rna5576, rna5576 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5576
Unique Name	rna5576
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2893
Alignment location	CM002466.1:322186..324713 +

Link to JBrowse

Properties


Property Name	Value
Product	pheophorbide a oxygenase
Orig transcript id	gnl\|cribi\|Naga_100016g32.2949.mrna
Orig protein id	gnl\|cribi\|Naga_100016g32.2949
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:322186..324713 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g32	gene5388	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5576	rna5576-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25140.1	cds5562	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:322186..324713+
coding sequence from alignment at CM002466.1:322186..324713+

mRNA sequence

>rna5576 ID=rna5576|Name=rna5576|organism=Nannochloropsis gaditana|type=mRNA|length=2893bp
AAGCCGGGAAATTGATTCGGGAAGTGGGCGATTCTAGTAATCCGCCCGGC
ACTCCACAGGGAGCATACCTTGTCTAGCCCGCTCATTGCTACCCTCCACA
CCGCAATACAGGATCATGGCGCTGAACATTGACCAGACCAAATTCCTGGA
GGAGGCGATGCGCAAGGTCAAGGAGCAAGCCTTCTACATGAAGCATGCCA
TGGACAATGAGGACTTGAAAGGGACGCTGACTCATGCGTCAGACATGTTG
CGGGAGCTTCGAACGGGCCTCCTGACTCCTAAAAGCTACTATGAGCTGTA
CATGAAGGTGTTGGATGAACTCCGTTACGTGGAGGACTACTTCACCGGTC
TGCAGAAGCAAGGGAAGCCGGTCGTCGAGCTCTATGAAAAGGTGCAGAGC
TGCGGGAATGTACTCCCGCGTCTCTATTTACTCATAACTGTCGCGGGTGT
CTATATCAAGTCTTTGGAAGCGCCGGCGCGCGACATTCTCAAAGATTTGG
TAGAGATGAGCAAGGGCGTGCAGCATCCCATGCGCGGCCTTTTTTTGCGA
AATTACCTCTCCCAGGTGAGCCGCGACAAGCTACCTGACGTGGGCACCCC
GTATGAAGGAGAAGAGGGCGGTAGTGTGCAGGACGCATACGAATTCATTC
TCCAGAACTTCTCGGAGGCAAACCGACTATGGTGCCGCATGCAGCAGCAG
CCGACCAACGCGCACAACAAGGACAAGAAGCGACGGGAAAAGGAGAGGCA
AGAGTTGCGGATACTGGTGGGAACCAATCTGGTCCGCCTCAGTCAGCTCC
AGGGCGTGGAGGCGGCCACCTACAAGGAGCACATCCTCCCGCGCCTCCTG
GAGCAGGTGGTGCAGTGCAAGGACACCCTTGCCCAGTCCTATCTGATGGA
GTGCATCGTCCAGGTCTTCGGCGACGAGTTCCACATCGCCACGCTCGACC
TCTTCCTGGCCGCGTGCACGCAGCTGAAGGAGAAGGTGAATGTGCGGGCC
ATTTTGGAGGGCGTAATGGACCGGCTGGCGACCTTTGCTGAGGCCAACCC
CGCCGCCATCCCCCCCCACCTCCGGACTTTCGACATGTTCAACACCTGCG
TGAGCAAGCTCCTGGAGGAGCGTCCGGGCTATTCGGTGGTAGAGGTGCTG
CGCCTTCAGGCCTCCCTCCTCAACTACGCCCTTCATTCCTTCCCCGGCAA
CCTCGAGTACCTGAACCTAGCTCTCGGGAATTGCGCCACGGCCCTGGCAG
ACAAACGGGCGGCCCATCAGGAGCAAGCCGTCATCGTGGCGCCCTTGCCC
TTTGCCCTGGACAGCGAAGGCGTGGAGGTCGTGGAGCGCCTCCTCACTCT
CCCCTTGGCCTGTCTGGCGCTGAAGGTGCTGGAGCTGCCACACTTCGCCT
CCCTCCTCGAGTTCCTCCCATGGGCGAGCCGGCGCCAGGTGGGCGTGACA
CTCCTCCAGGCTGTGTACAACTCCCGGGCAAAGCTGAGCGACCTGGAGAG
CGTGGAAAAGCTGCTGGAGATGGTGGTGCCTGTGATCAAGGAGGAGCCCT
CCTCGGTGCTGGGCTCCGAGGAGGGCCAGGCTCTGCGGCGGCAGCAGAAC
GGGGAGGGAGGGGTGGAGGACGCAGAGGAGGAGGACGAAGCCGGCGCTTC
CCGGTCGCGGGGGGGGGGGTCCACAGGGAGCACAGAGAACGGGAAGGCAC
GGAGGCTGGAGGAGGAGCAGCTCCTGCTCGGGCGCCTGGTGCATGTGATG
GCGAGCCCGGACACGGATATGCATTTCAGGTTCCTGACGGTGGCGCGCCG
GCACTTCAGCGAGGCGCCCAAGGACCGGTTCCAGTACACGTTTCCACCCT
TGGTCCTGGCGACCTTGCAGCTGGTGCAGCGGGTGCGAAGACGAGAGGTG
GCGGCTGAGGGCGCGGACGGCAAGCAGGAGGGAGACACGCAGGGGGGCCG
CGCGGCCTCGGAGGGTGCCTCCGAGCAGGCGGCCGCGGAGGATGGCAACG
GGGTGCTGGGGTTGAAGAAGAGAGACGTGCCGGGCGTGCAATTTGGCTGC
CGGAAGCTCTTCCAAGCCGTGCACGAGATGCTCACCTCCTTGGCCCCGCA
TTTTGCAAACCTTGCGCTGAAACTTTTCTTGGAGGCCGCGCAGGCCGCCG
ATCGATGCGAGGCAGACGCCTTCAAACTCATCTCGTACGAATTCGTGACC
CAGGCCTTCTTGCTGTACGAGGACGAGGTCACGGACTCTAAGTCCCAAAT
ACGGGCCCTGACCGCCATGATTGGCACGCTCCTGCAGGCCCGCCACTTCG
ACGAGAGCGACTACGATGCTTTGAGCACCAAGGTCACACAGTACGCAGCC
AAACTCCTCAAGAAGCCCGATCAGTGCCGCATGGTAGCCTTGGCCTCCCA
TCTCTTCTTCGTCGGTCGTGCCGACGAGCCTGGCCATTACCACGACCCCA
AGCGTGTCATTGAGTGCCTACAGCGCTCTGTCAAAACCGCCGACATGTGC
ATGGCCTCATCCCAGCATATGCACCTATTTGTAGAGGTCCTGAACCACTA
CTTATACTTTTACGAATGCGGTTGCCCTACTGTAACAGAAAAGTACCTGT
CAGCTCTAGTGGCCTTCATAAACGACAAGCGGAACGAGGCGGCTCTTGTG
GGCGGGGGGCCGGCGGAAGGAAGCTCACGCGCCGCTGAGATAGAAGCATA
CTATAAAAATACGCTTGACTATATCCGCTTGAAAAAGACTCAAACGGATA
ACAAAGAGCTGGCAGACAGGTTTTCCGCTATCCAAGTGTAATCATGAAAA
GGAGATAAGAAGTTGCCTGTCATCCCCGGGATGTGGGAAGGTTTTTGCCG
CTTGTGTAAAGGAATGACCCGAACGCATGTGAAAAAATGAGCT

protein sequence of rna5576

>rna5576-protein ID=rna5576-protein|Name=rna5576|organism=Nannochloropsis gaditana|type=polypeptide|length=562bp
MKSIYSKVPKASRLYCLVAVLFLSHHAHSFALSSQPTKWPFNPPHDAQVK
VYAVSESSMVNTYKSIDWQAQWWPIAFESVTDKTRPYPFELLSIPIVIWW
DNNGKRWNAVKDACPHRLAPLSEGRIDPSTGCIECPYHGWTFEGKLGKCT
RIPQLEDGEVPPEARTAATVAAYPTTVAQGIIWVWGQSLQSLCGRTPSVD
LIPLCPPLVDEDLICLDVSRDVPYSYEQAKENLLDPSHVPFTHHATIGRR
SYASPVPLKLTSEVTLAGFRGTWERNIPASPMTKKHLGRVERETLFNAPS
YMHHLISTPEVSTWTVTYATPSRPGQCRILARFPFKFPDPVTDTGSLGGF
NTTPPASPLRGRSWASRLRRAIFLSIPDWMQHLQQNRVLDDDNIFLAVQE
RRLLDPAGSSSASWVKRYYMPTKADLFVAQFRRWIDTYGKGGPFGALTAD
ALEELDYKTLPDVLLDRYHQHTRHCASCSRALACVRRWKPRILGAGLLIG
TLGKRLLDVKLTSNRSEVVVVALIGLLAFSWQQLSRIEGDLTRGPYPPPR
NAVESGRKHGNL

mRNA from alignment at CM002466.1:322186..324713+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5576 ID=rna5576|Name=rna5576|organism=Nannochloropsis gaditana|type=mRNA|length=2528bp|location=Sequence derived from alignment at CM002466.1:322186..324713+ (Nannochloropsis gaditana)
GCCATGCCGGGAGAGCTTGGTTGCATGCCGTATTGAAAGACGCACAGGCC
TCCAGAACTCGATCAGGCTCTGAGGAGATTACCTGTCGAATGACGAGTGC
GCCATTTTCAAGCAGGCATGTTTTGGTTCATCTCTCGCAGCACTTTGGAC
GTAAGGAGGGGTTTAACCTCCCCGATGCCCTGCGCGTCCCAGGCACCCCT
CCGTCTAGCCCTATGCTCCACGCTGTTGATGATCTCCTCTATCTCCTTTT
CACGTTAGCGTTTTATCTCAAGGCTTCATTTTTCGGAATATAAAAATAAT
CGCCGTCTTCTGAAGGCAACCCTGTGTTCTCGAGAGGCAAATTCGCATCC
TCAGGTGTACTCTACGGGGTCACACCTGATCTAGACACCGGCATTTGTCA
ACGAAACACACTTCCAAGAGAAATAAACGGCCATGAAATCCATCTACTCC
AAGGTTCCGAAAGCATCTCGGCTATATTGCTTAGTTGCTGTGCTATTTTT
GTCCCATCACGCGCACTCATTCGCCTTATCTTCGCAACCGACTAAGTGGC
CCTTTAATCCGCCGCACGATGCACAAGTAAAAGTATATGCAGTTTCTGAG
TCAAGTATGGTAAATACATACAAATCGATTGACTGGCAGGCCCAATGGTG
GCCAATCGCCTTCGAGTCAGTGACAGACAAAACGAGGCCTTATCCTTTCG
AGCTTCTGTCCATCCCAATTGTAATATGGTGGGACAACAATGGAAAGCGC
TGGAATGCGGTCAAAGATGCCTGTCCACATCGTCTTGCACCCCTTAGCGA
GGGACGTATTGATCCATCCACGGGATGCATCGAGTGCCCTTACCACGGAT
GGACGTTCGAAGGAAAGCTGGGCAAGTGCACTCGAATCCCGCAGCTGGAG
GACGGTGAGGTCCCTCCAGAAGCTCGGACGGCGGCGACTGTGGCAGCCTA
TCCTACAACGGTCGCTCAGGGTATCATATGGGTGTGGGGACAGTCATTGC
AGTCCTTATGCGGCCGTACGCCAAGCGTCGATCTCATCCCTTTGTGCCCC
CCGCTtgtggacgaggacctgATTTGCTTGGATGTGAGCCGTGACGTGCC
CTACTCGTATGAGCAAGCGAAAGAAAACCTCTTGGATCCATCCCACGTGC
CTTTCACGCACCATGCCACAATTGGCCGCCGTTCCTATGCGAGTCCTGTG
CCATTGAAGCTCACCTCTGAGGTGACCCTGGCAGGGTTCCGAGGGACCTG
GGAGCGCAACATCCCGGCGAGTCCCATGACCAAGAAGCACTTGGGGCGTG
TTGAGCGGGAAACCCTTTTCAACGCTCCTAGCTACATGCATCACCTCATA
TCCACCCCTGAGGTCTCCACGTGGACCGTCACGTACgccactccctcccg
tccaggACAATGCCGCATATTGGCGCGTTTTCCTTTCAAGTTTCCCGATC
CGGTCACTGACACGGGTAGCCTTGGTGGCTTTAATACTACACCACCTGCC
TCTCCGCTCAGAGGGAGGTCCTGGGCATCCAGGCTTCGGCGCGCCATCTT
CCTCAGCATTCCGGACTGGATGCAGCATCTCCAACAAAACCGGGTCTTGG
ATGACGACAATATTTTTCTGGCAGTGCAGGAGCGAAGATTACTTGACCCT
GCCGGCAGCAGTTCTGCTTCCTGGGTCAAGCGATACTACATGCCCACCAA
GGCTGACTTATTTGTAGCCCAGTTTCGGAGATGGATTGACACGTATGGCA
AAGGCGGTCCTTTCGGTGCTCTAACCGCGGATGCTCTTGAGGAGCTTGAT
TATAAGACACTTCCTGACGTACTCCTTGATCGATACCATCAGCATACCCG
ACACTGCGCGTCCTGCAGCCGAGCGCTTGCTTGTGTACGACGGTGGAAGC
CGCGAATTTTGGGGGCAGGTTTACTAATAGGAACCCTAGGGAAACGATTA
CTGGACGTGAAGCTAACTTCGAATAGGAgtgaggtggtggtggttgcGCT
CATAGGCCTGTTGGCTTTCTCGTGGCAACAGTTGTCTAGGATAGAAGGCG
ATCTGACAAGAGGGCcttatccccccccccgaaatGCTGTTGAAAGTGGA
AGAAAGCATGGCAATCTGTAGTGCTGGTCCGCCGTATTCCACGCTAATAC
GACTCGCATCGTTGCTCAAATATGAAGGCTTCTTCTCATGATTTGAATTG
AAGTACCGTGCAACGTACTACATACTTACAAAATTGATTTTGGTAGACAC
GGAATGTTCGATTGGATTTGTCATCATGAAAACTATGAATTCATAACGTC
AAACCATTCATGAAAAAATGCCATGGAACATATGACATCGTTCCCTTCAC
ACGCTGAACCGTTAAATTCAAACAACCATATGCAATGCATCTATAGGCGT
ATAGTACGCGAGTGCAGCAAGGTGTGCTGCGCAAAGTATATCGATAAATT
GTAGACATTCCGACCAAATTATTGGTATGGCATTGAAAAGACGGATCTTG
TTTAAAACTAGCACAAATTCTATTCCTA

Coding sequence (CDS) from alignment at CM002466.1:322186..324713+

>rna5576 ID=rna5576|Name=rna5576|organism=Nannochloropsis gaditana|type=CDS|length=1689bp|location=Sequence derived from alignment at CM002466.1:322186..324713+ (Nannochloropsis gaditana)
ATGAAATCCATCTACTCCAAGGTTCCGAAAGCATCTCGGCTATATTGCTT
AGTTGCTGTGCTATTTTTGTCCCATCACGCGCACTCATTCGCCTTATCTT
CGCAACCGACTAAGTGGCCCTTTAATCCGCCGCACGATGCACAAGTAAAA
GTATATGCAGTTTCTGAGTCAAGTATGGTAAATACATACAAATCGATTGA
CTGGCAGGCCCAATGGTGGCCAATCGCCTTCGAGTCAGTGACAGACAAAA
CGAGGCCTTATCCTTTCGAGCTTCTGTCCATCCCAATTGTAATATGGTGG
GACAACAATGGAAAGCGCTGGAATGCGGTCAAAGATGCCTGTCCACATCG
TCTTGCACCCCTTAGCGAGGGACGTATTGATCCATCCACGGGATGCATCG
AGTGCCCTTACCACGGATGGACGTTCGAAGGAAAGCTGGGCAAGTGCACT
CGAATCCCGCAGCTGGAGGACGGTGAGGTCCCTCCAGAAGCTCGGACGGC
GGCGACTGTGGCAGCCTATCCTACAACGGTCGCTCAGGGTATCATATGGG
TGTGGGGACAGTCATTGCAGTCCTTATGCGGCCGTACGCCAAGCGTCGAT
CTCATCCCTTTGTGCCCCCCGCTtgtggacgaggacctgATTTGCTTGGA
TGTGAGCCGTGACGTGCCCTACTCGTATGAGCAAGCGAAAGAAAACCTCT
TGGATCCATCCCACGTGCCTTTCACGCACCATGCCACAATTGGCCGCCGT
TCCTATGCGAGTCCTGTGCCATTGAAGCTCACCTCTGAGGTGACCCTGGC
AGGGTTCCGAGGGACCTGGGAGCGCAACATCCCGGCGAGTCCCATGACCA
AGAAGCACTTGGGGCGTGTTGAGCGGGAAACCCTTTTCAACGCTCCTAGC
TACATGCATCACCTCATATCCACCCCTGAGGTCTCCACGTGGACCGTCAC
GTACgccactccctcccgtccaggACAATGCCGCATATTGGCGCGTTTTC
CTTTCAAGTTTCCCGATCCGGTCACTGACACGGGTAGCCTTGGTGGCTTT
AATACTACACCACCTGCCTCTCCGCTCAGAGGGAGGTCCTGGGCATCCAG
GCTTCGGCGCGCCATCTTCCTCAGCATTCCGGACTGGATGCAGCATCTCC
AACAAAACCGGGTCTTGGATGACGACAATATTTTTCTGGCAGTGCAGGAG
CGAAGATTACTTGACCCTGCCGGCAGCAGTTCTGCTTCCTGGGTCAAGCG
ATACTACATGCCCACCAAGGCTGACTTATTTGTAGCCCAGTTTCGGAGAT
GGATTGACACGTATGGCAAAGGCGGTCCTTTCGGTGCTCTAACCGCGGAT
GCTCTTGAGGAGCTTGATTATAAGACACTTCCTGACGTACTCCTTGATCG
ATACCATCAGCATACCCGACACTGCGCGTCCTGCAGCCGAGCGCTTGCTT
GTGTACGACGGTGGAAGCCGCGAATTTTGGGGGCAGGTTTACTAATAGGA
ACCCTAGGGAAACGATTACTGGACGTGAAGCTAACTTCGAATAGGAgtga
ggtggtggtggttgcGCTCATAGGCCTGTTGGCTTTCTCGTGGCAACAGT
TGTCTAGGATAGAAGGCGATCTGACAAGAGGGCcttatccccccccccga
aatGCTGTTGAAAGTGGAAGAAAGCATGGCAATCTGTAG

Synonyms

Publications