|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100016g60.2963.mrna |
| Orig protein id | gnl|cribi|Naga_100016g60.2963 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:260423..262000 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5549 ID=rna5549|Name=rna5549|organism=Nannochloropsis gaditana|type=mRNA|length=2051bp
ATACTTAATCTAGGAACGTTTGTCTTCGAGTGAGGCATGACAAGCGGGCA
AACCAACCTTGCGGCCAATGTTGCTGCAATGAGTGGACTGGAAGGCTTTG
ACGCGGTAATCGTTTGCTGTTCAGGCGAAAAGCAGGCCGAATACTGGCAA
TCACGCTTGATGACCGTACGGGGTCAAGTCCTCCCAGCCACATGCAAGGT
ATTGGCTGTCTTCGAAGATTGGGCGGGAGATGGAGCGGGAAACGGATTCG
GAACCCTATATGCCTATCAGAATGCCATGACCAAGGCCAAGTCGCTTTAT
AATGGTTATGATTTGCATGCAGACATGCTGGCCAAGAAGGTGAGTGTGGG
ACTCTACCATACTGCTGGCAAAGGCACCCGTTTGGCTCCTTTACCGGGTG
CTGAAAACAACAACAAGCCAGGCGTCAAGCTTCCAGCTACCCTCTCGGTG
GGAGGAGAACAAGTGCCGATGACCATCTTGGAGGCTGTGCTGAAGCAAAC
AGGTGTCTACGCGCCTATGCGCAAGGGCCGCTTGTCTGTCTTCTGGGGCG
ACCAAGTCTTCGTGCCTACAGTGCCCGTGGCTGCCTACACGCCAACGCAT
CATGCAGATATCCTATGCTCGTTGGGACCTATGCCTTCAGCCGAAGAATG
GGAAGCCAAAGGGCTAGACAAGTACGGTCTCATCGCGGTAAATGCCGACG
GTGAGGCGGCCCAGATTGAAAAAGTCAAGCACGCAACAGCGCGGGCCTTA
CTAGCCGATTTCGGGGAAGTGACACGAGTGGGAGTTTCGCTTGGCTCCTT
TTCTTTAAGCGCCTATCTGCTGGTGGCGTTTCTCGACGAATTTCAGAAAG
AGCTGACTGAGAAGACAGCGAAGCTGGACACCGACCCTGGCATGTGGATG
GCTCTGACGCTATCCAAGGACTCTTACATTCAGCTACTCGAGGCGAAAAA
AACACCTGCCGCTGAGTCAGGCCCACACTTCGACCGAATGCATGCCATGG
TGGCCCGCTTTCGTGCCACGACTGAGGGCGCAGGGGGCTTGTTCGGAGCC
GTGGACATCGGGCAAGGTGCTTATTGGTGGGATTACGGCCAGCTCAAGCT
CTACTTTGCCAACAACATAAGTGTCACCCACACTGATGAGGAATCCCGAC
TGTACCGGGCCTTTCTAGGTGTGCCTGAATCGCGACGGACGCATGCGAAG
ATAGCTGAGGTCGTGGACGTCGATCCATGGTCGGTTATTTCCGCAGCACG
AGTGGACGGGGGGACGATAAAGCAATCTGTGCTGACAAACGTGAGTGCGG
TGAGCGTTGAAGCAGAAGGAGCTGTACTTGTGAACGTAACAGCGCGTAAA
GTGGTGGCGGGCCGGGGAGCAGTGCTGTACAATGTGGTTGACGAGTCGGA
AGAGGGGCTGGTGCTCGGTCCCAAAGAGGTGCTCGTCGGCGTCTTTGATG
CTCATGGTAAGCAGCAGCTGATGACCAGCAGCTTCGAAAAGGATGGCGGT
GTGTGGTGGAAAAAGGAGATTCGTGATGGGCAGCCGTCATTCGAGGCAGT
TTATCTGGCGAATCGTGACGTCGACGTAGCTCTCGTTGAGGCGACGGCTC
ATGACATGCATGCCACGCTACGCAACGCGATGTTTTCGAACAAACAAGTT
TGAGAGAGAGAGTTTTCGAAGCAAGATTTTTGGAGCTTGCTGAAGGAGGG
TCAAAGCGGTTTGTGGCCAGGCTCAAAGATTTGAGGGCGTATCGCTTCGG
AAGGACTGCGGGCATGGATGATAAATTAGGGATTGTTTTCAAACCCAAGG
AGACCAGAAGAAATCAAAGCGGAAATCTGGCTCTTGTGGTATACCCCGGT
TCGTGAATCAGCATCGCTTCCTTAAGTTATACGTCCTACAGAATCCTTGT
CGGGTTATAAAGCTCCACATAAATAAGCTCCTACTTCCCTCACCCGTGTT
GCTCTTCTCATCTTCCTGTATTAATGAGGAAAAACTTGCCGCGAGACCAT
GGCTGGGCTCCATCCGAGCATTCACTCGACCGTTACTAATCCATCACCTC
C back to topprotein sequence of rna5549 >rna5549-protein ID=rna5549-protein|Name=rna5549|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
MIFSNLYFTCVASYKANVCALFFECTDASISCLRLAALCRVVKRTRFTCV
ARHGNPSFLLFRPLLFVLISHPFFITLWWIAVEYYATDSIAGCGRSDNLT
DRFEAVPSSHLPSQHSRSRIKQFF back to topmRNA from alignment at CM002466.1:260423..262000- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5549 ID=rna5549|Name=rna5549|organism=Nannochloropsis gaditana|type=mRNA|length=1578bp|location=Sequence derived from alignment at CM002466.1:260423..262000- (Nannochloropsis gaditana)
AGGATAAACTCGATCGACACCATTTCATCCGAGTTATACCGTGTCTTGCG
TTTTTCTCGACTCCTTTGAGAGGGAATACACTTCCATTCAGATCTTCAGT
CAACGTTATTCAAAGTGGTGCCCGCTAGAGTGCGCCAGTCTCCGCCTTCC
AGATTGTCGGTGGCACCTCCCCTCGCTTGTCTTCCGAAGGTTTAGCCTTC
GCCATGCTTACCACGAGACATGATTTTCAGTAATTTATATTTTACGTGTG
TTGCGTCTTACAAAGCGAATGTTTGTGCACTTTTTTTCGAGTGTACGGAT
GCTAGCATCTCTTGCCTACGACTTGCTGCCCTTTGCAGGGTTGTGAAGCG
CACAAGGTTCACTTGCGTGGCACGGCACGGGAACCCCTCATTCCTTCTAT
TTCGCCCTCTTCTTTTCGTCCTCATTTCTCATCCTTTTTTCATCACCTTG
TGGTGGATAGCTGTGGAGTATTATGCGACTGACTCGATTGCCGGCTGTGG
CAGGAGTGACAATTTGACTGACCGGTTTGAGGCAGTACCCTCCAGTCACC
TGCCAAGTCAACATTCTAGATCGCGCATCAAGCAATTTTTTTAAAATCTG
CCTCACATTTTGTTTTTCCATGCCCACAGTTTTCATTTTATCACTGCCCA
CAGTTTACACCCCGTAGACATGAAGTTCACAGCTCTCTTTACCGTGGCGG
CCCTTGCCAGCGCCAGCGCCTTTGTTGTCCCTGCCCCTGCGGCTTCCCTC
GCCGGACCTTTGGCAGCCGCTGGAAAAGACGCGGGTGGCTCTGTGGGTCC
GAATGAGTACGTGCCCGCCGGTCTGACCCGCGCGCAGTGGGCAGAGATCA
AGGCGAAGGACGCCGCTAAGAAGGGAACCAAGAAAGCGAAGCCCACTAAA
GTGGAGTCTCTGGATGAATGGCAGAAAGAGTTTGAGTCGGGAGAAACTGG
ACACCGATTCGCTAAGATGAAGTTCGATGGCTGGTACAAGAGGTGAGCGT
CACTTGCTCTCCTTTGAAGAAAAATAGCGCTGCGTAATCTGACGGTCTCT
CCCTGTCTCAGTTTCGAGCGTGCTTATGAAATGGCGCAGGGTCTTGAATG
GAAAAACGAGGGACCGGTATGGGGTTAGGCAGTTGTCTAGGATTTGTCTT
CTAGAAGGTGTGGTTTGTCTATAGATATATCTGGGTAAGTTTTCTATCGT
AGGATCTAGGAAGTGAAGAGAAATGAGGGATGATGAGTCGGCTGAAGCTT
AGCTGCCTGCCTCCGGAGGTGATGGATTAGTAACGGTCGAGTGAATGCTC
GGATGGAGCCCAGCCATGGTCTCGCGGCAAGTTTTTCCTCATTAATACAG
GAAGATGAGAAGAGCAACACGGGTGAGGGAAGTAGGAGCTTATTTATGTG
GAGCTTTATAACCCGACAAGGATTCTGTAGGACGTATAACTTAAGGAAGC
GATGCTGATTCACGAACCGGGGTATACCACAAGAGCCAGATTTCCGCTTT
GATTTCTTCTGGTCTCCTTGGGTTTGAAAACAATCCCTAATTTATCATCC
ATGCCCGCAGTCCTTCCGAAGCGATACG back to topCoding sequence (CDS) from alignment at CM002466.1:260423..262000- >rna5549 ID=rna5549|Name=rna5549|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002466.1:260423..262000- (Nannochloropsis gaditana)
ATGATTTTCAGTAATTTATATTTTACGTGTGTTGCGTCTTACAAAGCGAA
TGTTTGTGCACTTTTTTTCGAGTGTACGGATGCTAGCATCTCTTGCCTAC
GACTTGCTGCCCTTTGCAGGGTTGTGAAGCGCACAAGGTTCACTTGCGTG
GCACGGCACGGGAACCCCTCATTCCTTCTATTTCGCCCTCTTCTTTTCGT
CCTCATTTCTCATCCTTTTTTCATCACCTTGTGGTGGATAGCTGTGGAGT
ATTATGCGACTGACTCGATTGCCGGCTGTGGCAGGAGTGACAATTTGACT
GACCGGTTTGAGGCAGTACCCTCCAGTCACCTGCCAAGTCAACATTCTAG
ATCGCGCATCAAGCAATTTTTTTAA back to top
|