rna5521, rna5521 (mRNA) Nannochloropsis gaditana

Overview
Namerna5521
Unique Namerna5521
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2121
Alignment locationCM002466.1:188791..189785 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100490g7.5288.mrna
Orig protein idgnl|cribi|Naga_100490g7.5288
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:188791..189785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100490g7gene5333Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5521rna5521-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25167.1cds5507Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5521 ID=rna5521|Name=rna5521|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp
ATGCCGTCAGGGTGGGCTGGTTTAGCGGCCAGCATAGTCCGCGGTGGACA
ACAACAAGCACAAACACAACAAGGAGAGCATGGAAGTCGAAAGCAAGAAG
AGGACGTGCACCTGGGGGGTACTGGGACAGGGGGTCCCATTGGTATCGCT
GCCCTCCCACCAGGCCACGCACCGCCCTCACACGGCCATCGTCAGGATCA
GAAGGCGTACTTCCGGCACCAGCACGTGCACGAAGCGCAAAGGCACATGG
ACGCAATGGTAGTGGCCGCAGATGCGTCAGGTACAATGTTAACAGAGGAG
CGAGGAGACACGCAAGTGAAACCTCATTACTCTTTTGGTGCCCCAAAGGA
CAATGTCGCTTGGCCTGTGCAACCCAATGAGTCAACTTTCGAGAAGGGCA
AGCATCCAGGTTTGCCGTGTCAATCCCAGCAGGCGCCTACAGGCGCTGGG
TCCGCGGAACCGATTGATGCGATGGTGTGCAGCAGCAGTAGCAGCAGCCT
AAGCAGTAACGCGAGTCATGGGGCCCCACGGCGCAGACGCCGATCGTCGC
AGACACGGCCATTGAACCGCCTGTCCATACAGCTGATTGAGACGTACAAG
GCTATCAACACCCAGTATTACGAGCAGAAGGCCCTGCGCTTGGAGAGGGA
AGCGGCTGCGGCGAAAGCAACGGCCTCCGCTCACAGCCAAAAAGACTCGG
ACTCTGCCCTTCGAGCACACCCCAACACAAACCCTCCGTCCTCCAATAAA
AGCACGGCAACGGCGGCGGTAGCGTCCTCCTCCACCTCTTCCTCCCTCCC
GGCCTCCCAGCCCCCGGCTGCCGCTGGCCCGTCTGGGAAGGGCGTCTACA
ACAGCGGGTGGGACGACGAGCACTACGACTACATTGTCCAACGCGAGGAG
GTCCTCCGGGACCGGTACGTACTCAAGAATCGGATCGGCAAGGGTTCGTT
CGGGCAAGTGGTGCGAGGACTGGACCGGAGCACGGGGCGGGAGGTGGCGG
TGAAGATCATCAAGAGCCGCAAGCCCTTCATGGTGCAGGCGAAAACAGAG
GTGGATCTCCTGGAGGCCCTCAAACAGATGGACGCCACGGACGACTTCAA
CATGGTGCGCCTGCAAGAGCACTTCATCCACCGGAACCACCAGGTCCTGG
TCTTCGAGATGCTCTCCTACAATCTCTACGACCTCCTCAAGTACACCAAG
TTCGCCGGGGTCTCGCTCACGCTCCTCCGGAAGTTCGCCAAGCAGATCCT
CAAGGCCCTGGACTTCCTGGCCCGCCCAGACGTGGACATCATCCACTGCG
ACCTCAAACCCGAGAACATTCTGCTGCGCCACCCCAAGCGGAGTGGGATC
AAGCTGATCGACTTTGGCTCCTCCTGCCGCAGCCACAAGCGCATGTATTC
CTACATACAGTCCCGCTTCTACCGCTCTCCCGAGGTCATGCTCGGCCTCC
CTTACTCGGTGGCTATCGACATGTGGTCTCTGGGCTGCGTCCTGGTGGAA
ATGCACACGGGGGAGCCGCTCTTCGGCGGGACGGACCAGCACGATCAGAT
GCGTCGCCTGGTGGAGGTGCTCGGCCTTCCCCCCCTTTCCATGCTGGAAA
AGGCGCCTGCGGCGGCGCGCGACACGCTCTTCGAATGCCTCCCTGAGGCC
CCGTCGAGGGGTACAGCCCAGTGGCGCCTCAAGCCGTCGGCTTCGGGGGC
GGGCGCTCAAAGCAGCAGAGCCTGGAAAGAGCCCGCTTCCCCAGAAACGC
GGCTGGCGGAGATCGTCGGCATGCACACAGGGGGGCCGCAGGGCCGACGC
GCGGACGATCCGGGTCACCAGGTCGCCCACTACCAGGTCTTTGTGGACCT
GGTCTTGCGCATGCTGCACTACGACCCTGCGCTTCGTATCACGCCCAGCG
AGGCGCTCCGGCATCCCTTCGTCACGGGAGCCGAGGCCCTGGCGGCGCCT
GTGAAAAGGGTGGAGAGAGTGGAGGCAGGCAAAGACAGCGGAGGTCAATC
GCAGCAGCCACAACCGCAATCCAGATCTCCCAGGGTGACGGCCACCACTG
CCCATGCGGTGCAGCACAATCAACTTCCGCCCTTGATGACCTCTGGCTTC
GACTCGCAAGCATACACGTAG
back to top

protein sequence of rna5521

>rna5521-protein ID=rna5521-protein|Name=rna5521|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MLSYLIAFLLFLLGLKLWEMHQDNPSREQAKAHICHKKKKKGAKADEMPS
AGAGGSNSSTRTAKITAGHYTKGGEAAICVDATQRESSLPSTTVVKLSST
AKLRKVKRKGTAESQSKEEVSESRNGKLSCENGASEATGPTMGSPTNSAK
RKHGRQKHADDGEQGQESQGSSTGLWSDLIAAAAVPPKDLSTEARESTRV
PADTGQSLAQKTEEEERRRRRERRKRRKKEKENVEAELDPWAAFASALLE
AEIPQGAYNAGSVPGGILLRRSLEEKPRKRKGKPGRRPGTLGARAAGAGG
ILGSGRGEYTRA
back to top

mRNA from alignment at CM002466.1:188791..189785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5521 ID=rna5521|Name=rna5521|organism=Nannochloropsis gaditana|type=mRNA|length=995bp|location=Sequence derived from alignment at CM002466.1:188791..189785+ (Nannochloropsis gaditana)
ATGCTGAGTTACCTGATAGCTTTTCTACTTTTCCTGCTTGGGCTCAAGCT
CTGGGAAATGCACCAAGACAATCCTTCCAGAGAGCAAGCAAAGGCACACA
TATGtcacaagaagaaaaagaaaggagccAAGGCGGATGAGATGCCTAGT
GCTGGTGCAGGTGgttccaactcctccactAGGACAGCGAAGATCACGGC
GGGGCATTACACCAAAGGGGGCGAAGCCGCCATCTGCGTGGATGCTACCC
AGCGGGagtcatcccttccctcgacCACAGTTGTGAAGCTCTCTTCGACT
GCAAAGCTGCGGAAAGTGAAGCGAAAAGGAACAGCCGAATCACAATCGAA
AGAGGAAGTGTCCGAGAGCAGGAATGGGAAGCTTTCTTGTGAAAACGGCG
CCTCGGAAGCGACGGGTCCTACCATGGGCTCCCCGACAAATTCAGCGAAA
CGGAAACACGGGAGGCAAAAACATGCAGACGACGGGGAGCAGGGCCAGGA
AAGTCAGGGCTCCTCTACGGGCTTGTGGAGCGATTTGATTGCGGCCGCGG
CGGTCCCTCCCAAGGACCTATCCACAGAGGCACGAGAATCAACACGTGTA
CCAGCAGACACTGGACAATCTTTGGCACAAAaaaccgaggaggaggagcg
gcgacGACGTCGGGAGCGGAGAAAGCGccggaagaaagagaaggaaaatg
tggaggcggagctggatCCTTGGGCGGCCTTTGCCTCTGCCCTTTTAGAG
GCGGAGATCCCTCAGGGCGCCTACAACGCCGGATCCGTCCCCGGTGGAAT
TTTGCTGCGTCGAtccctggaggagaagccgaggaagaggaaagggaagc
cggGAAGGCGGGTGAGCTTCGCGGCAGACGCCACGCCCATCCCGGACACG
ATGTATGTGAACGCCAGCCGGGAACGTTGGGAGCGAGAGCagcgggagct
ggaggcaTATTGGggtcgggaaggggggaataCACAAGAGCATGA
back to top

Coding sequence (CDS) from alignment at CM002466.1:188791..189785+

>rna5521 ID=rna5521|Name=rna5521|organism=Nannochloropsis gaditana|type=CDS|length=1878bp|location=Sequence derived from alignment at CM002466.1:188791..189785+ (Nannochloropsis gaditana)
ATGCTGAGTTACCTGATAGCTTTTCTACTTTTCCTGCTTGGGCTCAAGCT
CTGGGAAATGCACCAAGACAATCCTTCCAGAGAGCAAGCAAAGGCACACA
TATGtcacaagaagaaaaagaaaggagccAAGGCGGATGAGATGCCTAGT
GCTGGTGCAGGTGgttccaactcctccactAGGACAGCGAAGATCACGGC
GGGGCATTACACCAAAGGGGGCGAAGCCGCCATCTGCGTGGATGCTACCC
AGCGGGagtcatcccttccctcgacCACAGTTGTGAAGCTCTCTTCGACT
GCAAAGCTGCGGAAAGTGAAGCGAAAAGGAACAGCCGAATCACAATCGAA
AGAGGAAGTGTCCGAGAGCAGGAATGGGAAGCTTTCTTGTGAAAACGGCG
CCTCGGAAGCGACGGGTCCTACCATGGGCTCCCCGACAAATTCAGCGAAA
CGGAAACACGGGAGGCAAAAACATGCAGACGACGGGGAGCAGGGCCAGGA
AAGTCAGGGCTCCTCTACGGGCTTGTGGAGCGATTTGATTGCGGCCGCGG
CGGTCCCTCCCAAGGACCTATCCACAGAGGCACGAGAATCAACACGTGTA
CCAGCAGACACTGGACAATCTTTGGCACAAAaaaccgaggaggaggagcg
gcgacGACGTCGGGAGCGGAGAAAGCGccggaagaaagagaaggaaaatg
tggaggcggagctggatCCTTGGGCGGCCTTTGCCTCTGCCCTTTTAGAG
GCGGAGATCCCTCAGGGCGCCTACAACGCCGGATCCGTCCCCGGTGGAAT
TTTGCTGCGTCGAtccctggaggagaagccgaggaagaggaaagggaagc
cggGAAGGCGGCCGGGAACGTTGGGAGCGAGAGCagcgggagctggaggc
aTATTGGggtcgggaaggggggaataCACAAGAGCATGAATGCTGAGTTA
CCTGATAGCTTTTCTACTTTTCCTGCTTGGGCTCAAGCTCTGGGAAATGC
ACCAAGACAATCCTTCCAGAGAGCAAGCAAAGGCACACATATGtcacaag
aagaaaaagaaaggagccAAGGCGGATGAGATGCCTAGTGCTGGTGCAGG
TGgttccaactcctccactAGGACAGCGAAGATCACGGCGGGGCATTACA
CCAAAGGGGGCGAAGCCGCCATCTGCGTGGATGCTACCCAGCGGGagtca
tcccttccctcgacCACAGTTGTGAAGCTCTCTTCGACTGCAAAGCTGCG
GAAAGTGAAGCGAAAAGGAACAGCCGAATCACAATCGAAAGAGGAAGTGT
CCGAGAGCAGGAATGGGAAGCTTTCTTGTGAAAACGGCGCCTCGGAAGCG
ACGGGTCCTACCATGGGCTCCCCGACAAATTCAGCGAAACGGAAACACGG
GAGGCAAAAACATGCAGACGACGGGGAGCAGGGCCAGGAAAGTCAGGGCT
CCTCTACGGGCTTGTGGAGCGATTTGATTGCGGCCGCGGCGGTCCCTCCC
AAGGACCTATCCACAGAGGCACGAGAATCAACACGTGTACCAGCAGACAC
TGGACAATCTTTGGCACAAAaaaccgaggaggaggagcggcgacGACGTC
GGGAGCGGAGAAAGCGccggaagaaagagaaggaaaatgtggaggcggag
ctggatCCTTGGGCGGCCTTTGCCTCTGCCCTTTTAGAGGCGGAGATCCC
TCAGGGCGCCTACAACGCCGGATCCGTCCCCGGTGGAATTTTGCTGCGTC
GAtccctggaggagaagccgaggaagaggaaagggaagccggGAAGGCGG
CCGGGAACGTTGGGAGCGAGAGCagcgggagctggaggcaTATTGGggtc
gggaaggggggaataCACAAGAGCATGA
back to top
Synonyms
Publications