rna5520, rna5520 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5520
Unique Name	rna5520
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	315
Alignment location	CM002466.1:185857..187977 -

Link to JBrowse

Properties


Property Name	Value
Product	dual specificity tyrosine-phosphorylation-regulated kinase
Orig transcript id	gnl\|cribi\|Naga_100490g6.5287.mrna
Orig protein id	gnl\|cribi\|Naga_100490g6.5287
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:185857..187977 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100490g6	gene5332	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25166.1	cds5506	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5520	rna5520-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:185857..187977-
coding sequence from alignment at CM002466.1:185857..187977-

mRNA sequence

>rna5520 ID=rna5520|Name=rna5520|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGCATCATTACTGTGTCTTTCTTGTACTTGATGTGATTTATTCATTACT
TAGGCGAGAGAAGGAGAAAGAAGAGATGCTGGGGGACGTAATACCAGTTG
GCAGCATTGCTGCTGGAGACAAGGTTATCATCCTAGAGTACTGCATTGCC
TCTGACCAGCTGCGTGCCGTCGACGCGCGTTTACCGCTTTTCCAAATGGA
AAGGAAGTCCCTCCTCGACAATAGAGGAAGTCAAAGGAGTTGGAGACCTC
CCGTGTGCATGGGGGGAGAGAGAGGGCAGTCACGTCTCACTACATCACCG
ACTTTTGTCTTTTGA

protein sequence of rna5520

>rna5520-protein ID=rna5520-protein|Name=rna5520|organism=Nannochloropsis gaditana|type=polypeptide|length=706bp
MPSGWAGLAASIVRGGQQQAQTQQGEHGSRKQEEDVHLGGTGTGGPIGIA
ALPPGHAPPSHGHRQDQKAYFRHQHVHEAQRHMDAMVVAADASGTMLTEE
RGDTQVKPHYSFGAPKDNVAWPVQPNESTFEKGKHPGLPCQSQQAPTGAG
SAEPIDAMVCSSSSSSLSSNASHGAPRRRRRSSQTRPLNRLSIQLIETYK
AINTQYYEQKALRLEREAAAAKATASAHSQKDSDSALRAHPNTNPPSSNK
STATAAVASSSTSSSLPASQPPAAAGPSGKGVYNSGWDDEHYDYIVQREE
VLRDRYVLKNRIGKGSFGQVVRGLDRSTGREVAVKIIKSRKPFMVQAKTE
VDLLEALKQMDATDDFNMVRLQEHFIHRNHQVLVFEMLSYNLYDLLKYTK
FAGVSLTLLRKFAKQILKALDFLARPDVDIIHCDLKPENILLRHPKRSGI
KLIDFGSSCRSHKRMYSYIQSRFYRSPEVMLGLPYSVAIDMWSLGCVLVE
MHTGEPLFGGTDQHDQMRRLVEVLGLPPLSMLEKAPAAARDTLFECLPEA
PSRGTAQWRLKPSASGAGAQSSRAWKEPASPETRLAEIVGMHTGGPQGRR
ADDPGHQVAHYQVFVDLVLRMLHYDPALRITPSEALRHPFVTGAEALAAP
VKRVERVEAGKDSGGQSQQPQPQSRSPRVTATTAHAVQHNQLPPLMTSGF
DSQAYT

mRNA from alignment at CM002466.1:185857..187977-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5520 ID=rna5520|Name=rna5520|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp|location=Sequence derived from alignment at CM002466.1:185857..187977- (Nannochloropsis gaditana)
ATGCCGTCAGGGTGGGCTGGTTTAGCGGCCAGCATAGTCCGCGGTGGACA
ACAACAAGCACAAACACAACAAGGAGAGCATGGAAGTCGAAAGCAAGAAG
AGGACGTGCACCTGGGGGGTACTGGGACAGGGGGTCCCATTGGTATCGCT
GCCCTCCCACCAGGCCACGCACCGCCCTCACACGGCCATCGTCAGGATCA
GAAGGCGTACTTCCGGCACCAGCACGTGCACGAAGCGCAAAGGCACATGG
ACGCAATGGTAGTGGCCGCAGATGCGTCAGGTACAATGTTAACAGAGGAG
CGAGGAGACACGCAAGTGAAACCTCATTACTCTTTTGGTGCCCCAAAGGA
CAATGTCGCTTGGCCTGTGCAACCCAATGAGTCAACTTTCGAGAAGGGCA
AGCATCCAGGTTTGCCGTGTCAATCCCAGCAGGCGCCTACAGGCGCTGGG
TCCGCGGAACCGATTGATGCGATGGTGTGCAGCAGCAGTAGCAGCAGCCT
AAGCAGTAACGCGAGTCATGGGGCCCCACGGCGCAGACGCCGATCGTCGC
AGACACGGCCATTGAACCGCCTGTCCATACAGCTGATTGAGACGTACAAG
GCTATCAACACCCAGTATTACGAGCAGAAGGCCCTGCGCTTGGAGAGGGA
AGCGGCTGCGGCGAAAGCAACGGCCTCCGCTCACAGCCAAAAAGACTCGG
ACTCTGCCCTTCGAGCACACCCCAACACAAACCCTCCGTCCTCCAATAAA
AGCACGGCAACGGCGGCGGTAGCGTCCTCCTCCACCTCTTCCTCCCTCCC
GGCCTCCCAGCCCCCGGCTGCCGCTGGCCCGTCTGGGAAGGGCGTCTACA
ACAGCGGGTGGGACGACGAGCACTACGACTACATTGTCCAACGCGAGGAG
GTCCTCCGGGACCGGTACGTACTCAAGAATCGGATCGGCAAGGGTTCGTT
CGGGCAAGTGGTGCGAGGACTGGACCGGAGCACGGGGCGGGAGGTGGCGG
TGAAGATCATCAAGAGCCGCAAGCCCTTCATGGTGCAGGCGAAAACAGAG
GTGGATCTCCTGGAGGCCCTCAAACAGATGGACGCCACGGACGACTTCAA
CATGGTGCGCCTGCAAGAGCACTTCATCCACCGGAACCACCAGGTCCTGG
TCTTCGAGATGCTCTCCTACAATCTCTACGACCTCCTCAAGTACACCAAG
TTCGCCGGGGTCTCGCTCACGCTCCTCCGGAAGTTCGCCAAGCAGATCCT
CAAGGCCCTGGACTTCCTGGCCCGCCCAGACGTGGACATCATCCACTGCG
ACCTCAAACCCGAGAACATTCTGCTGCGCCACCCCAAGCGGAGTGGGATC
AAGCTGATCGACTTTGGCTCCTCCTGCCGCAGCCACAAGCGCATGTATTC
CTACATACAGTCCCGCTTCTACCGCTCTCCCGAGGTCATGCTCGGCCTCC
CTTACTCGGTGGCTATCGACATGTGGTCTCTGGGCTGCGTCCTGGTGGAA
ATGCACACGGGGGAGCCGCTCTTCGGCGGGACGGACCAGCACGATCAGAT
GCGTCGCCTGGTGGAGGTGCTCGGCCTTCCCCCCCTTTCCATGCTGGAAA
AGGCGCCTGCGGCGGCGCGCGACACGCTCTTCGAATGCCTCCCTGAGGCC
CCGTCGAGGGGTACAGCCCAGTGGCGCCTCAAGCCGTCGGCTTCGGGGGC
GGGCGCTCAAAGCAGCAGAGCCTGGAAAGAGCCCGCTTCCCCAGAAACGC
GGCTGGCGGAGATCGTCGGCATGCACACAGGGGGGCCGCAGGGCCGACGC
GCGGACGATCCGGGTCACCAGGTCGCCCACTACCAGGTCTTTGTGGACCT
GGTCTTGCGCATGCTGCACTACGACCCTGCGCTTCGTATCACGCCCAGCG
AGGCGCTCCGGCATCCCTTCGTCACGGGAGCCGAGGCCCTGGCGGCGCCT
GTGAAAAGGGTGGAGAGAGTGGAGGCAGGCAAAGACAGCGGAGGTCAATC
GCAGCAGCCACAACCGCAATCCAGATCTCCCAGGGTGACGGCCACCACTG
CCCATGCGGTGCAGCACAATCAACTTCCGCCCTTGATGACCTCTGGCTTC
GACTCGCAAGCATACACGTAG

Coding sequence (CDS) from alignment at CM002466.1:185857..187977-

>rna5520 ID=rna5520|Name=rna5520|organism=Nannochloropsis gaditana|type=CDS|length=2121bp|location=Sequence derived from alignment at CM002466.1:185857..187977- (Nannochloropsis gaditana)
ATGCCGTCAGGGTGGGCTGGTTTAGCGGCCAGCATAGTCCGCGGTGGACA
ACAACAAGCACAAACACAACAAGGAGAGCATGGAAGTCGAAAGCAAGAAG
AGGACGTGCACCTGGGGGGTACTGGGACAGGGGGTCCCATTGGTATCGCT
GCCCTCCCACCAGGCCACGCACCGCCCTCACACGGCCATCGTCAGGATCA
GAAGGCGTACTTCCGGCACCAGCACGTGCACGAAGCGCAAAGGCACATGG
ACGCAATGGTAGTGGCCGCAGATGCGTCAGGTACAATGTTAACAGAGGAG
CGAGGAGACACGCAAGTGAAACCTCATTACTCTTTTGGTGCCCCAAAGGA
CAATGTCGCTTGGCCTGTGCAACCCAATGAGTCAACTTTCGAGAAGGGCA
AGCATCCAGGTTTGCCGTGTCAATCCCAGCAGGCGCCTACAGGCGCTGGG
TCCGCGGAACCGATTGATGCGATGGTGTGCAGCAGCAGTAGCAGCAGCCT
AAGCAGTAACGCGAGTCATGGGGCCCCACGGCGCAGACGCCGATCGTCGC
AGACACGGCCATTGAACCGCCTGTCCATACAGCTGATTGAGACGTACAAG
GCTATCAACACCCAGTATTACGAGCAGAAGGCCCTGCGCTTGGAGAGGGA
AGCGGCTGCGGCGAAAGCAACGGCCTCCGCTCACAGCCAAAAAGACTCGG
ACTCTGCCCTTCGAGCACACCCCAACACAAACCCTCCGTCCTCCAATAAA
AGCACGGCAACGGCGGCGGTAGCGTCCTCCTCCACCTCTTCCTCCCTCCC
GGCCTCCCAGCCCCCGGCTGCCGCTGGCCCGTCTGGGAAGGGCGTCTACA
ACAGCGGGTGGGACGACGAGCACTACGACTACATTGTCCAACGCGAGGAG
GTCCTCCGGGACCGGTACGTACTCAAGAATCGGATCGGCAAGGGTTCGTT
CGGGCAAGTGGTGCGAGGACTGGACCGGAGCACGGGGCGGGAGGTGGCGG
TGAAGATCATCAAGAGCCGCAAGCCCTTCATGGTGCAGGCGAAAACAGAG
GTGGATCTCCTGGAGGCCCTCAAACAGATGGACGCCACGGACGACTTCAA
CATGGTGCGCCTGCAAGAGCACTTCATCCACCGGAACCACCAGGTCCTGG
TCTTCGAGATGCTCTCCTACAATCTCTACGACCTCCTCAAGTACACCAAG
TTCGCCGGGGTCTCGCTCACGCTCCTCCGGAAGTTCGCCAAGCAGATCCT
CAAGGCCCTGGACTTCCTGGCCCGCCCAGACGTGGACATCATCCACTGCG
ACCTCAAACCCGAGAACATTCTGCTGCGCCACCCCAAGCGGAGTGGGATC
AAGCTGATCGACTTTGGCTCCTCCTGCCGCAGCCACAAGCGCATGTATTC
CTACATACAGTCCCGCTTCTACCGCTCTCCCGAGGTCATGCTCGGCCTCC
CTTACTCGGTGGCTATCGACATGTGGTCTCTGGGCTGCGTCCTGGTGGAA
ATGCACACGGGGGAGCCGCTCTTCGGCGGGACGGACCAGCACGATCAGAT
GCGTCGCCTGGTGGAGGTGCTCGGCCTTCCCCCCCTTTCCATGCTGGAAA
AGGCGCCTGCGGCGGCGCGCGACACGCTCTTCGAATGCCTCCCTGAGGCC
CCGTCGAGGGGTACAGCCCAGTGGCGCCTCAAGCCGTCGGCTTCGGGGGC
GGGCGCTCAAAGCAGCAGAGCCTGGAAAGAGCCCGCTTCCCCAGAAACGC
GGCTGGCGGAGATCGTCGGCATGCACACAGGGGGGCCGCAGGGCCGACGC
GCGGACGATCCGGGTCACCAGGTCGCCCACTACCAGGTCTTTGTGGACCT
GGTCTTGCGCATGCTGCACTACGACCCTGCGCTTCGTATCACGCCCAGCG
AGGCGCTCCGGCATCCCTTCGTCACGGGAGCCGAGGCCCTGGCGGCGCCT
GTGAAAAGGGTGGAGAGAGTGGAGGCAGGCAAAGACAGCGGAGGTCAATC
GCAGCAGCCACAACCGCAATCCAGATCTCCCAGGGTGACGGCCACCACTG
CCCATGCGGTGCAGCACAATCAACTTCCGCCCTTGATGACCTCTGGCTTC
GACTCGCAAGCATACACGTAG

Synonyms

Publications