGAGAATTGGAGGTCCCACAAGAGAAAAAGCAGGC
GCACCGTCGCATCCAAGAAGAACTTCTCGATTACTTGACGACCGTCTGCT
ACTGCAGGTGGACGGCGGTTTTTACGGCCCCGAAAACCAAATGGGGAGAG
AACACGGGAATGTCGGGAGTCTCTATCCGCTCCTCTGTCGAAACTGTCGA
GGACTATGTGGAGACCAGCATGGGCAATCTCCGCAGCAACAAACCTATCC
TCCTCTCCTCTTCCGTTGAGGGACTAGGTGACGCGCCGGAGGCTGCCTTG
GAGACGGCGTACACGCAGTACACCGTGCAGTATTTCAAGAAGGGATGGAA
CCCGTTCTACAGCAAGTAAACTCTGGACATGTGTATCCTCTCACATTGGG
CTACTATCGCTATTCTTTCACGTAAATGGGTGTCAAAAGTACGATTGTCA
TAGCGTGGCGCCGCGCGGGGTGTGCTGCTCTCTCTGGAGACGTGTTGGCT
CTCGAAGTCATCACGTGCGTATCGGAAGGGTAGCTGTGCCCGCATTGTGT
GTGTCTTGGACGGTAAAGCATATGTAGTGATTGTTGGATGAGTAAGGTTT
GTGGTATCTAGCATGAAGACAGGACTTATCTCTCATCGGCATTCATGGAT
AATCGCTTCGTGTCGTGTCTGGGAGTGCTGTCGGTCTTCCAAGAGTAGAG
GTTATCAGCGGGCTATGGCCGCCTTGTGTGTGTCTTCTGAATGTTGTTCG
ATGGGTGAGTTTGTCGTATCTGGTAAGGTTTTTTTGGCCTGCATCCACAG
ATATAGACACCATGTCGTGCCTGGGACGATCGTTGGTCTCTTAGGAATGA
AGCATTTAGCAGCAAAGTAATCGTAGCTAACGTAATGAGGGAACCTCGTT
CTA

protein sequence of rna558

>rna558-protein ID=rna558-protein|Name=rna558|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MIQYSKCLASTPFSDFEFDAHHSYLGQLCATSLVLDRLPTRAEFEEIPMK
SYLRDVPKLIWKNIPSSVRRWIGPYSSCDTARK

mRNA from alignment at CM002455.1:1385011..1385832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna558 ID=rna558|Name=rna558|organism=Nannochloropsis gaditana|type=mRNA|length=822bp|location=Sequence derived from alignment at CM002455.1:1385011..1385832+ (Nannochloropsis gaditana)
ATGATCCAATACAGCAAGTGCTTGGGTAAGGCAGCCCATTCCGACTACAG
CTCCCAAAATTACACCGTTGATCGCTTTCGAGGACAGAACGGCAAACCAG
CTCGTAGTCTTTCCTCATTGCGACCACGACCACACAGGTACATGATCTCG
TCGACGTCTGATACAAATACGATGTCAAATGCAAGTGCAATATTCTTAAG
GACTCCCACAAGAAGCACAAACAAATCAACTCCAGAATACAACCATAATG
TTTTTCTCTCATTCCAGCCGTTGAAATGTAGAAAAAATCAGtttcttttt
ttaaattAAAAAACCCAAAAAATTCAACTCCGAAGCTTCAACCCCTTTCT
CGGACTTTGAATTTGACGCCCACCACTCATATCTCGGCCAGCTATGTGCA
ACATCCTTGTACGTATGATGTTAAAATGTCGATCAAAAAGTGGACATAAT
CGGTGGACAAAGTTCTCAAGTCAATGATTCATCTGTTTGTTCCGAACAAG
GATCAGGCACCCTGGGTCTTGTTCGTCAGACGTAGGCTTCGTCAGACGTT
GCCTGCTTGCTGCCGTTCGAGGGTCGAGTCCCGCCGGGGGGCTTAAGATG
TCTGACTGAGCAGCGCTGACAGGATAGCGTATGCAACTCTGACGGCAATA
CAAGACATTGACCGCCAGAGTTCTCGATCGCCTGCCGACACGAGCCGAGT
TTGAGGAAATTCCGATGAAGTCCTATCTTCGTGACGTCCCGAAACTGATA
TGGAAAAACATCCCCAGTTCAGTAAGAAGATGGATTGGACCATATAGCTC
ATGTGATACTGCAAGGAAGTAA

Coding sequence (CDS) from alignment at CM002455.1:1385011..1385832+

>rna558 ID=rna558|Name=rna558|organism=Nannochloropsis gaditana|type=CDS|length=756bp|location=Sequence derived from alignment at CM002455.1:1385011..1385832+ (Nannochloropsis gaditana)
ATGATCCAATACAGCAAGTGCTTGGCTTCAACCCCTTTCTCGGACTTTGA
ATTTGACGCCCACCACTCATATCTCGGCCAGCTATGTGCAACATCCTTAG
TTCTCGATCGCCTGCCGACACGAGCCGAGTTTGAGGAAATTCCGATGAAG
TCCTATCTTCGTGACGTCCCGAAACTGATATGGAAAAACATCCCCAGTTC
AGTAAGAAGATGGATTGGACCATATAGCTCATGTGATACTGCAAGGAAGT
AAATGATCCAATACAGCAAGTGCTTGGCTTCAACCCCTTTCTCGGACTTT
GAATTTGACGCCCACCACTCATATCTCGGCCAGCTATGTGCAACATCCTT
AGTTCTCGATCGCCTGCCGACACGAGCCGAGTTTGAGGAAATTCCGATGA
AGTCCTATCTTCGTGACGTCCCGAAACTGATATGGAAAAACATCCCCAGT
TCAGTAAGAAGATGGATTGGACCATATAGCTCATGTGATACTGCAAGGAA
GTAAATGATCCAATACAGCAAGTGCTTGGCTTCAACCCCTTTCTCGGACT
TTGAATTTGACGCCCACCACTCATATCTCGGCCAGCTATGTGCAACATCC
TTAGTTCTCGATCGCCTGCCGACACGAGCCGAGTTTGAGGAAATTCCGAT
GAAGTCCTATCTTCGTGACGTCCCGAAACTGATATGGAAAAACATCCCCA
GTTCAGTAAGAAGATGGATTGGACCATATAGCTCATGTGATACTGCAAGG
AAGTAA

Synonyms

Publications