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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100016g61.2965.mrna |
| Orig protein id | gnl|cribi|Naga_100016g61.2965 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:258686..260736 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5548 ID=rna5548|Name=rna5548|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGATCTATAAAGGCTTAAAATGGAAAATTCTGGCAGTCTTCTTCGATGA
CATTCTGATCTTCAGCCAGACCGCGGAACAGCACATCAAAGACGTCGAAA
CCACGCTGGACAGGCTCATCGACGCCGGATTGACGGTATTCCCGTCCGAG
TACTGGCCGAATTCACATACGAAGGCCGTTTTCTCCACTGAGTCCGTCTC
TACCTCTACTTGGTGA back to topprotein sequence of rna5548 >rna5548-protein ID=rna5548-protein|Name=rna5548|organism=Nannochloropsis gaditana|type=polypeptide|length=538bp
MTSGQTNLAANVAAMSGLEGFDAVIVCCSGEKQAEYWQSRLMTVRGQVLP
ATCKVLAVFEDWAGDGAGNGFGTLYAYQNAMTKAKSLYNGYDLHADMLAK
KVSVGLYHTAGKGTRLAPLPGAENNNKPGVKLPATLSVGGEQVPMTILEA
VLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAYTPTHHADILCSLGPMP
SAEEWEAKGLDKYGLIAVNADGEAAQIEKVKHATARALLADFGEVTRVGV
SLGSFSLSAYLLVAFLDEFQKELTEKTAKLDTDPGMWMALTLSKDSYIQL
LEAKKTPAAESGPHFDRMHAMVARFRATTEGAGGLFGAVDIGQGAYWWDY
GQLKLYFANNISVTHTDEESRLYRAFLGVPESRRTHAKIAEVVDVDPWSV
ISAARVDGGTIKQSVLTNVSAVSVEAEGAVLVNVTARKVVAGRGAVLYNV
VDESEEGLVLGPKEVLVGVFDAHGKQQLMTSSFEKDGGVWWKKEIRDGQP
SFEAVYLANRDVDVALVEATAHDMHATLRNAMFSNKQV back to topmRNA from alignment at CM002466.1:258686..260736+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5548 ID=rna5548|Name=rna5548|organism=Nannochloropsis gaditana|type=mRNA|length=2051bp|location=Sequence derived from alignment at CM002466.1:258686..260736+ (Nannochloropsis gaditana)
ATACTTAATCTAGGAACGTTTGTCTTCGAGTGAGGCATGACAAGCGGGCA
AACCAACCTTGCGGCCAATGTTGCTGCAATGAGTGGACTGGAAGGCTTTG
ACGCGGTAATCGTTTGCTGTTCAGGCGAAAAGCAGGCCGAATACTGGCAA
TCACGCTTGATGACCGTACGGGGTCAAGTCCTCCCAGCCACATGCAAGGT
ATTGGCTGTCTTCGAAGATTGGGCGGGAGATGGAGCGGGAAACGGATTCG
GAACCCTATATGCCTATCAGAATGCCATGACCAAGGCCAAGTCGCTTTAT
AATGGTTATGATTTGCATGCAGACATGCTGGCCAAGAAGGTGAGTGTGGG
ACTCTACCATACTGCTGGCAAAGGCACCCGTTTGGCTCCTTTACCGGGTG
CTGAAAACAACAACAAGCCAGGCGTCAAGCTTCCAGCTACCCTctcggtg
ggaggagaacaaGTGCCGATGACCATCTTGGAGGCTGTGCTGAAGCAAAC
AGGTGTCTACGCGCCTATGCGCAAGGGCCGCTTGTCTGTCTTCTGGGGCG
ACCAAGTCTTCGTGCCTACAGTGCCCGTGGCTGCCTACACGCCAACGCAT
CATGCAGATATCCTATGCTCGTTGGGACCTATGCCTTCAGCCGAAGAATG
GGAAGCCAAAGGGCTAGACAAGTACGGTCTCATCGCGGTAAATGCCGACG
GTGAGGCGGCCCAGATTGAAAAAGTCAAGCACGCAACAGCGCGGGCCTTA
CTAGCCGATTTCGGGGAAGTGACACGAGTGGGAGTTTCGCTTGGCTCCTT
TTCTTTAAGCGCCTATCTGCTGGTGGCGTTTCTCGACGAATTTCAGAAAG
AGCTGACTGAGAAGACAGCGAAGCTGGACACCGACCCTGGCATGTGGATG
GCTCTGACGCTATCCAAGGACTCTTACATTCAGCTACTCGAGGCGAAAAA
AACACCTGCCGCTGAGTCAGGCCCACACTTCGACCGAATGCATGCCATGG
TGGCCCGCTTTCGTGCCACGACTGAGGGCGCAGGGGGCTTGTTCGGAGCC
GTGGACATCGGGCAAGGTGCTTATTGGTGGGATTACGGCCAGCTCAAGCT
CTACTTTGCCAACAACATAAGTGTCACCCACACTGATGAGGAATCCCGAC
TGTACCGGGCCTTTCTAGGTGTGCCTGAATCGCGACGGACGCATGCGAAG
ATAGCTGAGGTCGTGGACGTCGATCCATGGTCGGTTATTTCCGCAGCACG
AGTGGACGGGGGGACGATAAAGCAATCTGTGCTGACAAACGTGAGTGCGG
TGAGCGTTGAAGCAGAAGGAGCTGTACTTGTGAACGTAACAGCGCGTAAA
GTGGTGGCGGGCCGGGGAGCAGTGCTGTACAATGTGGTTGACGAGTCGGA
AGAGGGGCTGGTGCTCGGTCCCAAAGAGGTGCTCGTCGGCGTCTTTGATG
CTCATGGTAAGCAGCAGCTGATGACCAGCAGCTTCGAAAAGGATGGCGGT
GTGTggtggaaaaaggagatTCGTGATGGGCAGCCGTCATTCGAGGCAGT
TTATCTGGCGAATCGTGACGTCGACGTAGCTCTCGTTGAGGCGACGGCTC
ATGACATGCATGCCACGCTACGCAACGCGATGTTTTCGAACAAACAAGTT
TGAGAGAGAGAGTTTTCGAAGCAAGATTTTTGGAGCTTGCTGAAGGAGGG
TCAAAGCGGTTTGTGGCCAGGCTCAAAGATTTGAGGGCGTATCGCTTCGG
AAGGACTGCGGGCATGGATGATAAATTAGGGATTGTTTTCAAACCCAAGG
AGACCAGAAGAAATCAAAGCGGAAATCTGGCTCTTGTGGTATACCCCGGT
TCGTGAATCAGCATCGCTTCCTTAAGTTATACGTCCTACAGAATCCTTGT
CGGGTTATAAAGCTCCACATAAATAAGCTCCTACTTCCCTCACCCGTGTT
GCTCTTCTCATCTTCCTGTATTAATGAGGAAAAACTTGCCGCGAGACCAT
GGCTGGGCTCCATCCGAGCATTCACTCGACCGTTACTAATCCATCACCTC
C back to topCoding sequence (CDS) from alignment at CM002466.1:258686..260736+ >rna5548 ID=rna5548|Name=rna5548|organism=Nannochloropsis gaditana|type=CDS|length=1617bp|location=Sequence derived from alignment at CM002466.1:258686..260736+ (Nannochloropsis gaditana)
ATGACAAGCGGGCAAACCAACCTTGCGGCCAATGTTGCTGCAATGAGTGG
ACTGGAAGGCTTTGACGCGGTAATCGTTTGCTGTTCAGGCGAAAAGCAGG
CCGAATACTGGCAATCACGCTTGATGACCGTACGGGGTCAAGTCCTCCCA
GCCACATGCAAGGTATTGGCTGTCTTCGAAGATTGGGCGGGAGATGGAGC
GGGAAACGGATTCGGAACCCTATATGCCTATCAGAATGCCATGACCAAGG
CCAAGTCGCTTTATAATGGTTATGATTTGCATGCAGACATGCTGGCCAAG
AAGGTGAGTGTGGGACTCTACCATACTGCTGGCAAAGGCACCCGTTTGGC
TCCTTTACCGGGTGCTGAAAACAACAACAAGCCAGGCGTCAAGCTTCCAG
CTACCCTctcggtgggaggagaacaaGTGCCGATGACCATCTTGGAGGCT
GTGCTGAAGCAAACAGGTGTCTACGCGCCTATGCGCAAGGGCCGCTTGTC
TGTCTTCTGGGGCGACCAAGTCTTCGTGCCTACAGTGCCCGTGGCTGCCT
ACACGCCAACGCATCATGCAGATATCCTATGCTCGTTGGGACCTATGCCT
TCAGCCGAAGAATGGGAAGCCAAAGGGCTAGACAAGTACGGTCTCATCGC
GGTAAATGCCGACGGTGAGGCGGCCCAGATTGAAAAAGTCAAGCACGCAA
CAGCGCGGGCCTTACTAGCCGATTTCGGGGAAGTGACACGAGTGGGAGTT
TCGCTTGGCTCCTTTTCTTTAAGCGCCTATCTGCTGGTGGCGTTTCTCGA
CGAATTTCAGAAAGAGCTGACTGAGAAGACAGCGAAGCTGGACACCGACC
CTGGCATGTGGATGGCTCTGACGCTATCCAAGGACTCTTACATTCAGCTA
CTCGAGGCGAAAAAAACACCTGCCGCTGAGTCAGGCCCACACTTCGACCG
AATGCATGCCATGGTGGCCCGCTTTCGTGCCACGACTGAGGGCGCAGGGG
GCTTGTTCGGAGCCGTGGACATCGGGCAAGGTGCTTATTGGTGGGATTAC
GGCCAGCTCAAGCTCTACTTTGCCAACAACATAAGTGTCACCCACACTGA
TGAGGAATCCCGACTGTACCGGGCCTTTCTAGGTGTGCCTGAATCGCGAC
GGACGCATGCGAAGATAGCTGAGGTCGTGGACGTCGATCCATGGTCGGTT
ATTTCCGCAGCACGAGTGGACGGGGGGACGATAAAGCAATCTGTGCTGAC
AAACGTGAGTGCGGTGAGCGTTGAAGCAGAAGGAGCTGTACTTGTGAACG
TAACAGCGCGTAAAGTGGTGGCGGGCCGGGGAGCAGTGCTGTACAATGTG
GTTGACGAGTCGGAAGAGGGGCTGGTGCTCGGTCCCAAAGAGGTGCTCGT
CGGCGTCTTTGATGCTCATGGTAAGCAGCAGCTGATGACCAGCAGCTTCG
AAAAGGATGGCGGTGTGTggtggaaaaaggagatTCGTGATGGGCAGCCG
TCATTCGAGGCAGTTTATCTGGCGAATCGTGACGTCGACGTAGCTCTCGT
TGAGGCGACGGCTCATGACATGCATGCCACGCTACGCAACGCGATGTTTT
CGAACAAACAAGTTTGA back to top
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