rna5546, rna5546 (mRNA) Nannochloropsis gaditana

Overview
Namerna5546
Unique Namerna5546
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2380
Alignment locationCM002466.1:257208..257742 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g63.2894.mrna
Orig protein idgnl|cribi|Naga_100016g63.2894
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:257208..257742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g63gene5359Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5546rna5546-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25085.1cds5532Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5546 ID=rna5546|Name=rna5546|organism=Nannochloropsis gaditana|type=mRNA|length=2380bp
AGTTGTCATCGACGTATCGGTCGGTGAAAGTTACCCTCCACTAGCGAAAT
GTAATCTTTACGACTAAAACTTTTCGTGTTTGACGTGGGCTCTCACTTGC
GTCCAAATATCTACACACAGCTTCTCTTCTACGCGGTGGATATCCATGGA
GATCAATCGAAGCTCTGCTGGAATGGACGATATAAGCACACCCAAAAATG
AGTTTCCCTCCTCCTCGCCCGGTGATTCTTTCATCAACGGCATGCATTCT
ATGCCTGATGAAGGCGTTGTGAACCTTCTGGTAGACCTCCCAGCGAGCGT
GCAATCACTGTTGTTGAATATCATCCTCATCTTCGTCACCATCTACTTGA
GTAATGCTTCGGATTACTTACGTAGTGTTGTGCACAAGAATCCGGACCTT
CGCTTTCGACCTCTACTCCGCCTGGTGACAGATATGCCGGAGAGCACAAT
TGCCGTCATCGCGGGAATGATTCTTGGATTTATTCTTTCGGAGGGATTTA
GCATCCGGGCGCATTTCTCGGAAGAGGTATTTTTCTATTTCATTTTGCCG
CCCATTATCTTCTATCAAGGGTACTCACTGAAGAAGCGCAACTTCTTCCG
GTATTTCCATTACATTTTCACTCTTGGGGTGGTTGGCACCCTTATGCATA
TGGGCGTCGTTGCTCTTGCACTTATTTTCCTGAACAAGGCGTGGATCTCT
TTGGGCCTTCCCTTGGTGGGATGGGACGACGTCACGAAGGGCCAAGCCCT
GGAAATCAACGATATCCTTCTGCTCTCCAGCGTTTTGAGCTCAGCTGACG
AAGTGGCAGCTTTGGCCATGGTGAATAAGGACGACCACCCAAAGCTAAGC
GCCTTACTTTTCGGCGAAGGCGTACTCAATGATGCTGTTTCTATCCTTCT
TTTCCGCTCCGTCCTGCGGGGAGACGCTGACTCAAGTTTCTACGCCGTGA
CAGTGGCTTACACTGCCATTTTCCTCCTATTTTCTTCGACATTAATCGGC
TTGGCCGTGGGGCTGAGCATTTCTCGGCTCTTAAAGGTGAACACAGGACT
AAACGATCACCCCACACGCCAAACCATCATTATCGTCCTTGGGTGCTACG
TGTCCTACGCGGTTGCTGAGCTTCTCGACGTGAATGGTGTCCTCTCGGTC
TTCGTCTGCGGCATCATCTTTTCTCACTTCGCATGGCACTGCCTTGCTCC
GGAGGCAAAGATCGGCACTGCCATCTTCTCTCGCTCCCTCTCCCAAATCG
CGGAGATCTACTCCTTCACGGCCCTCGGGCTCAGCGTTTACCGCTTCCAT
ACTCGGGACTTCTCGCTCCGATACCTCTGCGTCTCTGTAATGTCCATGGG
ACTGGCCCGAGCCTGTGTCGTGTTCGGTCTTTTCGGTCTCGTCGTGTACT
GTGACCGCGAGAACGACTCGGCAAGCCCCTGGAAGGACCAGCTCGTGCTC
TTTGGCGCGGGGCTTGTGCGTGGCGCCATCACCTGGGCGCAGGCATTGCA
ACTGCCGGGGAAGAATCGCAAAGTCCTCATCTCCACAACGCTGCAAGTTA
TTTCCTTCACGCTCGTGGTGGTTGGCGGAGCTCTCCCGTCCATGCTGCGC
GCCCTCGGTATGGGGGAGACAGACTCTCTGGAAGCCCCGGAGATGGTGGG
AGTGGCCGAGGCTGTTAGCGACAGCGGCTACGATGTAGAAGGGGATATCA
ACAATGGAGAGACGCCTCCTTGCTTCTCGCGCGCCACGTCCTCAGAAGAC
GTGCGGCCCCTCCTCAACCGAGATGACAGCTTCGGCAGGAAAGGGGGAAG
GAGTTGCAGGGCCGCTTCGAAGGACGCGCACCTCAGCCCTATCCCCGACG
CGCCCCCGCTTCTGCGAGGCGGCTCTATCGAGCCCTCGATGGTGCTGAAA
GGGCGAGTGCACCGTTTGTGGGCCCACATCGATGAGACACTCAAGCCCTT
CTTCGGGGGCCGCAGTCGGGTGCTGGCTCCAGGGGGCTCGTACATCAGCA
GCGCTGAAGGCTGCTATATGAGTACGGCCACGCTTCGCAGTGCGCAAAGC
TACTACGGCTCAACGGCGCCGAATGCATTGAATAGTGGGCCTGACGTCAA
ACGCCCTGATGGTCAGTACGGGAAAACAAAGGGCAGTACGGGCGCCAGCA
ACAATCAAGCCGTGGACCCGCAGGCCCTGAAGGCCTCCTTCAAATCAAGT
GGATTTCAAGTGCCTACACGTATCTTGAACAAGCTTGCCAACCAAAAGCC
CGATGGCTCGTCCGTAGAACCGATAAAAACGTCGAGTAAGAAACTTGGTC
CGTCGAAAAAATAAGTGAAGGATGCGAAAATGAAATAAATCTGGGCGAGC
GACGGATACTCGCCTGTTGAGTGGCTCACA
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protein sequence of rna5546

>rna5546-protein ID=rna5546-protein|Name=rna5546|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MHESNSVIGFELVRSTGIQDPSFASFESSGFGSSPELTPAVSENKLIWFP
GSIMSDAAVSLSPARI
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mRNA from alignment at CM002466.1:257208..257742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5546 ID=rna5546|Name=rna5546|organism=Nannochloropsis gaditana|type=mRNA|length=535bp|location=Sequence derived from alignment at CM002466.1:257208..257742- (Nannochloropsis gaditana)
ATGCACGAATCCAACAGCGTGATCGGGTAATGTACCTCGCTGTTGCGCAA
CGTCTCAATTAATGCCCGACAATAAATCGCGAGTCCAGCTTTGCCTTTAT
GTTGGTCAATGACGATTGGCGCGGCCCATGGTGAGGCCGAGGGTCGGATA
ATTCCGGCTTTTAATCAGGAGTTTGTTCTGCAACAATTCGTCTTGCGAAT
AGGGCATTCGCTTCGGTGGTTGGGCGAGGGGACGACTGGATCCCGTGTCC
AGCTTTAATTTCAATAATCCCGTCTTTCCCAGGAACTCCGGGTCTCGCGC
GAAGGCATTGTATTTTGACCGGATCATGGTGTCGAATTCCTCCTTTTCTT
GAAGTGAAAGATTTGAACTTGTCAGGTCCACTGGGATCCAAGATCCATCC
TTTGCTTCTTTTGAGTCCTCCGGCTTCGGATCATCTCCGGAATTGACCCC
TGCGGTGTCGGAGAATAAATTGATCTGGTTCCCCGGATCCATCATGTCCG
ACGCCGCCGTTAGTCTTTCCCCCGCTCGTATCTGA
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Coding sequence (CDS) from alignment at CM002466.1:257208..257742-

>rna5546 ID=rna5546|Name=rna5546|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002466.1:257208..257742- (Nannochloropsis gaditana)
ATTTGAACTTGTCAGGTCCACTGGGATCCAAGATCCATCCTTTGCTTCTT
TTGAGTCCTCCGGCTTCGGATCATCTCCGGAATTGACCCCTGCGGTGTCG
GAGAATAAATTGATCTGGTTCCCCGGATCCATCATGTCCGACGCCGCCGT
TAGTCTTTCCCCCGCTCGTATCTGAATGCACGAATCCAACAGCGTGATCG
GATTTGAACTTGTCAGGTCCACTGGGATCCAAGATCCATCCTTTGCTTCT
TTTGAGTCCTCCGGCTTCGGATCATCTCCGGAATTGACCCCTGCGGTGTC
GGAGAATAAATTGATCTGGTTCCCCGGATCCATCATGTCCGACGCCGCCG
TTAGTCTTTCCCCCGCTCGTATCTGAATGCACGAATCCAACAGCGTGATC
GG
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Synonyms
Publications