|
|
Properties
| Property Name | Value |
|---|
| Product | octopine dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100016g51.2947.mrna |
| Orig protein id | gnl|cribi|Naga_100016g51.2947 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:281487..283456 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5557 ID=rna5557|Name=rna5557|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp
GCATCATGCATGCCGGAACAAAGTCGCCGAGGATGGTTGCTCTTGCGCGA
CACATACTTGCACTGGTGCCCGCTTTTCATTCGTGATCACACGGCACCCG
ACGTCCCATGTCCAAGGGAAGAGTGGGATTGGTGGAATGTATTAAAGAGT
TCCTTCATATTTTTTTGCAGGAGAAGAAGGCTGCTCCAATGCTCTGGTAG
ATAAGGCGTCTTCGTCTTTTTTGCCTCCCGCGCGGACAAGTGAACAAGAA
ACAGCAACGGCGTCCTGCAAAGCACAGAAAAACCAAAAAATGCCCAAACG
TCAAGGTCGTAGCGATGGGGCGATGCTGAAAGCAAAATCGAATTCCAAAC
GTGGACGCGATGGTTCTGTGACAACAGACAATGAGGAGCACGTACGTGAT
TCGCATGCCAAGGGTGTAGTACGACGGCCTCGTGCTATACACGCACAAAG
CGAGACGAGCCGTGTCGAGAGTGAAAGCAAAGACCTGGGCCACGGGGATG
ACTTGGACCCCGTCACCTTGGCACGGCCGAGTCGCGCGGCTGCCTCCACA
GCCAAAGCTCGGATTGGGAAAACTTTCGAATATAGGGGCACGGGCGGTAA
CGCAATCGCGGAAAAGGTCCACACAAACGGTGAAAAGAAGGAGTCTAAGC
CCGAGAAGGCAGCAGCGCGACAGAGCGGAAGCCTTCGGGAGGCTCCGCAC
CGTTTAGAGCTTGTGGCGGACAGGCATTCCAAGGGCGCGTTGCTGGACGC
GCTAATCCGAATCAAGCCCCCCGATGTGCTCATGAAAGCCTTCAAGTGGT
CTTCGCGCAACGACAAGTACTTTGCCTTGACTGTTTTCAGCGCCAAGGGA
AATCGGATCCTGCCCGAGCTTCTCAAGGAAGTTCCCTTGCGCTACCGTAT
CGCCTCTGTGGGGGCGAGGCGTTCCAATGAAACGACAAGCAAGGAAACCG
GTGAGGAAGAAGTCCTGTACGACGAGGCCGGGAAAGCAACGCACGGTGGC
ATGTACTATTTTCGGGTTCCGCAATTCAAAATTCCCGGCTGTTACTCGAT
CAGTTTCCAGCTGCAGGGACCCGCGGCGTTCAACAAGCTCGACCCCGTCT
CGCAGATCGTCACTGTCGTTCCCGCAGATGCACTCGAGCACACCGATCCT
TTCCCACCGAGGGCGCAGGAGAATGAAGCCATGGCGCTTCCAACAGGGAC
CCTGCGAAGTCTTCGCAGTCAGCGTCAAGGCGCCGAAGGGAGCGCGTCAA
ATGCGGCGGTGGGCCGGGGGTCTACCCGCGACCCCGCCCTCGGAGGAGGA
GGCAATGCCAGGGTGCAGCACAGCCTTGAGAAGCACCTGGCTGCGTCAGT
AAAGGAGGATACGGATTCCATGCTGACTTTCGACGAGCTGTGGCTGAAAG
GGCAGCTTCTCACTTTGGTCATTCCAGGCGCCTTGCGGCAACAATTGTGC
GAGGACTGGTTCGCTATCACTCGTCGGAGGTGTGTTGTCGGCGCTTTGCC
CCGCCACGATGGAAAAAAGAACATTCGTCTTGGGAAACAGACGTCGAACC
CTCAGTGGCCCAGCGTGGGGGAGGTGGTCAGAATGTACGAGAGGTCAATC
CCAGCCGCATCCCTGGGAGATTTCAAGGGCCTAGGCGCAAGACTCTGCAC
GTTGTTCGACGGTGCTCTGGGCAACGTTTTACTGTACAGATTTGAAATGG
ACCAGTACTTATCTTTGCTGGAGCTCGGAGGGAAATCCAAGCTTCCTCAT
CAAATATGGGGTGCGGAGCACCTCCTTCGCCTTCTTGCTATCGCTCCTCG
TCTACTGGGAATTCAGAAAAGTACCAGCAACAAGAAAAGAGTGGACGAAG
AGAGCTCCGATACCCTGATGAATAGTGAAGCCCCCGTGGGGATGGAGGTC
GAGAGACCTGGGTCGAGAGAGATCGAGGTCGCACGCACATACCTGCAAGG
ACTTCTCGACTTCCTAGAGACGGAGCAAGCGAGTCTGTTTGCGTCGTACG
TGGAGCCACCGGGTAAATTTGGACTAGATGTTCCGCGTAATTTTCGGCCA
AGCTAAATTGCGCCACAAGAATGACCTTTCGCGGATGGCACGATGGTTAT
AATTCCAAGAAGACTCGGCAACTGTTAAAACTACCTTAGAAAGAAGCAAG
CCTTCTTTCGCGTACATGACTTCCTGCCATCAACAAACGGGGTTGTCCCC
CGCTCGTTGTCTTGCTCTTTTGACTAGACGTCCCAACACATAGCGAGGAT
GGCTTTTGTCCGGATGACTTTGGCCTTCAGAGAAAGAAACACTTTCCGAA
GCATTGCCTC back to topprotein sequence of rna5557 >rna5557-protein ID=rna5557-protein|Name=rna5557|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
MTLSVAQAENMLKRQLEERKRGPSYGRLPRQVTICGGGNGAHVCAGFLAW
KGIKVNVLTRRPREWAPSIEIITQSSSWEAKGTFAGTLHVVSDEASRVVP
GSEYVIIAAPANAHPALLTKVAPHLDFGAKIGALFAQGGFDWAVKHAFGT
EKIKRIGVMFGLQNIPWICKAVKYGHSARILGPKKGLWVATYPVEARDAT
ARDLESMFDIPCHTLPNFLNLTLTPSNQIIHPARYYAIFRDWDGKRSYSR
RELEAREGLTLYKGMDEYSAECLATLDNELQQIKFALLQQFPQLDLSYVM
PIGERIVNQYGDDVTNRSSLRQIFRSNRGYSSCLTPLKEQSPGRYQPLVE
SRLFWEDIPYGLVILKNLVELLGNFPTPAIDFMIRWHQTFMKKDYLLSDN
QLNPRLLHETGAPCKYGIHRVEEIVETCLPRELLGYRHPRSRM back to topmRNA from alignment at CM002466.1:281487..283456- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5557 ID=rna5557|Name=rna5557|organism=Nannochloropsis gaditana|type=mRNA|length=1970bp|location=Sequence derived from alignment at CM002466.1:281487..283456- (Nannochloropsis gaditana)
GCGTTATCACACTCTTTGAATACATCTTTGAAATATGTATATTTTGTTAG
GGGAGAAATACAATACTCGGTGGGAAAACTTGCCGATCATACGTTTGTGG
CTTCATATGCCCCGAGGGGTGGCGTAACAGAATACTTCATGCCATTTCCG
AAGCGGGTAAGCTCCAAGGTCGCGCTTCCTATTCGCAGTGCACTTTGCAT
TCTCTTACATTTTAGCTACATCAACATAAATCGTAGGACATTCCTTGGCT
CTTCGGATAAAAAAGCGAAATTTCTGGAGCTTGCCGCGCAGCAATGCGCC
TGATTGGATGCTGATTGTAGCACAAGGCTGGACGTTTTTAACCCATTATG
ACGCTCTCCGTCGCGCAAGCTGAAAATGTACGTGACAGTCGTCCGTAAGA
TGGGCTCTGTACATACAATTTGCGGTGTGTCTGTAAATCGCCTTTAAAAT
TTCATCCTCACAAACGCTCTTTGATTGCTGCGTGCAATTTTCTTGATGCT
ATAACTCTTCTCTTTGGTCCGTTGTGCTCGTACAGATGCTAAAGCGGCAG
CTCGAGGAGCGTAAGCGAGGCCCCAGCTATGGTCGCCTACCGCGACAAGT
GACCATTTGCGGAGGTGGGAACGGAGCGCATGTTTGTGCTGGATTTTTAG
CCTGGAAAGGTATAAAAGTGAACGTCTTGACACGCCGACCCCGTGAATGG
GCTCCATCCATCGAGATCATCACGCAAAGTTCCTCGTGGGAGGCGAAAGG
GACGTTTGCGGGGACCTTACATGTGGTCAGTGACGAGGCGTCTCGCGTCG
TTCCAGGTTCGGAGTACGTCATAATTGCGGCACCCGCAAATGCACATCCG
GCTCTTTTGACCAAGGTGGCGCCGCATCTCGATTTCGGGGCAAAGATCGG
AGCTTTGTTTGCTCAAGGAGGCTTCGATTGGGCTGTAAAGCATGCGTTCG
GGACTGAGAAGATTAAGCGAATCGGTGTCATGTTCGGTCTACAAAATATA
CCGTGGATCTGCAAAGCCGTCAAATATGGCCATTCTGCACGTATCTTAGG
ACCCAAGAAGGGGCTGTGGGTTGCCACCTACCCAGTAGAGGCTCGCGACG
CGACTGCTCGCGACCTGGAGAGCATGTTTGATATCCCCTGTCACACTTTG
CCGAACTTCTTGAATCTGACCCTCACTCCGTCGAACCAGATTATTCACCC
AGCCCGCTATTACGCAATTTTTCGCGACTGGGACGGCAAGCGAAGCTACA
GTAGGCGCGAGCTGGAGGCCAGGGAGGGCCTTACGCTGTACAAGGGGATG
GATGAGTACTCAGCGGAGTGTCTCGCTACCCTGGACAACGAGCTGCAACA
GATTAAATTCGCCCTTCTTCAGCAGTTTCCCCAGCTTGACTTGTCTTACG
TCATGCCTATAGGGGAGCGAATCGTCAATCAGTACGGTGATGACGTCACC
AATAGATCCTCCCTTCGTCAAATTTTTCGCAGCAATAGAGGGTACTCGTC
TTGCCTGACGCCTCTAAAGGAGCAAAGCCCGGGGCGATATCAGCCGCTGG
TGGAGTCAAGGCTCTTTTGGGAAGACATACCTTATGGCTTGGTCATCCTC
AAGAACCTGGTGGAGCTCCTCGGCAACTTCCCGACTCCAGCCATCGACTT
CATGATTCGGTGGCACCAGACGTTTATGAAGAAGGACTACTTGCTGAGCG
ACAACCAGCTCAATCCGCGCCTGCTCCACGAGACGGGGGCACCCTGTAAA
TACGGCATCCATCGGGTAGAGGAGATCGTTGAGACTTGTCTGCCGCGCGA
GCTCTTGGGGTACCGTCATCCTCGCTCGCGCATGTAGTTGTTTGTATCCC
ATTTATTTGCCCGCACCATCCGCGGCTAAAACTTGGTGTGTATATCTATT
TTTGAAAGTACTCAATGGCGAAAAATGATGTTCATAGATTGATCGAAAGA
AAAAGCATTTAAATTACCGA back to topCoding sequence (CDS) from alignment at CM002466.1:281487..283456- >rna5557 ID=rna5557|Name=rna5557|organism=Nannochloropsis gaditana|type=CDS|length=2664bp|location=Sequence derived from alignment at CM002466.1:281487..283456- (Nannochloropsis gaditana)
ATGCTAAAGCGGCAGCTCGAGGAGCGTAAGCGAGGCCCCAGCTATGGTCG
CCTACCGCGACAAGTGACCATTTGCGGAGGTGGGAACGGAGCGCATGTTT
GTGCTGGATTTTTAGCCTGGAAAGGTATAAAAGTGAACGTCTTGACACGC
CGACCCCGTGAATGGGCTCCATCCATCGAGATCATCACGCAAAGTTCCTC
GTGGGAGGCGAAAGGGACGTTTGCGGGGACCTTACATGTGGTCAGTGACG
AGGCGTCTCGCGTCGTTCCAGGTTCGGAGTACGTCATAATTGCGGCACCC
GCAAATGCACATCCGGCTCTTTTGACCAAGGTGGCGCCGCATCTCGATTT
CGGGGCAAAGATCGGAGCTTTGTTTGCTCAAGGAGGCTTCGATTGGGCTG
TAAAGCATGCGTTCGGGACTGAGAAGATTAAGCGAATCGGTGTCATGTTC
GGTCTACAAAATATACCGTGGATCTGCAAAGCCGTCAAATATGGCCATTC
TGCACGTATCTTAGGACCCAAGAAGGGGCTGTGGGTTGCCACCTACCCAG
TAGAGGCTCGCGACGCGACTGCTCGCGACCTGGAGAGCATGTTTGATATC
CCCTGTCACACTTTGCCGAACTTCTTGAATCTGACCCTCACTCCGTCGAA
CCAGATTATTCACCCAGCCCGCTATTACGCAATTTTTCGCGACTGGGACG
GCAAGCGAAGCTACAGTAGGCGCGAGCTGGAGGCCAGGGAGGGCCTTACG
CTGTACAAGGGGATGGATGAGTACTCAGCGGAGTGTCTCGCTACCCTGGA
CAACGAGCTGCAACAGATTAAATTCGCCCTTCTTCAGCAGTTTCCCCAGC
TTGACTTGTCTTACGTCATGCCTATAGGGGAGCGAATCGTCAATCAGTAC
GGTGATGACGTCACCAATAGATCCTCCCTTCGTCAAATTTTTCGCAGCAA
TAGAGGGTACTCGTCTTGCCTGACGCCTCTAAAGGAGCAAAGCCCGGGGC
GATATCAGCCGCTGGTGGAGTCAAGGCTCTTTTGGGAAGACATACCTTAT
GGCTTGGTCATCCTCAAGAACCTGGTGGAGCTCCTCGGCAACTTCCCGAC
TCCAGCCATCGACTTCATGATTCGGTGGCACCAGACGTTTATGAAGAAGG
ACTACTTGCTGAGCGACAACCAGCTCAATCCGCGCCTGCTCCACGAGACG
GGGGCACCCTGTAAATACGGCATCCATCGGGTAGAGGAGATCGTTGAGAC
TTGTCTGCCGCGCGAGCTCTTGGGGTACCGTCATCCTCGCTCGCGCATGT
AGATGACGCTCTCCGTCGCGCAAGCTGAAAATATGCTAAAGCGGCAGCTC
GAGGAGCGTAAGCGAGGCCCCAGCTATGGTCGCCTACCGCGACAAGTGAC
CATTTGCGGAGGTGGGAACGGAGCGCATGTTTGTGCTGGATTTTTAGCCT
GGAAAGGTATAAAAGTGAACGTCTTGACACGCCGACCCCGTGAATGGGCT
CCATCCATCGAGATCATCACGCAAAGTTCCTCGTGGGAGGCGAAAGGGAC
GTTTGCGGGGACCTTACATGTGGTCAGTGACGAGGCGTCTCGCGTCGTTC
CAGGTTCGGAGTACGTCATAATTGCGGCACCCGCAAATGCACATCCGGCT
CTTTTGACCAAGGTGGCGCCGCATCTCGATTTCGGGGCAAAGATCGGAGC
TTTGTTTGCTCAAGGAGGCTTCGATTGGGCTGTAAAGCATGCGTTCGGGA
CTGAGAAGATTAAGCGAATCGGTGTCATGTTCGGTCTACAAAATATACCG
TGGATCTGCAAAGCCGTCAAATATGGCCATTCTGCACGTATCTTAGGACC
CAAGAAGGGGCTGTGGGTTGCCACCTACCCAGTAGAGGCTCGCGACGCGA
CTGCTCGCGACCTGGAGAGCATGTTTGATATCCCCTGTCACACTTTGCCG
AACTTCTTGAATCTGACCCTCACTCCGTCGAACCAGATTATTCACCCAGC
CCGCTATTACGCAATTTTTCGCGACTGGGACGGCAAGCGAAGCTACAGTA
GGCGCGAGCTGGAGGCCAGGGAGGGCCTTACGCTGTACAAGGGGATGGAT
GAGTACTCAGCGGAGTGTCTCGCTACCCTGGACAACGAGCTGCAACAGAT
TAAATTCGCCCTTCTTCAGCAGTTTCCCCAGCTTGACTTGTCTTACGTCA
TGCCTATAGGGGAGCGAATCGTCAATCAGTACGGTGATGACGTCACCAAT
AGATCCTCCCTTCGTCAAATTTTTCGCAGCAATAGAGGGTACTCGTCTTG
CCTGACGCCTCTAAAGGAGCAAAGCCCGGGGCGATATCAGCCGCTGGTGG
AGTCAAGGCTCTTTTGGGAAGACATACCTTATGGCTTGGTCATCCTCAAG
AACCTGGTGGAGCTCCTCGGCAACTTCCCGACTCCAGCCATCGACTTCAT
GATTCGGTGGCACCAGACGTTTATGAAGAAGGACTACTTGCTGAGCGACA
ACCAGCTCAATCCGCGCCTGCTCCACGAGACGGGGGCACCCTGTAAATAC
GGCATCCATCGGGTAGAGGAGATCGTTGAGACTTGTCTGCCGCGCGAGCT
CTTGGGGTACCGTCATCCTCGCTCGCGCATGTAGATGACGCTCTCCGTCG
CGCAAGCTGAAAAT back to top
|