rna5512, rna5512 (mRNA) Nannochloropsis gaditana

Overview
Namerna5512
Unique Namerna5512
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length559
Alignment locationCM002466.1:163752..165134 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100488g3.3624.mrna
Orig protein idgnl|cribi|Naga_100488g3.3624
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:163752..165134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100488g3gene5324Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25175.1cds5498Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5512rna5512-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5512 ID=rna5512|Name=rna5512|organism=Nannochloropsis gaditana|type=mRNA|length=559bp
CCCTCAGGGCTGCAAGACCGCCGTGGGGCGTGCCCTTCAAAAGACATCGC
CACCAGCGACTCCCTCTTCCTCCGCCAGCCCCCTCCTGTGGACGACAAGG
AGGGACGCGCGGCCCTCCGCCGCCTCCAGGAGAGCGGCCTGGGCCTCCTC
TCCCCTGCCTCCACCCTCACCGCCACCCCCGTGCCCAACGCCATCGCCGT
CTACGACCTGGCCGCCTCCCTCCCTCGGCCCTCCCTCCCTCCCTCCCCAG
GCGGCTCGCTACGCCGTCACGCTCTCGGGGAAGGAGACGGAGGAGGAACT
CAAGAAACTAAAGGAAGCTTCACCGGTGATGGTGCTCTTGGCGATCGATC
CGTCCTTGAGCCGCGTGCATGCGTCGAGGCGGTTGATGGAGTGGATCGTG
CGCGAGGGCCTGAGCTTTCCCGTCATCCACCACTTCATTTCGGAGGTAGG
GAGGGAGGGAAGGACGGAGGGAGGGAGGGACGGAGGGGGGAATACGAAGA
CGCGTTGGTGACGTAGAGCGTGCTGTCGTCTGCAACTGCTTGACCCACGC
CACCCTCCC
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protein sequence of rna5512

>rna5512-protein ID=rna5512-protein|Name=rna5512|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MMFLRAKERRHQNLESVRYQMGTEPSTGTCLCQLKGERYTRLAVFKPKGI
SGQAFRLQNPPQSDVECPQAPLGQRILPPSDIGFSTRPLEGEERRPMPVS
ERTEQMQNIGCQAQKGCEFFFCGLLLF
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mRNA from alignment at CM002466.1:163752..165134-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5512 ID=rna5512|Name=rna5512|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp|location=Sequence derived from alignment at CM002466.1:163752..165134- (Nannochloropsis gaditana)
GACGCCATTGTTCACAAGCAGGCAAGATACTTTCCCAGTCCCCCTTGGTA
TTTACGAGGCATTATGCCTCACGTGCGCTATATTGTTACAAAAGAAGTAG
TAATGTCATGCATGAACGTTGATGTTCATTTGTTTTGTCTTTAAAAATTC
TGCATATCCTCGTACATCGTAAAATAAAATGGCACTGCATGCTCTCGATC
ACATCAGACCTCAATGCGCTCGTGGCTACTTAACCTTTAATAAAAAAGCA
TAGGTGCTTGATTGAACGCCGCCACGATGTCCACATGTCAGACTATGGTA
CAAAGTACCGATATGTAAGAGTTTGAGGAGCAACCGGGGAATCTTGAAAA
GCGGCGTAATAAGCAGACCGGTGCACTGCATCAGTCGGATTTCCTCCCGC
ATCCCTCCACCACGTCCAGGACTGAAAGCTCGTCGCATTCGCTCTTCTAT
CTCGCATACATGTATATTAATATACAGACAAATGTCAACATGCGATTTAA
TAAGTGCGTTGGACTCCGCTTGCCCTCTTGTAGACGACTCAAATAAAATC
CTACCCTCCCTTTTCTTTCACCCCACGATTTACCTGTAGGGCTGTGTCAG
GACTGCTTCATCGATACTCGCGGCTCACATTATGACACCAAGACAGGTAC
CTCTGCTGACGCCCGACTCGTGCGGGTGACTAGAGGCGATTGAAAGAGGG
GCTTTAAGGTGCGTAGTAGTACTGCCTCTACACTGTCACCATAGTTCATG
CTTGAGGGGTGAGTAGCTTACTTCAAATTTAGGTAGTTTCTTTCATATGT
ATATTTTGCCAACAAAGCTTTGTAATGTATTTTAGAAGTTGAATACTTCA
AAATGTTGCGGAATGCTCGAAATAAGGCCTTTCAGGGCTGTGTCTGACGC
CACGAGCTCTCGCATGGCTTGGGAAAAGCCTTTTTGAGCCCAAAAATGAT
GTTTTTGCGTGCAAAGGAGCGTAGACATCAGAATCTTGAGAGTGTTAGAT
ACCAAATGGGGACAGAGCCCAGTACAGGGACTTGCCTGTGCCAGCTGAAA
GGAGAGCGCTATACTAGACTAGCTGTTTTCAAGCCAAAAGGGATCTCTGG
GCAAGCTTTCAGATTGCAAAACCCTCCACAAAGCGACGTGGAATGCCCGC
AAGCTCCCCTCGGGCAGAGAATCCTGCCGCCGTCGGATATCGGCTTTAGC
ACGCGACCGTTGGAAGGAGAGGAAAGGCGCCCAATGCCGGTGAGCGAGAG
AACAGAACAAATGCAAAATATAGGGTGTCAAGCGCAGAAGGGTTGCGAGT
TCTTTTTTTGTGGTCTTTTGTTGTTTTGAAAGACGCTCACAGCATTTGCC
AATTCGTAAACCTGGCAAGGGAGTGCGTGAAGG
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Coding sequence (CDS) from alignment at CM002466.1:163752..165134-

>rna5512 ID=rna5512|Name=rna5512|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002466.1:163752..165134- (Nannochloropsis gaditana)
ATGATGTTTTTGCGTGCAAAGGAGCGTAGACATCAGAATCTTGAGAGTGT
TAGATACCAAATGGGGACAGAGCCCAGTACAGGGACTTGCCTGTGCCAGC
TGAAAGGAGAGCGCTATACTAGACTAGCTGTTTTCAAGCCAAAAGGGATC
TCTGGGCAAGCTTTCAGATTGCAAAACCCTCCACAAAGCGACGTGGAATG
CCCGCAAGCTCCCCTCGGGCAGAGAATCCTGCCGCCGTCGGATATCGGCT
TTAGCACGCGACCGTTGGAAGGAGAGGAAAGGCGCCCAATGCCGGTGAGC
GAGAGAACAGAACAAATGCAAAATATAGGGTGTCAAGCGCAGAAGGGTTG
CGAGTTCTTTTTTTGTGGTCTTTTGTTGTTTTGA
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Synonyms
Publications