rna5559, rna5559 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5559
Unique Name	rna5559
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2501
Alignment location	CM002466.1:286130..288209 -

Link to JBrowse

Properties


Property Name	Value
Product	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
Orig transcript id	gnl\|cribi\|Naga_100016g49.2957.mrna
Orig protein id	gnl\|cribi\|Naga_100016g49.2957
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:286130..288209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g49	gene5372	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25148.1	cds5545	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5559	rna5559-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:286130..288209-
coding sequence from alignment at CM002466.1:286130..288209-

mRNA sequence

>rna5559 ID=rna5559|Name=rna5559|organism=Nannochloropsis gaditana|type=mRNA|length=2501bp
GCTGCTAGCTAAGCGCGGTCTGGTATGTACCTTTCCACTTCAATGAGCCT
GGCTGCTGGGAGGGGGAGGTAACCAACCCCGTTTTTCTCGAAAAATGAAG
CACGAGTTGCCAATCTTTGTCAATACCACGATTCGCGGTTGTGGCAGCTG
CTGGCTTGTGTTTTCGTTCGGGATGCCCGCATTTGTGGACGCGCTCAGTC
CCCAAGCACCCGTACCTCACGATCCTTCTCGACCACATTCGCCCGTGCTC
GTTATGACAGGAGCGTCTCAACACTTAAAGTATCCGTGTTCGCGCACTCA
CAATCAATCGAAACGCAATATTTGAGGAGGGACGTCAGTGGTGGATTGGT
GTGGTTGGAGAAAAGGTGTCAGGTAGCCATGCCTCTCCTATGCCCTTGCT
CAGGGGAGAACAAAAAGGAAGTCATGAGAGACAAGGTGCATCAAGGCAGG
GAGGAAATAATAAGAACTAAACGGAGGCGACGTGGGCGGAGAAGAACCAT
GCTATCCTATACACTCGCCATAAATGTGGTCTTGAGCATGGTGGTGTTTG
GCCTCATGCTCGGCGGTTCAGCCTTCGTCATCCCCCGTTGCTCGATTCGA
GTTCGGCCGAGAATCGTCAGCGCAATGACAATGACGATGGCCGAAAATAG
AGCGCGGATTAGCAAGCAAAATTGCGCATTTCGAGAACATGACGTAGGTT
ATGAGGAAAGAAAAGGAAAGCGAAGCATCACGCAGCCTGCCAGACTGTCA
TCGGACACATCACACACACCGGATATAGCTATCACCATTGTGCACCATCT
CCGAAGCTATCTTCCTAAGGTGGCCTTGTTGATATTGAGTGGAGGCTGGA
TGGGCGTCAGTGGAGGAGGAATTCTCAACGGTCCAGGACCATTATACCCG
GCTCGCGCAGAAAATGAGCTAGCACAGTATGCGAAAGAGGGGAATAAGGT
CGGTGTCGACCCAAAATGTTTTGTACAAAAGTGCTCCTTGCCCACGCATG
ACTGTTTGAACAATCCCGATTGCCTGAAGGGCCTTTCCTGTCTGTCCAAG
TGCAAGGGCGAGGGGACGTGCTCGACGGCCTGTTTTGCCAAATACGGCAA
CCGCGTGCTGGACGACTTTCTGCACTGCGCGGTGGAGCAGCAGGACTGCG
TACACGTGCCACGGGATCGCTCTCGAGCCACCTGGACGGACCCCGACGCT
GTGGGCCTGGATAAGCGGAGCTCGCCCACCTTCGAGATCCGGTCTCTTAA
CGGCCGGTGGTACAAGGTCATGGGGATGGACGCGCGCTACGACTGCTTCG
ACTGCCAGGTGAACCACTTCACGCCCAAGCCAGGGGCGCCGAACATCATG
CTTGCCGATGTCTCCTTCCGCATGCCCCGCCCCCGCGCTCCCGGCTTCTG
GGAGAACCACGTGACAGAGGAGATGCTGGGGGACGGGCCCGGCGCCCGGC
GATCCATGCACTCGGTCGGCCGCATGTTTGGCCTCACATTTTGGGAGAAT
TGGTACGTGATCGGAGAGAATTCGCCGGAGGACGTGGGGCTGCCGGACTA
CAAGTTCGTTTTCTACACGGGCCACACCCTCCAAGGGAATTATGAGGGTG
CCTTCGTCTACGCCCGCACGCCCGAGCTTCCCCCGGAGCTAATGCCGGCT
GTCTCTCAAGTGGCGCGTGCCAACGGTCTCGACCCCTCCAAATTCTGCAA
AATCCGCAACACGTGCTTCAGGCCAGACAGCTCTTCCTTCGTTGCTGCCT
CATCCGTCAGGGAGTCGGCCGGAACAGCCCATAAGCCTGGGGCGCCACCC
TCCTCTTGGGCTGGGGTCAAAAGTTGGATCACGGCCCGCGCCCTCTGGTT
GCCGGAGCAGATCTCCCAGCTGGTGACCGCCATGAATCAGGAGCTGGGCG
ACTGGTTCGAGGACCCCACCACTACCAGCGACTGGCTCATCAAGCAGCAG
GAGCGAATGGTCATGGTCACGGACGAGGCTCCCACAGGCAGGGTCCAAGT
CATTGCCAGTCGGCCAGGGAGTGCCGCTGGCGATACGGATGGCAGCGCCA
AGACAGCTGGTCCTGCGCCTCCTGTGAACGCCGCAACGATCACTGCGTTC
ACGGCTCAGATGGAGAAAGGGCAAAGCAGCAGCACCGATAGAGGCGGGTT
TCTGCCGGCATTCATCGACATTTCGGCCGAGAAAATACCTCAATAGTATT
CCGCTGGCTGACCTTAGACTAGACTGGCCAATTGATGTGTGGATTGTCGT
GTGGCGCGTGTCCAGTATCGCTTTGACTGTTTTTTATAATTCGTAAACCC
TTTTTGACTCCATTGTCTATCGATTAGAGAGAATCCCCAACATCCAGCCC
GGGACTCCAAATAACTGAAGAACAACAATGACCATTTGTATGTAGAAGAC
AACTTAAGAATTGAATGCCGCACGACAAGTTTCATTCCGAAATTATGAAA
AGCACGCATCACGACGCCTGTGATAGTTATGCAGATCAAGAGCGCATGTT
C

protein sequence of rna5559

>rna5559-protein ID=rna5559-protein|Name=rna5559|organism=Nannochloropsis gaditana|type=polypeptide|length=529bp
MAPTKVQIKWNKQTFSEVPLDTTGTALTFKQHVYELTGVPVPRQKLMCKG
AWKLALKDDDDLSKLSIKDGAAVTLIGTADVVKEPVEKVVFVEDMAQADQ
AKTGAILPAGLRNLGNTCYLNSTLQCLRYVPELRQALNRYTGTGANEQPF
LTNALKDTFNLLDGNTEPVPPMQFVMLLRQQFPQFAQQSRGHFMQQDADE
FMNELLTSLAANLRDAYGLPSLEDAGNFVDALFGMEVEDTLSCAESEAEK
PVVKRDHVRKLVCNIQGGAGSDVKINYLHEGVKLALEGTIEKQSEVLGRD
AVWNKTTRIARLPRYLCVQFMRFFWKATPDSQDHAGVKCKSLRTVTFPET
LDMFDFCNKTLQDRLMITRGREVDDILGKDSKKKGDGLGGDGGDPEAKGE
ESSGNGSSEEEAALQAALAMSMADSADAAVPPAPCGPGLPMDFKGLYELF
GVVTHKGRTADGGHYMGWVRQKGDDWLVFDDEDVSECKTAEVLQLSGGGD
WHMAYLCFYRFKGTGGVADEKGSSREGKE

mRNA from alignment at CM002466.1:286130..288209-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5559 ID=rna5559|Name=rna5559|organism=Nannochloropsis gaditana|type=mRNA|length=2080bp|location=Sequence derived from alignment at CM002466.1:286130..288209- (Nannochloropsis gaditana)
CGAGAGCTGGTGTGAAGCCAGCAAAATGCATTTGATGCGCACCCACACGC
CTTCTTGGGGTCGCCAAGCCTGTAGGAGGATCGTTTCTGCACCATGGTGT
CAGCCGCACACTTTTTGATTCACTTGTGATGTCTCCATGGGTATCTACTA
ACGGAAAACTGATGACATCTTCAGGCGCGTCGGTGAGAGAATGGCACCCA
CTAAGGTGCAAATCAAGTGGAATAAGCAGACTTTCTCTGAAGTTCCGCTT
GACACAACGGGAACTGCGCTGACTTTCAAACAGCATGTCTACGAACTAAC
GGGGGTTCCAGTACCGCGGCAAAAACTGATGTGTAAGGGAGCGTGGAAGC
TGGCTCTCAAGGATGACGACGACTTGTCAAAGCTTTCAATCAAGGATGGT
GCGGCGGTGACGCTCATAGGAACAGCAGATGTGGTCAAGGAGCCAGTAGA
GAAGGTGGTTTTTGTCGAAGACATGGCACAGGCGGATCAGGCCAAGACGG
GCGCCATTCTTCCTGCGGGACTGCGCAATCTAGGCAACACCTGCTACCTC
AATTCGACGTTACAATGTCTCCGGTACGTACCAGAGCTTCGACAGGCTTT
AAACAGGTACACTGGGACGGGCGCCAACGAGCAACCATTTTTGACGAATG
CCCTTAAGGACACGTTCAATCTACTCGATGGCAACACGGAACCTGTGCCC
CCTATGCAATTCGTCATGTTGCTGCGCCAGCAGTTCCCTCAGTTCGCCCA
GCAGTCTCGCGGTCACTTCATGCAGCAAGATGCCGACGAATTCATGAACG
AGCTTTTGACGTCGCTCGCGGCCAACCTGCGCGACGCGTACGGGCTCCCC
TCTCTGGAGGACGCCGGGAATTTCGTCGACGCCTTGTTTGGGATGGAAGT
GGAGGACACGTTATCCTGTGCCGAGTCGGAGGCCGAGAAACCGGTCGTGA
AGAGAGATCATGTACGGAAGCTGGTCTGCAACATCCAGGGCGGTGCTGGC
AGCGACGTGAAGATCAACTATCTGCATGAGGGGGTGAAGTTGGCCTTGGA
GGGGACGATCGAGAAGCAGAGCGAGGTTCTGGGGCGCGACGCGGTCTGGA
ATAAGACCACCCGCATAGCTCGTCTGCCGCGCTATCTCTGTGTCCAATTC
ATGAGGTTTTTCTGGAAAGCGACCCCAGACAGTCAGGACCACGCCGGTGT
GAAATGCAAGTCTCTGCGGACCGTCACCTTCCCCGAGACCCTCGACATGT
TCGACTTCTGCAACAAGACACTCCAGGACCGGCTCATGATCACGCGCGGA
AGGGAAGTGGACGACATCCTGGGCAAGGATTCGAAGAAGAAGGGCGACGG
CCTTGGTGGAGATGGGGGCGACCCGGAGGCCAAAGGCGAGGAGAGCAGCG
GCAACGGCAGTTCTGAAGAAGAGGCCGCGTTGCAGGCGGCTCTGGCCATG
TCCATGGCGGATTCTGCAGATGCAGCTGTGCCTCCTGCTCCCTGTGGTCC
AGGTCTGCCAATGGATTTCAAGGGCTTGTACGAGCTCTTCGGCGTGGTGA
CGCACAAGGGTAGGACGGCCGACGGGGGGCACTACATGGGCTGGGTCCGT
CAGAAGGGGGACGACTGGCTGGTGTTTGACGACGAAGACGTGTCCGAGTG
CAAGACGGCGGAAGTCCTACAGCTTTCAGGGGGTGGGGATTGGCACATGG
CCTACCTCTGCTTCTATCGCTTCAAGGGCACAGGAGGGGTTGCAGACGAG
AAGGGGTCCTCTAGAGAGGGCAAGGAGTGAGCGGAGGGATGATGTACGGT
GAGACACTGGTCAGGCAGACGCGTGTAGCGGTCGCTTTCGTGAGAGGCGA
GGAGTGCGGCTCCGTAAGGAGAGGGTCATCGGTTCTCGAAAGCATATGTA
AAGAAGAAAGACCGAACATGCGCTCTTGATCTGCATAACTATCACAGGCG
TCGTGATGCGTGCTTTTCATAATTTCGGAATGAAACTTGTCGTGCGGCAT
TCAATTCTTAAGTTGTCTTCTACATACAAATGGTCATTGTTGTTCTTCAG
TTATTTGGAGTCCCGGGCTGGATGTTGGGG

Coding sequence (CDS) from alignment at CM002466.1:286130..288209-

>rna5559 ID=rna5559|Name=rna5559|organism=Nannochloropsis gaditana|type=CDS|length=1590bp|location=Sequence derived from alignment at CM002466.1:286130..288209- (Nannochloropsis gaditana)
ATGGCACCCACTAAGGTGCAAATCAAGTGGAATAAGCAGACTTTCTCTGA
AGTTCCGCTTGACACAACGGGAACTGCGCTGACTTTCAAACAGCATGTCT
ACGAACTAACGGGGGTTCCAGTACCGCGGCAAAAACTGATGTGTAAGGGA
GCGTGGAAGCTGGCTCTCAAGGATGACGACGACTTGTCAAAGCTTTCAAT
CAAGGATGGTGCGGCGGTGACGCTCATAGGAACAGCAGATGTGGTCAAGG
AGCCAGTAGAGAAGGTGGTTTTTGTCGAAGACATGGCACAGGCGGATCAG
GCCAAGACGGGCGCCATTCTTCCTGCGGGACTGCGCAATCTAGGCAACAC
CTGCTACCTCAATTCGACGTTACAATGTCTCCGGTACGTACCAGAGCTTC
GACAGGCTTTAAACAGGTACACTGGGACGGGCGCCAACGAGCAACCATTT
TTGACGAATGCCCTTAAGGACACGTTCAATCTACTCGATGGCAACACGGA
ACCTGTGCCCCCTATGCAATTCGTCATGTTGCTGCGCCAGCAGTTCCCTC
AGTTCGCCCAGCAGTCTCGCGGTCACTTCATGCAGCAAGATGCCGACGAA
TTCATGAACGAGCTTTTGACGTCGCTCGCGGCCAACCTGCGCGACGCGTA
CGGGCTCCCCTCTCTGGAGGACGCCGGGAATTTCGTCGACGCCTTGTTTG
GGATGGAAGTGGAGGACACGTTATCCTGTGCCGAGTCGGAGGCCGAGAAA
CCGGTCGTGAAGAGAGATCATGTACGGAAGCTGGTCTGCAACATCCAGGG
CGGTGCTGGCAGCGACGTGAAGATCAACTATCTGCATGAGGGGGTGAAGT
TGGCCTTGGAGGGGACGATCGAGAAGCAGAGCGAGGTTCTGGGGCGCGAC
GCGGTCTGGAATAAGACCACCCGCATAGCTCGTCTGCCGCGCTATCTCTG
TGTCCAATTCATGAGGTTTTTCTGGAAAGCGACCCCAGACAGTCAGGACC
ACGCCGGTGTGAAATGCAAGTCTCTGCGGACCGTCACCTTCCCCGAGACC
CTCGACATGTTCGACTTCTGCAACAAGACACTCCAGGACCGGCTCATGAT
CACGCGCGGAAGGGAAGTGGACGACATCCTGGGCAAGGATTCGAAGAAGA
AGGGCGACGGCCTTGGTGGAGATGGGGGCGACCCGGAGGCCAAAGGCGAG
GAGAGCAGCGGCAACGGCAGTTCTGAAGAAGAGGCCGCGTTGCAGGCGGC
TCTGGCCATGTCCATGGCGGATTCTGCAGATGCAGCTGTGCCTCCTGCTC
CCTGTGGTCCAGGTCTGCCAATGGATTTCAAGGGCTTGTACGAGCTCTTC
GGCGTGGTGACGCACAAGGGTAGGACGGCCGACGGGGGGCACTACATGGG
CTGGGTCCGTCAGAAGGGGGACGACTGGCTGGTGTTTGACGACGAAGACG
TGTCCGAGTGCAAGACGGCGGAAGTCCTACAGCTTTCAGGGGGTGGGGAT
TGGCACATGGCCTACCTCTGCTTCTATCGCTTCAAGGGCACAGGAGGGGT
TGCAGACGAGAAGGGGTCCTCTAGAGAGGGCAAGGAGTGA

Synonyms

Publications