rna5568, rna5568 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5568
Unique Name	rna5568
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3619
Alignment location	CM002466.1:306673..308151 -

Link to JBrowse

Properties


Property Name	Value
Product	molybdopterin biosynthesis protein
Orig transcript id	gnl\|cribi\|Naga_100016g40.2928.mrna
Orig protein id	gnl\|cribi\|Naga_100016g40.2928
Gene	MoeB
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:306673..308151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MoeB	gene5381	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25119.1	cds5554	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5568	rna5568-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:306673..308151-
coding sequence from alignment at CM002466.1:306673..308151-

mRNA sequence

>rna5568 ID=rna5568|Name=rna5568|organism=Nannochloropsis gaditana|type=mRNA|length=3619bp
TGTATGTTTGGAGAAATAAGCAAACCGATAGAGTGGCTGATATTGAACGG
AATTTCAACGGATGCATCTTTTCCGCCCCATATCAGGCGGATTATTTGTG
TTGTGGCATGGACGACATCAACCCCTTTAAAGCTCAACGCAGGTTGGCTC
GCACGCCTCCGCCAAAACCGAAGGCCCATGCTCCTGTGGAAGCAATATCT
GCACTGGCGGCGCCTACAGCCCACCATGACAAATTAACCAAACCGTCGCA
AGCGCAACAACCAAAAGTGATGCGCTCGCCTGTACTAGCACGACCGCAGC
AGCCGAAAGTCATGAGGTCGCCTTTACCAGCACGATCGCAACAGCCGAAA
GTCATGCGTTCGCCGTCCGTGACCCCATGCGTCGAAGTTGATCACAGCGA
TTTCTCTTCAGTCCCCGTATCCGCGCTGTCCGTTGCGAGGCCAGCTGAAG
ATATTTGCTCTATTTCTGAGGATAAGTTGGCAGCGAAGGAGGTAGGGGCT
GCCGTGATGGCCACGTCCTCTACTCATAATGGTTCTTTGGCACGTAATGG
GTTTCAAATAATTTTGCGTGCGGAGGCACCGGCCGCAACAATGGCGCCCA
CCTTGGATCACGAGACGGGCGCCGAGAAATCGGCAAAATGCCTGGTATCC
ATAGAGACCTCCAGTGAGGACGTCAAAGAGGGCCCTTGCCTCGCGCCCAG
CCTGGGGGACAACGAAGCATCCCCTGTCGCCACTGATCTGGAGCTGATAG
ACCCGGCACATGAAGGCGAGAAGTCCTCCCCTCCCGCGGAGGATAAAGGA
GCAAGATCCCTAAATGCACAATTAGCACCTGACTGGCCTTACTCAGACTC
GGACCCTATCGCGGAAGCGTCGCAGAGAGTGCTTGCGTCTGGCACGGACA
AGGTTCTTGACAAGACTGTGAACAGCCCCGGGGGTGCTGCTCCCTCCTCC
CGGTCGCGCATCTCGGGCCAGAGCCCCCCGGCACAGCCCACGGGAGAGCA
AAACCCGTGCCAGGGGGGGGGCATGGACGCCTCCGAGCTCTGTGCCACTG
GCTCGGAGCGCAAGCTAGACCACGTGTCGGGAATTGTCGCACCTCCGCAT
TCCCTTACCAACTCCCAAAAGCATTCGCCGGCCTCTCTTCCGCCTCTTGC
TACATCTGCGCCCTCGCCCATTCCGAACCGCCCTGCCGAGAGCGCTTGCT
CGGCGACGACCCTCATAGCCAAGCTTCTGGCGTCGGCCTCTACGTCGAAC
AGTGCTCCCATCAAGAGGGGCGGGATACCTCCTGTCGCGTGTGAGGGAGA
GAAGGATCCTTTTCCAGTCGAAACGTACCTCGGGCGCGGGCAGATTCCAA
GTCAAGCAATCTCGCGTCCGGTGACCAACAAGTTGGCTTTCGATTTTCGC
ACTTTCACATCCAGCTTAAAGAAGGGCGCTTCCACCACAAACAGCGTGCC
TGGTGTTAATCAAGCTGTCTCCTCAGCGCTTGGAAGTGCCACCCAGGACC
TAGAGGCAGAAAGCGACGCCTGTCAGGCTACCCTGAGCAATATGGTCACG
TCTGAGGCTCAGAAATTAGACATTGATGCAAAATCTCATCACACAGCGCA
TCCTGCGGCCATAAATCCTGAATTGCACGGAGCACCGTCCAAAAAAGAAG
CGAAGACGGGGCAATCGGCCGTGACCGAGGCGAAAGCCAACCTCTCGCTG
CACGAAAAGGAGCTTCAAGCTGAATTGGCCGGATTACGCGATAGCCTGGC
GAAGCAAAAAGCCAATTCACAGCGCTTAATGGAGACCTGGAGCGATGCAC
AGCAAGCGCTCAAGGAATCAGGCGCCGAACTGTGCAACGTGCAGAGAGAG
CGACGGCGCCTCAGCGTCAATGTCAGCCGCCTGACGCGTGACCTTACATG
CACCAAGGAGCGAATCCCGCCCTTGATTGTCGAAAATAGAAAAGCGCGCA
GCGATGTATATCGTATTAAGTGCGAACAGCTGAAGGCACGGTGTCAGCTC
ACAGCCTCTGTCTGTGCTTTTGACCGCTTATGCGAGAGGGAGCGGTCCGT
GAAGATCAAATTGTTATACGAGGAGGCAACCTCCTATGGCGCGCGTTCCA
CCTACCTCCATGACTATAGCACCATGTGTGCTTTCGGGCGGAAAATCTCG
ATAAAGTCTTTCGAATTGATGGGCCGCGTGAAGGACGGTGTAAACAGAGT
AAAAAGTGCAATTCAGGCAGAGCGTGGGGAGCTGCAGAAACATGCTGAGA
AAATCGGAAAGGATGCAGCTCTGGCTTCGAAAGAATCCAAAACCGAAATA
ACCCGCTTGGCAAGGAACGAGGCAGATCAGCGAAAGGCCCTTCAGCGCCT
TGAGGAGGGGAAGAAAAAGGTGGAGAAACGACTGGACGAGGCTGAAAAAC
GCGCCAAGGAAGAGGTAAAGCGACTTGAGGACATGGTGTCTACGCGTGGG
AGTGAGATTAAAAAGCTTGAGGAAGAGCTTCGAAAACTTCGTCAGGAAGG
GGCCCCGGTTGCCTCACACTATGCGCGAGCCCCAAAAAAATCGGGGCTGG
CGAAATCTGGTCAGAAATCGGATGAGAATGAGCTTGTCGAGGACCAGGGG
AAAGAGAATCCACCTGTCAGGCGGAGATGCGGTAGGAAACGCTCCGGTGC
GACCAAACCTAGCCGACCAGGCACTGCCACTCCTCAAGCAAGATTGCGAC
GTAGGAATAAGGCAAGCAACGAAGATGTATTGTGTGATGGGCAGGACATG
GAACCCCCCGCCGGAAAGACATCGGAAGAGGCATCGACAGGGATCGAGGA
CGTGAATGGTGTGGAGGAACGCCTCCCCTTGCCCCATGTGCCACCACCGC
TTACGAAAGTGGACAACGCTCTACAAGAAAGAGCTCAACAGACGACTGCA
TTGCTAGGGGAGGTGGGCGAGGGCGCTTTGGAAGCACCTAGTTGCTTCCC
TGCTTGTGAGACCGACAAGACTCCCGCGACGACCAAGCGTGGCAGGCTGG
AGTTGCAGCCTGCTGACCAAGCCGAAGGGACTGAGGATCTCAATCTCGAC
TCTAAAAGACCATGCGTGGAAATAAAGATCAGCAATGCGCCCAAGGCGTC
AGCTGAGGAGAGCTGCATTCTTTCACCTGTACCTCCGAATAGACTTTTAA
GCCCTTCAACGTCTTTCGACAAGGAAGAGACGACTAAAGCACTTGAAGCG
AGAGATGCAAGACCACTAGCCGACTTGACAAAGAGCCACCTGAACAAAGA
GGGTGAGGCGCGTGGACCCACGTACGACGTCGCAATCCAGCCGACGACGG
ATGCGAGGCTTCTAGCTCCAACGCCCTTGTCACACACCGGGGCACCCTTA
ACTAAACCAGCAGGGCCCGTGATGGAATCCAGCCAGTCTAAACCTACTTT
GGGAGGCAAGAAGCTGTCCATTTTTTCCTCGTTCATCAATAAGAATGCCA
TACCTAAGTTGAAGAAACCATCCGCAAAATAAGCAGCGAGAAGCGATTGA
ATCATCACGGTCTCTGATTCATCCCCAATACCGGCATAAAGTAAAGAACG
TGAAGGAAAAAGCGTGGTAGACTACAGTATTAAGAAACGTCACTTCTAAA
AAGGAAAGATTCTTTTCTA

protein sequence of rna5568

>rna5568-protein ID=rna5568-protein|Name=rna5568|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MPIWTWMRLSTTCGVVVSVLSLGIDRKSIFCQGSRGLSSRGKSAFAFTPP
TAWRPSNLASISRNINKRWWKCLKLPKSIQMQLPSEFGSSSSGPATFGGT
VSQKLDLELEEIKRYSRHLILSQVGMEGQRTLKASSVFCVGAGGLGSPLL
LYLAAAGVGRLGIVDDDTVELSNLQRQVIHGQGTLGEAKVRSAERRIKDV
NPHVLVDVYEEKMTAENTLRILAPYDVVVDGTDNFPTRYLINDACVILGK
PLVYGAILRFEGQASVFNYRGGPTYRDLLPEPPAPGDVPSCAEGGVLGVL
PGVIGCIQATETLKLLTGIGKPLSGRILIYNALDMTFRECGLQRDPSAPK
ITSLIDYDCFCGDQKGNKQSEKENASMAEATGNSAFQRISVKEARRRLEE
DGWAPFVLDVRLPQEAEISKLPFSDLLCPHREVEKVAAQLPREQDILVYC
KVGGRSAQACEKLAALGFTNLVNLDGGVIAWAKEIDARLPTY

mRNA from alignment at CM002466.1:306673..308151-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5568 ID=rna5568|Name=rna5568|organism=Nannochloropsis gaditana|type=mRNA|length=1479bp|location=Sequence derived from alignment at CM002466.1:306673..308151- (Nannochloropsis gaditana)
ATGCCAATTTGGACGTGGATGCGTCTTTCTACAACCTGTGGCGTGGTTGT
AAGCGTTCTAAGCCTCGGTATTGACCGCAAAAGTATCTTCTGTCAAGGCT
CACGAGGCTTATCGTCCCGTGGAAAGTCTGCATTTGCTTTCACCCCCCCA
ACAGCGTGGAGGCCGTCAAATTTAGCTTCGATATCTAGAAACATAAATAA
AAGGTGGTGGAAGTGCTTGAAGTTGCCCAAATCCATCCAAATGCAGCTGC
CATCAGAGTTTGGGTCCTCGAGTTCTGGTCCCGCTACTTTTGGCGGCACT
GTCTCGCAAAAGCTTGATCTCGAATTAGAGGAGATTAAGCGCTATTCTCG
TCATCTTATTCTGTCCCAGGTAGGAATGGAAGGTCAACGGACGTTAAAGG
CCAGTTCTGTATTTTGCGTGGGCGCGGGCGGCTTAGGCTCTCCACTCCTG
CTGTACCTTGCCGCCGCAGGAGTGGGCCGTCTGGGCATCGTTGACGACGA
CACTGTAGAACTTTCAAATCTGCAGCGGCAAGTCATACACGGACAGGGCA
CTCTGGGGGAAGCTAAGGTGCGCTCCGCGGAGCGCCGAATCAAGGATGTA
AATCCCCACGTGCTGGTGGACGTGTACGAAGAGAAAATGACGGCGGAGAA
CACGCTTCGAATCCTGGCGCCCTATGACGTAGTGGTCGATGGGACGGACA
ATTTTCCGACAAGGTACTTGATCAATGATGCTTGTGTCATTCTCGGAAAG
CCACTCGTGTACGGGGCGATTCTTCGCTTCGAAGGCCAAGCCTCTGTCTT
CAACTACCGGGGGGGCCCGACCTATCGCGACCTTCTGCCCGAACCCCCCG
CTCCAGGGGACGTGCCTTCCTGCGCAGAGGGAGGGGTGCTGGGTGTGCTG
CCGGGTGTGATTGGTTGCATTCAAGCCACGGAAACGCTAAAGCTCCTAAC
GGGCATAGGGAAGCCTTTGTCAGGACGCATACTCATATACAATGCTCTGG
ACATGACCTTTCGCGAATGCGGCCTTCAACGGGATCCGAGTGCCCCTAAA
ATAACTTCTCTTATCGATTACGACTGCTTCTGTGGCGACCAAAAAGGGAA
CAAGCAGTCAGAGAAGGAAAACGCTTCAATGGCAGAAGCAACGGGAAATA
GTGCCTTCCAGCGTATCTCAGTCAAAGAGGCTCGGCGCAGGTTGGAGGAG
GATGGATGGGCGCCCTTCGTGCTTGATGTCCGATTGCCTCAAGAGGCGGA
GATCTCAAAGCTTCCTTTTAGTGATTTGCTATGTCCACACCGGGAGGTGG
AGAAAGTAGCGGCGCAGCTCCCACGGGAGCAAGACATTCTGGTGTACTGC
AAAGTCGGTGGTCGCTCGGCTCAAGCGTGCGAGAAGCTGGCGGCGCTTGG
ATTCACAAATCTTGTCAATTTGGATGGAGGGGTTATTGCATGGGCTAAGG
AGATAGATGCTCGCTTGCCAACATACTGA

Coding sequence (CDS) from alignment at CM002466.1:306673..308151-

>rna5568 ID=rna5568|Name=rna5568|organism=Nannochloropsis gaditana|type=CDS|length=1479bp|location=Sequence derived from alignment at CM002466.1:306673..308151- (Nannochloropsis gaditana)
ATGCCAATTTGGACGTGGATGCGTCTTTCTACAACCTGTGGCGTGGTTGT
AAGCGTTCTAAGCCTCGGTATTGACCGCAAAAGTATCTTCTGTCAAGGCT
CACGAGGCTTATCGTCCCGTGGAAAGTCTGCATTTGCTTTCACCCCCCCA
ACAGCGTGGAGGCCGTCAAATTTAGCTTCGATATCTAGAAACATAAATAA
AAGGTGGTGGAAGTGCTTGAAGTTGCCCAAATCCATCCAAATGCAGCTGC
CATCAGAGTTTGGGTCCTCGAGTTCTGGTCCCGCTACTTTTGGCGGCACT
GTCTCGCAAAAGCTTGATCTCGAATTAGAGGAGATTAAGCGCTATTCTCG
TCATCTTATTCTGTCCCAGGTAGGAATGGAAGGTCAACGGACGTTAAAGG
CCAGTTCTGTATTTTGCGTGGGCGCGGGCGGCTTAGGCTCTCCACTCCTG
CTGTACCTTGCCGCCGCAGGAGTGGGCCGTCTGGGCATCGTTGACGACGA
CACTGTAGAACTTTCAAATCTGCAGCGGCAAGTCATACACGGACAGGGCA
CTCTGGGGGAAGCTAAGGTGCGCTCCGCGGAGCGCCGAATCAAGGATGTA
AATCCCCACGTGCTGGTGGACGTGTACGAAGAGAAAATGACGGCGGAGAA
CACGCTTCGAATCCTGGCGCCCTATGACGTAGTGGTCGATGGGACGGACA
ATTTTCCGACAAGGTACTTGATCAATGATGCTTGTGTCATTCTCGGAAAG
CCACTCGTGTACGGGGCGATTCTTCGCTTCGAAGGCCAAGCCTCTGTCTT
CAACTACCGGGGGGGCCCGACCTATCGCGACCTTCTGCCCGAACCCCCCG
CTCCAGGGGACGTGCCTTCCTGCGCAGAGGGAGGGGTGCTGGGTGTGCTG
CCGGGTGTGATTGGTTGCATTCAAGCCACGGAAACGCTAAAGCTCCTAAC
GGGCATAGGGAAGCCTTTGTCAGGACGCATACTCATATACAATGCTCTGG
ACATGACCTTTCGCGAATGCGGCCTTCAACGGGATCCGAGTGCCCCTAAA
ATAACTTCTCTTATCGATTACGACTGCTTCTGTGGCGACCAAAAAGGGAA
CAAGCAGTCAGAGAAGGAAAACGCTTCAATGGCAGAAGCAACGGGAAATA
GTGCCTTCCAGCGTATCTCAGTCAAAGAGGCTCGGCGCAGGTTGGAGGAG
GATGGATGGGCGCCCTTCGTGCTTGATGTCCGATTGCCTCAAGAGGCGGA
GATCTCAAAGCTTCCTTTTAGTGATTTGCTATGTCCACACCGGGAGGTGG
AGAAAGTAGCGGCGCAGCTCCCACGGGAGCAAGACATTCTGGTGTACTGC
AAAGTCGGTGGTCGCTCGGCTCAAGCGTGCGAGAAGCTGGCGGCGCTTGG
ATTCACAAATCTTGTCAATTTGGATGGAGGGGTTATTGCATGGGCTAAGG
AGATAGATGCTCGCTTGCCAACATACTGA

Synonyms

Publications