rna5534, rna5534 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5534
Unique Name	rna5534
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	747
Alignment location	CM002466.1:228443..231235 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100016g75.2917.mrna
Orig protein id	gnl\|cribi\|Naga_100016g75.2917
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:228443..231235 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100016g75	gene5347	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25108.1	cds5520	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5534	rna5534-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:228443..231235-
coding sequence from alignment at CM002466.1:228443..231235-

mRNA sequence

>rna5534 ID=rna5534|Name=rna5534|organism=Nannochloropsis gaditana|type=mRNA|length=747bp
ATGCTCTACTCAAGTCTTCATCATCCTTCTGAAATTCACTGCTGCTCGCA
CACAAAAAGCCGCCTAACGCTTATTTTGTTCAACCATGGATCGAAAGGGT
ATACACAAAATCTGCATCACTGTTATAGTGCTATTTGCTCGTGCGTTCTA
CAGGACAAGACCTTTGCTACATCTCAAAATAGTGCTGAATATCAAGAAAA
CTCTCCTTCCGAAGGACCCTGCAGGAGGCAAAGACTTACGAATGCTTCTG
GATTAAATCGTTTCGGAAATTACATTTGGATGCGCTGGGCAATGAATATG
GATCTTGTGCCCTTTTACACTTTTGAATCTTTATTTACGACACCTTCCCA
GACACTGCAGGTGTACATGGTGCGTGTCGAAGCAACACTTGACAAAGTAA
AAGGTACATCTCGGCTCCCGGAGCAATCTGGCGATTTTAAGGCCAAAGAT
ATAAATTATGGTGTTTATACAAAATTGATAAAAATCCAAGAACTGTTCAC
ATTTGCAAGAGATGACAATTCAGTTCACATCGGCACACCCGTTTTTGGCC
ATAAAATATTCACAGATGTACCTCTGGTCCTGGTCTGCAAAATTTTTCAT
CAAGCAGAGAGGGGAAAGTGTGGAAAGAAAGGGTGTAGATTAAGGAACGA
TATTGAAAGCTTGTTATCAAGATTTGTATTCCCGTCTTTCATTCCGAACA
TAAGACGGGTTACGAGACAAAATTCCCTTCTCAGCTTAAAGAAGTAG

protein sequence of rna5534

>rna5534-protein ID=rna5534-protein|Name=rna5534|organism=Nannochloropsis gaditana|type=polypeptide|length=930bp
MAEGSATVKAVVSGDTLILQGRSTGGPPPERQMSLSSLMAPRVARGPTGM
AQEEPWGWAAREFLRRHCVGFQVSFKVDYTVPMLNNREFGTITLNGESLN
RTVVKEGWARVRLPRTGNESEASPELEELVRLEAEALAEKKGLHAGEAGE
GATREGVQWGPGVDTEAILQRIKGKPTRMTIEYVRDGGAFRALVLDSHTY
VNLSLAGITAPRVNFPPKTASAAGDGGAGATTVAAGTASKPEPYALESRN
FTETRLLHRDVDVVVGGVDKYGTLYGTISHPKGNISVELLKAGLARIVEF
SIDFTSRENILQYRLAERQAKAAQLRIWKGYVPPTVTGSKEFVGTVIEVV
GGDLLVVKVETGKEAGEERKISLASLRAPRQGNVKKGDRGEPWAAEAKEF
LREKIIGRSVVVTVEYEREIAVGERKEKRSYASVVIGKGAKKRSVAEMLV
KEGLAVVTRHRDEGRAENYDDLLFAETAAKAGKKGMFSGGPAPLPPRVTD
LSLDSKKARSYLPHLQREAAVRAVVEYVFSGSRFKVYIPSENCSVMLALT
SLRTPNPPRGSAVPGDKNARAGDPFGEDAKTHARQHLHQRTIEVSFADMD
KNGVALGSVSVLTGGGERLPFGLELVKLGLARVDERGTTCLPASFVNALQ
EAQVAAKAARRGIWSVPVEEAEEEEEVTVAQSEEPVEVSVSEIVDGVHFY
YQEASNTEVLAKVGEKMKALGAEGRSENAISFEPRKGNIVAALFDDGSGP
LWYRARVEDKLSMSNGGGFMVSFIDYGNKAIVGRSQVRTLDASFTAMPAQ
AKRAKLAFLRAPGLKDDFGHEAAVAFSRLAYGKVLRARVFGLERGTLLVS
LQEKGEDSSPATSMKTFNQLMVEEGLARLSKQADGVISKLGKSSAVNLVE
EMKEAQELARRGRIGMWRYGDVADSDDEDA

mRNA from alignment at CM002466.1:228443..231235-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5534 ID=rna5534|Name=rna5534|organism=Nannochloropsis gaditana|type=mRNA|length=2793bp|location=Sequence derived from alignment at CM002466.1:228443..231235- (Nannochloropsis gaditana)
ATGGCTGAAGGAAGTGCGACTGTCAAGGCCGTAGTAAGCGGAGATACGCT
CATTTTACAAGGCCGTTCTACAGGCGGGCCGCCCCCCGAAAGGCAGATGT
CTTTATCTTCACTCATGGCGCCGCGTGTGGCACGAGGCCCGACGGGGATG
GCCCAGGAGGAGCCATGGGGGTGGGCCGCACGGGAGTTCTTGCGCCGCCA
CTGCGTGGGCTTTCAGGTATCTTTTAAGGTCGATTACACCGTGCCTATGT
TAAACAATCGGGAGTTCGGCACCATCACTTTGAATGGAGAAAGTTTAAAT
CGCACAGTGGTGAAGGAGGGGTGGGCCCGTGTGCGCCTTCCTCGAACAGG
AAACGAGAGCGAGGCTAGTCCCGAGTTGGAGGAGCTGGTGCGACTTGAGG
CTGAGGCACTTGCAGAAAAGAAGGGTTTGCATGCCGGAGAAGCAGGAGAA
GGGGCAACTAGGGAAGGAGTTCAGTGGGGCCCGGGCGTCGACACAGAGGC
TATCCTGCAACGCATCAAGGGCAAGCCCACCCGGATGACAATCGAATATG
TACGCGACGGTGGCGCGTTTCGCGCATTGGTTCTAGATAGTCATACTTAT
GTGAATCTCTCCCTAGCCGGGATTACAGCCCCTCGCGTCAATTTCCCTCC
AAAAACAGCCTCTGCGGCTGGAGATGGTGGAGCCGGTGCAACAACAGTCG
CTGCAGGCACAGCGTCCAAGCCCGAGCCTTACGCTTTAGAGTCGAGAAAC
TTTACGGAAACTCGCCTCTTGCATCGAGACGTGGACGTCGTAGTGGGCGG
GGTAGACAAGTATGGGACGCTGTATGGCACAATCTCGCATCCCAAAGGGA
ACATCTCCGTTGAGCTCCTGAAGGCAGGCCTGGCGCGTATTGTGGAATTT
TCTATTGACTTCACGTCGCGTGAAAATATCTTGCAATATCGCTTGGCGGA
ACGACAGGCCAAAGCTGCCCAGCTGAGGATTTGGAAAGGATATGTCCCCC
CGACCGTAACAGGCTCGAAAGAGTTCGTGGGCACCGTGATCGAGGTTGTA
GGTGGAGATTTGCTTGTAGTCAAGGTAGAAACCGGAAAGGAGGCTGGAGA
GGAGCGGAAAATCTCTCTTGCCTCGCTTCGGGCTCCGCGTCAAGGTAACG
TCAAAAAAGGAGACAGGGGGGAACCTTGGGCAGCCGAAGCGAAAGAATTT
CTGCGGGAGAAGATAATTGGAAGGAGCGTGGTAGTAACGGTAGAGTATGA
AAGGGAGATCGCCGTTGGAGAAAGAAAGGAAAAGCGGTCTTATGCCTCGG
TCGTTATTGGTAAGGGAGCTAAAAAAAGGAGTGTGGCGGAGATGCTTGTC
AAGGAGGGGTTGGCTGTTGTGACACGGCACCGAGACGAAGGACGGGCCGA
GAATTATGATGACCTGCTCTTTGCGGAAACGGCGGCTAAAGCGGGGAAAA
AGGGAATGTTTTCGGGAGGACCTGCACCCCTCCCCCCCCGCGTGACTGAT
TTGAGCTTGGACTCTAAAAAGGCTCGCTCTTATCTGCCGCACTTGCAGCG
GGAGGCAGCTGTGCGCGCAGTGGTGGAATACGTTTTTTCGGGATCACGAT
TCAAAGTCTACATACCCTCTGAAAATTGCAGCGTGATGCTGGCATTGACT
TCTCTTCGGACCCCTAACCCTCCTCGTGGAAGTGCCGTGCCCGGAGACAA
GAACGCTCGCGCCGGCGATCCCTTTGGAGAAGATGCCAAGACTCACGCAC
GTCAGCATCTGCACCAGCGCACAATCGAAGTATCCTTTGCGGACATGGAT
AAAAATGGTGTGGCTCTAGGTAGCGTATCGGTCTTAACGGGTGGAGGAGA
ACGTTTGCCTTTCGGCCTCGAACTAGTCAAGCTGGGTTTGGCCAGAGTGG
ATGAAAGGGGAACGACTTGTTTGCCCGCGTCATTTGTCAACGCTCTACAG
GAGGCGCAGGTAGCAGCGAAAGCTGCCAGACGAGGCATATGGTCAGTGCC
GGTGGAGGAGGCGGAGGAAGAGGAGGAAGTGACGGTCGCACAGAGCGAGG
AGCCGGTGGAGGTCAGTGTCAGTGAGATCGTCGATGGAGTCCACTTCTAC
TACCAGGAGGCCAGCAATACGGAAGTTTTGGCGAAAGTTGGTGAGAAAAT
GAAGGCACTGGGAGCTGAAGGTAGGAGTGAAAATGCAATATCCTTTGAAC
CTCGTAAGGGCAACATCGTGGCTGCGCTTTTCGATGATGGAAGCGGACCC
TTGTGGTACCGTGCACGTGTGGAAGACAAATTATCCATGAGTAATGGAGG
GGGTTTTATGGTCTCGTTCATTGACTACGGAAACAAGGCTATAGTGGGAA
GGTCGCAAGTACGTACCCTCGACGCTTCTTTCACAGCCATGCCTGCGCAG
GCAAAGAGAGCGAAGCTAGCCTTCCTCCGGGCGCCAGGTCTCAAAGATGA
CTTCGGGCATGAAGCGGCCGTGGCCTTCAGTCGCTTGGCCTATGGGAAGG
TACTCCGGGCTCGAGTGTTCGGACTGGAAAGGGGAACGCTCTTGGTTTCC
TTGCAGGAGAAAGGGGAGGACTCCTCTCCCGCAACTTCAATGAAAACATT
CAATCAGTTGATGGTAGAGGAGGGACTAGCACGACTCTCCAAGCAAGCAG
ATGGAGTAATTTCAAAACTTGGCAAATCTTCGGCGGTAAATCTGGTGGAA
GAAATGAAAGAGGCGCAAGAACTTGCGCGGAGGGGCCGGATCGGGATGTG
GAGGTACGGGGACGTGGCAGATTCTGATGATGAAGACGCGTAG

Coding sequence (CDS) from alignment at CM002466.1:228443..231235-

>rna5534 ID=rna5534|Name=rna5534|organism=Nannochloropsis gaditana|type=CDS|length=2793bp|location=Sequence derived from alignment at CM002466.1:228443..231235- (Nannochloropsis gaditana)
ATGGCTGAAGGAAGTGCGACTGTCAAGGCCGTAGTAAGCGGAGATACGCT
CATTTTACAAGGCCGTTCTACAGGCGGGCCGCCCCCCGAAAGGCAGATGT
CTTTATCTTCACTCATGGCGCCGCGTGTGGCACGAGGCCCGACGGGGATG
GCCCAGGAGGAGCCATGGGGGTGGGCCGCACGGGAGTTCTTGCGCCGCCA
CTGCGTGGGCTTTCAGGTATCTTTTAAGGTCGATTACACCGTGCCTATGT
TAAACAATCGGGAGTTCGGCACCATCACTTTGAATGGAGAAAGTTTAAAT
CGCACAGTGGTGAAGGAGGGGTGGGCCCGTGTGCGCCTTCCTCGAACAGG
AAACGAGAGCGAGGCTAGTCCCGAGTTGGAGGAGCTGGTGCGACTTGAGG
CTGAGGCACTTGCAGAAAAGAAGGGTTTGCATGCCGGAGAAGCAGGAGAA
GGGGCAACTAGGGAAGGAGTTCAGTGGGGCCCGGGCGTCGACACAGAGGC
TATCCTGCAACGCATCAAGGGCAAGCCCACCCGGATGACAATCGAATATG
TACGCGACGGTGGCGCGTTTCGCGCATTGGTTCTAGATAGTCATACTTAT
GTGAATCTCTCCCTAGCCGGGATTACAGCCCCTCGCGTCAATTTCCCTCC
AAAAACAGCCTCTGCGGCTGGAGATGGTGGAGCCGGTGCAACAACAGTCG
CTGCAGGCACAGCGTCCAAGCCCGAGCCTTACGCTTTAGAGTCGAGAAAC
TTTACGGAAACTCGCCTCTTGCATCGAGACGTGGACGTCGTAGTGGGCGG
GGTAGACAAGTATGGGACGCTGTATGGCACAATCTCGCATCCCAAAGGGA
ACATCTCCGTTGAGCTCCTGAAGGCAGGCCTGGCGCGTATTGTGGAATTT
TCTATTGACTTCACGTCGCGTGAAAATATCTTGCAATATCGCTTGGCGGA
ACGACAGGCCAAAGCTGCCCAGCTGAGGATTTGGAAAGGATATGTCCCCC
CGACCGTAACAGGCTCGAAAGAGTTCGTGGGCACCGTGATCGAGGTTGTA
GGTGGAGATTTGCTTGTAGTCAAGGTAGAAACCGGAAAGGAGGCTGGAGA
GGAGCGGAAAATCTCTCTTGCCTCGCTTCGGGCTCCGCGTCAAGGTAACG
TCAAAAAAGGAGACAGGGGGGAACCTTGGGCAGCCGAAGCGAAAGAATTT
CTGCGGGAGAAGATAATTGGAAGGAGCGTGGTAGTAACGGTAGAGTATGA
AAGGGAGATCGCCGTTGGAGAAAGAAAGGAAAAGCGGTCTTATGCCTCGG
TCGTTATTGGTAAGGGAGCTAAAAAAAGGAGTGTGGCGGAGATGCTTGTC
AAGGAGGGGTTGGCTGTTGTGACACGGCACCGAGACGAAGGACGGGCCGA
GAATTATGATGACCTGCTCTTTGCGGAAACGGCGGCTAAAGCGGGGAAAA
AGGGAATGTTTTCGGGAGGACCTGCACCCCTCCCCCCCCGCGTGACTGAT
TTGAGCTTGGACTCTAAAAAGGCTCGCTCTTATCTGCCGCACTTGCAGCG
GGAGGCAGCTGTGCGCGCAGTGGTGGAATACGTTTTTTCGGGATCACGAT
TCAAAGTCTACATACCCTCTGAAAATTGCAGCGTGATGCTGGCATTGACT
TCTCTTCGGACCCCTAACCCTCCTCGTGGAAGTGCCGTGCCCGGAGACAA
GAACGCTCGCGCCGGCGATCCCTTTGGAGAAGATGCCAAGACTCACGCAC
GTCAGCATCTGCACCAGCGCACAATCGAAGTATCCTTTGCGGACATGGAT
AAAAATGGTGTGGCTCTAGGTAGCGTATCGGTCTTAACGGGTGGAGGAGA
ACGTTTGCCTTTCGGCCTCGAACTAGTCAAGCTGGGTTTGGCCAGAGTGG
ATGAAAGGGGAACGACTTGTTTGCCCGCGTCATTTGTCAACGCTCTACAG
GAGGCGCAGGTAGCAGCGAAAGCTGCCAGACGAGGCATATGGTCAGTGCC
GGTGGAGGAGGCGGAGGAAGAGGAGGAAGTGACGGTCGCACAGAGCGAGG
AGCCGGTGGAGGTCAGTGTCAGTGAGATCGTCGATGGAGTCCACTTCTAC
TACCAGGAGGCCAGCAATACGGAAGTTTTGGCGAAAGTTGGTGAGAAAAT
GAAGGCACTGGGAGCTGAAGGTAGGAGTGAAAATGCAATATCCTTTGAAC
CTCGTAAGGGCAACATCGTGGCTGCGCTTTTCGATGATGGAAGCGGACCC
TTGTGGTACCGTGCACGTGTGGAAGACAAATTATCCATGAGTAATGGAGG
GGGTTTTATGGTCTCGTTCATTGACTACGGAAACAAGGCTATAGTGGGAA
GGTCGCAAGTACGTACCCTCGACGCTTCTTTCACAGCCATGCCTGCGCAG
GCAAAGAGAGCGAAGCTAGCCTTCCTCCGGGCGCCAGGTCTCAAAGATGA
CTTCGGGCATGAAGCGGCCGTGGCCTTCAGTCGCTTGGCCTATGGGAAGG
TACTCCGGGCTCGAGTGTTCGGACTGGAAAGGGGAACGCTCTTGGTTTCC
TTGCAGGAGAAAGGGGAGGACTCCTCTCCCGCAACTTCAATGAAAACATT
CAATCAGTTGATGGTAGAGGAGGGACTAGCACGACTCTCCAAGCAAGCAG
ATGGAGTAATTTCAAAACTTGGCAAATCTTCGGCGGTAAATCTGGTGGAA
GAAATGAAAGAGGCGCAAGAACTTGCGCGGAGGGGCCGGATCGGGATGTG
GAGGTACGGGGACGTGGCAGATTCTGATGATGAAGACGCGTAG

Synonyms

Publications