rna5525, rna5525 (mRNA) Nannochloropsis gaditana

Overview
Namerna5525
Unique Namerna5525
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length255
Alignment locationCM002466.1:200119..201369 +

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Properties
Property NameValue
Productesterase lipase
Orig transcript idgnl|cribi|Naga_100016g85.2911.mrna
Orig protein idgnl|cribi|Naga_100016g85.2911
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:200119..201369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100016g85gene5338Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5525rna5525-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25102.1cds5511Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5525 ID=rna5525|Name=rna5525|organism=Nannochloropsis gaditana|type=mRNA|length=255bp
ATGGACGCAGCAAAGTCAAGGAGCAGGGGGAGCAGGCCTATCTTTGTCTC
CTCGTGTTTTTGGAGCGTGACTCGAGAGTTCTACCGATACTTGCTCTCAA
GCCCTGGCCCGTCCTCAACATTGCATTCAGCAAAGCGACCATCATGTATC
TGTAACCGGAGAGTTCATCTTCCCGCACCTCAAGCAGCATCTGCAGCTCT
GAGATCCTTGGAGGGACGCCTGACGTGCCTTGTGACGCGTCTTGTGAGAC
GATGA
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protein sequence of rna5525

>rna5525-protein ID=rna5525-protein|Name=rna5525|organism=Nannochloropsis gaditana|type=polypeptide|length=416bp
MNALLCPRWCSVRPAWLVFPTSASPVLIIRHARSLFPFSFVLLETSISPH
VIQVLYLMQRSRSLPIKPSFRPSLSQLHRPHSTPGGPSDPSLSGIYAWFD
IPYHHDHLSPLPPDPKHHLDVFLSSSGPFPRRPQPVFLFVHGGLWMRGDR
RHPYRPHLYSNVGLACARANVVGVVISYRLAPAVTVMEQVRDVRRALEWT
HKEVGRFGGDPGRIFLGGVSAGAHLCATLLTEERSEIKNKGVQGFVGLSG
VYNIERLWRLGGGGGGEGEGERGGEGGGRGGLGLSSMMIPMIFGDDETNW
PRASPVHAIRRARRRREEGGEAGSGGSSAALELVPLLLLNAERDFHLNED
TEELLKELRGGREGGDVERARAVVPGTDHLSLVEGLGAKRGKEEEGREGE
RSVLEDLVFSFIHRHA
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mRNA from alignment at CM002466.1:200119..201369+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5525 ID=rna5525|Name=rna5525|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at CM002466.1:200119..201369+ (Nannochloropsis gaditana)
ATGAATGCACTACTTTGCCCTCGTTGGTGCTCAGTACGCCCCGCATGGCT
CGTCTTTCCTACCTCAGCCAGTCCTGTCCTCATTATTCGTCATGCGAgat
ccctttttcccttttcttttgtccTCTTAGAGACATCAATTTCCCCTCAT
GTAATCCAGGTACTCTATTTAATGCAGCGTTCACGGTCGCTCCCTATTAA
GCcgtccttccgtccctccctcagccagctccaccgccctcACAGCACTC
CGGGGGGTCCTTCCGACCCGTCTCTTTCAGGCATCTATGCCTGGTTTGAC
ATCCCCTACCATCATGACCACTTAtccccacttcctcccgatCCTAAGCA
CCATTTGGACGTATTTCTTTCATCCTctggccctttccctcgccgtcCAc
agcccgtcttcctcttcgttcACGGAGGCCTCTGGATGCGTGGAGACCGG
CGACACCCCTACCGCCCCCACCTGTACAGCAACGTCGGCCTGGCTTGTGC
TAGGGCTAATGTCGTCGGCGTGGTAATTTCGTATCGGCTCGCTCCTGCCG
TGACCGTCATGGAGCAAGTCAGGGACGTGAGGAGGGCCTTGGAGTGGACG
cacaaggaggtggggaggttcgGGGGAGATCCCGGGCGGATCTTCCTGGG
TGGGGTGTCAGCAGGGGCACATCTGTGTGCGACGCTGTTGACGGAAGAAA
GGAGTGAGATAAAGAATAAGGGTGTGCAAGGCTTTGTGGGTCTGTCCGGC
GTCTACAACATTGAGAGGCTCTGGCggttgggaggaggggggggagggga
aggagagggagagagaggaggagaaggaggagggagggggggtttGGGCC
TCTCGTCCATGATGATCCCCATGATCTTCGGGGATGATGAGACAAATTGG
CCCCGCGCGTCCCCTGTGCACGCGAtacggagggcgaggaggaggaggga
ggagggaggagaggcggggagcggggggagttCAGCTGCCTTGGAGCTGG
TACCCCTTTTGTTGCTGAATGCAGAGAGGGATTTTCATCTGAATGAAGAC
ACGGAGGAGCTGTTGAAGGAGctaaggggagggagggaggggggggacgt
cgagagggcgagggccgtGGTCCCGGGGACAGACCACCTGTCTCTGGTCG
AGGGTTTGGGCGCGAAgcggggcaaggaggaggaaggaagggagggagaa
agatcGGTGCTAGAAGATCTCGTGTTCTCCTTCATCCACAGACATGCCTA
G
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Coding sequence (CDS) from alignment at CM002466.1:200119..201369+

>rna5525 ID=rna5525|Name=rna5525|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002466.1:200119..201369+ (Nannochloropsis gaditana)
ATGAATGCACTACTTTGCCCTCGTTGGTGCTCAGTACGCCCCGCATGGCT
CGTCTTTCCTACCTCAGCCAGTCCTGTCCTCATTATTCGTCATGCGAgat
ccctttttcccttttcttttgtccTCTTAGAGACATCAATTTCCCCTCAT
GTAATCCAGGTACTCTATTTAATGCAGCGTTCACGGTCGCTCCCTATTAA
GCcgtccttccgtccctccctcagccagctccaccgccctcACAGCACTC
CGGGGGGTCCTTCCGACCCGTCTCTTTCAGGCATCTATGCCTGGTTTGAC
ATCCCCTACCATCATGACCACTTAtccccacttcctcccgatCCTAAGCA
CCATTTGGACGTATTTCTTTCATCCTctggccctttccctcgccgtcCAc
agcccgtcttcctcttcgttcACGGAGGCCTCTGGATGCGTGGAGACCGG
CGACACCCCTACCGCCCCCACCTGTACAGCAACGTCGGCCTGGCTTGTGC
TAGGGCTAATGTCGTCGGCGTGGTAATTTCGTATCGGCTCGCTCCTGCCG
TGACCGTCATGGAGCAAGTCAGGGACGTGAGGAGGGCCTTGGAGTGGACG
cacaaggaggtggggaggttcgGGGGAGATCCCGGGCGGATCTTCCTGGG
TGGGGTGTCAGCAGGGGCACATCTGTGTGCGACGCTGTTGACGGAAGAAA
GGAGTGAGATAAAGAATAAGGGTGTGCAAGGCTTTGTGGGTCTGTCCGGC
GTCTACAACATTGAGAGGCTCTGGCggttgggaggaggggggggagggga
aggagagggagagagaggaggagaaggaggagggagggggggtttGGGCC
TCTCGTCCATGATGATCCCCATGATCTTCGGGGATGATGAGACAAATTGG
CCCCGCGCGTCCCCTGTGCACGCGAtacggagggcgaggaggaggaggga
ggagggaggagaggcggggagcggggggagttCAGCTGCCTTGGAGCTGG
TACCCCTTTTGTTGCTGAATGCAGAGAGGGATTTTCATCTGAATGAAGAC
ACGGAGGAGCTGTTGAAGGAGctaaggggagggagggaggggggggacgt
cgagagggcgagggccgtGGTCCCGGGGACAGACCACCTGTCTCTGGTCG
AGGGTTTGGGCGCGAAgcggggcaaggaggaggaaggaagggagggagaa
agatcGGTGCTAGAAGATCTCGTGTTCTCCTTCATCCACAGACATGCCTA
G
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Synonyms
Publications