rna552, rna552 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna552
Unique Name	rna552
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2001
Alignment location	CM002455.1:1376452..1378262 +

Link to JBrowse

Properties


Property Name	Value
Product	hydroxyacylglutathione mitochondrial
Orig transcript id	gnl\|cribi\|Naga_100994g1.6014.mrna
Orig protein id	gnl\|cribi\|Naga_100994g1.6014
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1376452..1378262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100994g1	gene533	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna552	rna552-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30120.1	cds552	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1376452..1378262+
coding sequence from alignment at CM002455.1:1376452..1378262+

mRNA sequence

>rna552 ID=rna552|Name=rna552|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp
ACAGGGGAAGGGCAAGCAAGCTGCACTGGAAAAGAAAAGTGACAATTCCG
GCAAAGCGCTCTCTGCTTTCACATATATATACTACGACCTTGGACGCCTG
AATGCGAAGTTGGGCAGGGCAATGGGACTTCCTCTTTCTGCTCTGTATCA
TAATTGTTCCCACGAGCCATGCTCTTGTCGCAAGGGCCCTTTCGAATCAC
CCAAAACTCGCGACATGCCACCATGCTCGTCCTCGTCATCCCTCCCTTCT
TCCTCGATCCCTGTGTGCATCTGCCACGCCATCGGCCCCCGCATCCTTCC
AACTTTCTCGCGATGACGCGGCACTTGACGCCTTTCGACACTGGTTAAAT
GTGAAGGGAGGCATTGACTTAAGCGCCTCCTCTTTAGGGCTGCGTCGGTT
GGCCCACGACGACGAAAATTCTCCGGGAAATGCCGACCTGGAGCTCTTTA
CGACCCGCCCCATTGAAAAGGATCAGATCCTGCTGGCAATCCCTCCGTCC
ATCGTCCTCACGTCGGAATTGCCCTCTCCTGCGTTGCGCGACCTGGCCGG
CGACGCGGCCCTGGACGATATGGGCCGCTTGGCCTTGCGCCTCCTCCATG
AAGTCAGTCAGGCGGGTGCTGGCTCCTCTTTTCAACCACTCCTCTTCTCC
CACGCAACCTCCTCCTCTTCTTTTCCTACCCTTCCACTGGACAACTCTGG
CTGGTTGCCTTACGTGCGTGTACTTCCTTCCCGTAACCAGATGGATCTTC
CTTTCTTGTGGGAGGAGGACGGGAGGGAGGGAGGGGGAGAGGATGAGGGA
GAGGAAGATTCATGTGGACCTGAAGATTCGCGCGACTCATTACTTGCTCT
CTTGGCCCCTAGCCCCCTCTACGACGACATTGTGGCCCTGCGTGAAGAGA
TGCGAGGCGAGCTGGAAAGTCTTCGCAAAGCCGTGCTCGCCCACCGCACC
CTTCCCACCTCCCCAACCATCCTTTCCTGCTTGACCTGGGAAAATTGGTC
CTGGGCTCGGGCCGTCGCCATGTCTCGTCCCTACGTCTTGAAAAGCCGGC
CGAGCCGAAGTACCGAGGAGGCCGGACGCCCGGACTTTTTCGGCGACCCC
GTGCTTCAACTTCTCCCCTTGCTCGACATGGCCAACCACGATGACGCAAT
ACATTATGCCGTCCAGCCAGGGGATGGGGTCTTCACGTCCCGGGAGGAAG
TGCAGCTGGTGGCGGACCGCGACTACCCGGAGGTAGGGGCGCCTTTTCTC
TCATCCTACGGGCCCTTGTCTTCCGCGACCAAATTCTACTCCTTTGGGTT
CTTGGACACGCTCTCCCTCCCTCCCTCCGCCCGTTCCTCCCCCCCTTCTT
CCCTCTTTGCCTCCCGCGAGTCTCGAGAAGACGACATGCCTGGACTGGTG
CCAGCTCAGGGTACTGCCCTCCTTGTTCTGAGCCTGGACGGTGAAGGCTG
CACCGACGAAGGCAACCACAAAAGCGAAAAACGCCGAAGTTCCCCCGAGA
TGCCGGAGGCAGCGAAGGAGGAGATGACAAGGGAGGAACGAAGAGCACGG
AATGTCTTCGGGCGGAAACTCGACGTATTGAGTTCGATGGGACTCAAGGC
TGAGGGACAACGGGTGGAAATATCGACGCGTACCTTGCTAAAGAGAGGGC
TGGGGTCAGAGAGGATGGCTGCAACAGTCCGTATGGAGGGCGGGGAGGAA
GAGGGGGAGGGAGGGAGGGAAGATGATGGGGGGGGAATGGACCGGCTGCG
ACGCTACCTCCGTCTCAAACATATGGGAGAAGAGGACATTGACGGTTTTT
TAAATTCTCCCCCCCCCCGTGTTCCTCTCCCTCCTCCTTGGATGAAAAGC
AAGTCTGGAACCGTCTCGCCTCTCCTTTGTCTTCACCGACGGAGGTCAAG
GCGGCTGTTGAAGCCTTGCAAATCATCCGTAAGGGGTTGCAAAATGTGGA
AGACCGCTGGGAACGGGTCCGTCACCGGTTGAAGGAGGAAGGGAGGAAGG
G

protein sequence of rna552

>rna552-protein ID=rna552-protein|Name=rna552|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MHDRPLLVYAPSRALFVVLTGSFLLYQALGAAVLLTRTYPFGVKYHDSRP
SYGRSSFVNPPMLSSLRPLLHSVTGMGTLAAAGTSSPPASSCSTTPALPP
CARVIPVPILSDNFAYLVVDPQTGKAACVDPAEPAKVLAAAQREGIKLST
LLCTHKHWDHAGGNEEMARMLPGLEVVTTKFEDIPAATIRLGDDDVYTLG
SLSVRALYTPCHTKGHVLFLVTPQDEAGPGTSPTAPVLFSGDTLFVGGCG
RFFEGDGAQMVEALMGRVASLSPETLVYCGHEYTQSNLAFAMSVEPENAA
LRAKIAVATAALRSGQPTVPSTVGSELEINPFMRVGEAAVIKAAREKGGA
AGEDPVSVMTALREMKNIFKG

mRNA from alignment at CM002455.1:1376452..1378262+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna552 ID=rna552|Name=rna552|organism=Nannochloropsis gaditana|type=mRNA|length=1811bp|location=Sequence derived from alignment at CM002455.1:1376452..1378262+ (Nannochloropsis gaditana)
TAGGCATGCACGATCGGCCGTTGCTGGTATACGCACCATCTCGAGCTCTC
TTTGTCGTCCTCACAGGATCTTTTTTGCTGTACCAAGCCCTTGGCGCCGC
CGTCTTACTTACGAGGACATATCCCTTTGGCGTCAAATATCACGATTCAA
GACCATCGTACGGTCGATCAAGCTTCGTCAACCCACCCATGTTATCGTCG
CTCCGTCCATTGCTGCACAGTGGTACGTTCTTTGATGACCCTGCATGTGA
GACGACAGGCATGGGGAGGTTAATCCGGAAGGTCATATATTTTCTGATTT
TGACGCAACCACCCCACTTTCTCGTAGGACAAATTTTGTCCGGCTCTATT
AAACGTAGTCTATTGCGATCGTTAAAACGCTCCCCCTTTCACCGGCCCGG
CTTGACCGGCCTGATAGTGACAGGCATGGGGACGCTCGCGGCAGCcggaa
cctcctcccccccggcctcctcaTGCTCCACcactcccgccctgccccct
tgCGCCCGTGTCATCCCCGTTCCTATTCTCAGCGACAATTTTGCTTACTT
GGTTGTGGACCCTCAAACCGGAAAAGCTGCGTGTGTCGATCCTGCCGAGC
CAGCGAAGGTCCTGGCGGCCGCCCAACGCGAAGGCATTAAGCTGTCCACC
CTCCTTTGCACGCACAAACACTGGGATCACGCAGGCGGTAACGAAGAAAT
GGCGCGCATGCTGCCCGGTttggaggtggtgacgacCAAGTTTGAGGACA
TCCCTGCCGCCACCATCCGCTTGGGCGACGACGATGTCTACACGCTTGGA
TCCCTGAGCGTGCGTGCTCTCTACACACCCTGCCACACCAAAGGCCACGT
GCTGTTTCTCGTGACGCCacaggacgaggcagggcCGGGGACGAGCCCGA
CGGCCCCTGTCCTTTTCTCGGGCGACACATTGTTCGTGGGAGGCTGCGGC
CGGTTTTTCGAAGGCGACGGCGCGcagatggtggaggcgctTATGGGCCG
CGTTGCCAGCCTCTCCCCCGAGACCCTGGTCTATTGCGGGTACGTCTTGC
TAACACGGTgtttggaggaggaacaggggaTGTTGTGGCCCCGAGACGGG
GGTGTATTCGTTGGCTTGAGATAAGGCGGATGCCAGTATGTGGGTGGGGC
GGTCCTCTGTTAGCACACGAAACGACCCGATCGTCCCGGGCGCGTGCTGG
AGAGcagaggcagaggagaagaaagggtggcggagggtggaaggggctCA
TACCGAGTGAGAGAgccgagagagagagagaagccGTCGTGGGCGCATTG
GTTGATCTGTGGGACTGGATGGGGGGTGGGATGTgcatgggggggggcga
cgaaAGAGCGACCCTGGCAACGTCCAGCTTTCTCCCGTCGCATTGCGTCT
CACCCTTTCCTTGGGCCGCAAAGGATGAGGGActtggcctccctctctca
ctcccgccctccctcccgcccttccccccggcccctgtaCTCCAACACCC
CCGatatttccccctccctcacaggCACGAATATACCCAATCCAACCTGG
CCTTTGCCATGTCGGTGGAGCCTGAAAATGCTGcccttcgcgccaaaatc
gCTGTTGCCACGGCTGCCCTGCGCTCAGGACAGCCGACCGTCCCCTCCAC
GGTAGGGAGCGAGCTGGAGATTAACCCCTTCATGCgtgtgggggaggccg
cGGTGATAAAGgccgcgagggagaaagggggggcggcgggggaggatcCA
GTCAGTGTGATGACGGCATTGCGGGAAATGAAGAATATTTTCAAAGGTTG
ATGGGGGAGGG

Coding sequence (CDS) from alignment at CM002455.1:1376452..1378262+

>rna552 ID=rna552|Name=rna552|organism=Nannochloropsis gaditana|type=CDS|length=3348bp|location=Sequence derived from alignment at CM002455.1:1376452..1378262+ (Nannochloropsis gaditana)
ATGCACGATCGGCCGTTGCTGGTATACGCACCATCTCGAGCTCTCTTTGT
CGTCCTCACAGGATCTTTTTTGCTGTACCAAGCCCTTGGCGCCGCCGTCT
TACTTACGAGGACATATCCCTTTGGCGTCAAATATCACGATTCAAGACCA
TCGTACGGTCGATCAAGCTTCGTCAACCCACCCATGTTATCGTCGCTCCG
TCCATTGCTGCACAGTGTGACAGGCATGGGGACGCTCGCGGCAGCcggaa
cctcctcccccccggcctcctcaTGCTCCACcactcccgccctgccccct
tgCGCCCGTGTCATCCCCGTTCCTATTCTCAGCGACAATTTTGCTTACTT
GGTTGTGGACCCTCAAACCGGAAAAGCTGCGTGTGTCGATCCTGCCGAGC
CAGCGAAGGTCCTGGCGGCCGCCCAACGCGAAGGCATTAAGCTGTCCACC
CTCCTTTGCACGCACAAACACTGGGATCACGCAGGCGGTAACGAAGAAAT
GGCGCGCATGCTGCCCGGTttggaggtggtgacgacCAAGTTTGAGGACA
TCCCTGCCGCCACCATCCGCTTGGGCGACGACGATGTCTACACGCTTGGA
TCCCTGAGCGTGCGTGCTCTCTACACACCCTGCCACACCAAAGGCCACGT
GCTGTTTCTCGTGACGCCacaggacgaggcagggcCGGGGACGAGCCCGA
CGGCCCCTGTCCTTTTCTCGGGCGACACATTGTTCGTGGGAGGCTGCGGC
CGGTTTTTCGAAGGCGACGGCGCGcagatggtggaggcgctTATGGGCCG
CGTTGCCAGCCTCTCCCCCGAGACCCTGGTCTATTGCGGgCACGAATATA
CCCAATCCAACCTGGCCTTTGCCATGTCGGTGGAGCCTGAAAATGCTGcc
cttcgcgccaaaatcgCTGTTGCCACGGCTGCCCTGCGCTCAGGACAGCC
GACCGTCCCCTCCACGGTAGGGAGCGAGCTGGAGATTAACCCCTTCATGC
gtgtgggggaggccgcGGTGATAAAGgccgcgagggagaaagggggggcg
gcgggggaggatcCAGTCAGTGTGATGACGGCATTGCGGGAAATGAAGAA
TATTTTCAAAGGTTGAATGCACGATCGGCCGTTGCTGGTATACGCACCAT
CTCGAGCTCTCTTTGTCGTCCTCACAGGATCTTTTTTGCTGTACCAAGCC
CTTGGCGCCGCCGTCTTACTTACGAGGACATATCCCTTTGGCGTCAAATA
TCACGATTCAAGACCATCGTACGGTCGATCAAGCTTCGTCAACCCACCCA
TGTTATCGTCGCTCCGTCCATTGCTGCACAGTGTGACAGGCATGGGGACG
CTCGCGGCAGCcggaacctcctcccccccggcctcctcaTGCTCCACcac
tcccgccctgcccccttgCGCCCGTGTCATCCCCGTTCCTATTCTCAGCG
ACAATTTTGCTTACTTGGTTGTGGACCCTCAAACCGGAAAAGCTGCGTGT
GTCGATCCTGCCGAGCCAGCGAAGGTCCTGGCGGCCGCCCAACGCGAAGG
CATTAAGCTGTCCACCCTCCTTTGCACGCACAAACACTGGGATCACGCAG
GCGGTAACGAAGAAATGGCGCGCATGCTGCCCGGTttggaggtggtgacg
acCAAGTTTGAGGACATCCCTGCCGCCACCATCCGCTTGGGCGACGACGA
TGTCTACACGCTTGGATCCCTGAGCGTGCGTGCTCTCTACACACCCTGCC
ACACCAAAGGCCACGTGCTGTTTCTCGTGACGCCacaggacgaggcaggg
cCGGGGACGAGCCCGACGGCCCCTGTCCTTTTCTCGGGCGACACATTGTT
CGTGGGAGGCTGCGGCCGGTTTTTCGAAGGCGACGGCGCGcagatggtgg
aggcgctTATGGGCCGCGTTGCCAGCCTCTCCCCCGAGACCCTGGTCTAT
TGCGGgCACGAATATACCCAATCCAACCTGGCCTTTGCCATGTCGGTGGA
GCCTGAAAATGCTGcccttcgcgccaaaatcgCTGTTGCCACGGCTGCCC
TGCGCTCAGGACAGCCGACCGTCCCCTCCACGGTAGGGAGCGAGCTGGAG
ATTAACCCCTTCATGCgtgtgggggaggccgcGGTGATAAAGgccgcgag
ggagaaagggggggcggcgggggaggatcCAGTCAGTGTGATGACGGCAT
TGCGGGAAATGAAGAATATTTTCAAAGGTTGAATGCACGATCGGCCGTTG
CTGGTATACGCACCATCTCGAGCTCTCTTTGTCGTCCTCACAGGATCTTT
TTTGCTGTACCAAGCCCTTGGCGCCGCCGTCTTACTTACGAGGACATATC
CCTTTGGCGTCAAATATCACGATTCAAGACCATCGTACGGTCGATCAAGC
TTCGTCAACCCACCCATGTTATCGTCGCTCCGTCCATTGCTGCACAGTGT
GACAGGCATGGGGACGCTCGCGGCAGCcggaacctcctcccccccggcct
cctcaTGCTCCACcactcccgccctgcccccttgCGCCCGTGTCATCCCC
GTTCCTATTCTCAGCGACAATTTTGCTTACTTGGTTGTGGACCCTCAAAC
CGGAAAAGCTGCGTGTGTCGATCCTGCCGAGCCAGCGAAGGTCCTGGCGG
CCGCCCAACGCGAAGGCATTAAGCTGTCCACCCTCCTTTGCACGCACAAA
CACTGGGATCACGCAGGCGGTAACGAAGAAATGGCGCGCATGCTGCCCGG
TttggaggtggtgacgacCAAGTTTGAGGACATCCCTGCCGCCACCATCC
GCTTGGGCGACGACGATGTCTACACGCTTGGATCCCTGAGCGTGCGTGCT
CTCTACACACCCTGCCACACCAAAGGCCACGTGCTGTTTCTCGTGACGCC
acaggacgaggcagggcCGGGGACGAGCCCGACGGCCCCTGTCCTTTTCT
CGGGCGACACATTGTTCGTGGGAGGCTGCGGCCGGTTTTTCGAAGGCGAC
GGCGCGcagatggtggaggcgctTATGGGCCGCGTTGCCAGCCTCTCCCC
CGAGACCCTGGTCTATTGCGGgCACGAATATACCCAATCCAACCTGGCCT
TTGCCATGTCGGTGGAGCCTGAAAATGCTGcccttcgcgccaaaatcgCT
GTTGCCACGGCTGCCCTGCGCTCAGGACAGCCGACCGTCCCCTCCACGGT
AGGGAGCGAGCTGGAGATTAACCCCTTCATGCgtgtgggggaggccgcGG
TGATAAAGgccgcgagggagaaagggggggcggcgggggaggatcCAGTC
AGTGTGATGACGGCATTGCGGGAAATGAAGAATATTTTCAAAGGTTGA

Synonyms

Publications