|
|
Properties
| Property Name | Value |
|---|
| Product | riboflavin kinase |
| Orig transcript id | gnl|cribi|Naga_100527g2.3200.mrna |
| Orig protein id | gnl|cribi|Naga_100527g2.3200 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:139471..142573 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5506 ID=rna5506|Name=rna5506|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp
CAATGAATCTTTATCAGAATGCTTTAAACATGCGAAATATGCCCCCCAAA
AAACATAGAGGAGGTTTTTTGTGCGATTTCAAATTGAAGTCGGCGTCTCC
TTTCTTTGGTTGCTGTTGCCACCGAACAAACTCACATTGACCTGATTTGT
TTCAATACGTACGTCAAACACGCAGAATAAAGATAAATGTACTGATAACG
AGGAGACTATGTCACATTTTAGGGATATGCGTCGTCTACCGCGTCTCTGT
GCAGACAAACAGGGCTCCTTGAAGACCGTCATTCCCCTTCTGTTTCTGTC
TAGTGCATCAAGTTTCGCGTCACGATCTGCCTCTTGCTGCTTCAGGACCT
ACGCGGCTGTATGTGCTGTCCTTCTGGCCTCATTTACCTGCCAATCAGCT
CTTGCATTTGCATGGGGCCCCCCAATGTCGTCGTCGCACTCTCTTTTGGG
AAGTCAAATTAGCAGCCTCGTACATGACTACCATTCGCGGAGGATGCTGG
TGTGGCAATCGTCGGAATCTTTGGATTTCCACAAGGAGAAAGTGTACGGC
ATGCATGACTCATTTGAAGGGCGTGCTGCTTCGTCGACGGTATGGGAAAA
GGACTCGGCGGAGGAGGAAAAGCGACGGGCATCCCACAATGAGAAGCAAG
CAAGTGTATTTGACGAAGCAGCGCAGTAAGTGATCGGAGAGAAGAATGAT
TTGAAAATGCTTGGGTAAACTTGCGGAAGACGTGTTGAAAAAAGTGCGTA
AGGGACAGAAAGGAGAGGAAAGGAGAGGAAAGTGGAGCAGCCATGTGGGA
AGGAAGAAGTACGAAGCATCTATGAATAGGACTGCACTGTAGTGTAAGAA
ACTGACAAGTGCGCCTATCCTGGTACTTTGACCGGCTTATTTCCCTCCTC
GCAGATTTTTTTTCCAGCGAGGAAGCGACCCCTGAGGACGTTATCCCTCG
TCTCCGACGCATCGCCGAGGCTGCTGCCCTCCGTCCCACCGATCGTGTCC
TCGACGTGGGCACAGGGACCGGGGCCCTCCTCCCCTTCCTCCTTCCCTAC
CTGGACGAAAACGCCGGAGAGAAGCGCATTGTCGGGATGGATCTCTCCGC
GGGCATGTTGGTGGTGGCGAGGGAGAGGTTTCCGCGTGCGTCCTTTTGGC
AGGGGGACGTTCTTGATCTCCCCGTGATATACGAGCGGGAGGGGGGGAAG
GAGGAAGGGCTGTTCACCGCCGTGTTTTTCAACGCCTGCTTTGGAAACGT
CTTTGACCAGGCACGAGCCCTCCGGGAAGTGGGCAAGCTGGTCAAAAAAG
GCGGCCGGGTGGTCATTTCTCATCCTTTAGGTGCCGATTTCGTGGAAGAA
TTGCGGCGGCGTTCCCCCTCCGTCGTGCTCGCGGACCTTCCCAGGGACGA
AAAGGCGTGGAGGGTAGGGAAGGAGGGGAGAGAGAGAGGGAGGGACGGAG
GGAGGGCGGGAAGGAGGGAAAGAAGGAACAGGGATGACATGTGGTCACGG
GGTCGTTCCTCGTCTTTCCTTTCCCTGCTCCCAACCATTCCCTCCTTTCC
CTTCTTGCCCTGCTCCTTCTTCCAGGACATTCTGGTCACAACACCCTTTC
AGCTTACCTCGCTGCAGTCAACATCTTCCCTCTACCTCGCCCTCCTTTGC
CGTCGGCCTGATCAACCCCTCCCTCAGGCGCTCCTCCTCCAAGGACCAGT
CAGTCAAGGATACAAACGCGGAAGCAAAAAACTGGGCTTCCCCACCGCCA
ACCTCCCATCCTCGCTTTTTGTCGTCAAATCGCTCATAGAAGATATTCCC
GTGGGTGTCTATTGCGGTTGGGCTCGTGTAGTTGGGCGTGAGTGTAAGGC
AGTGGTGAATATTGGGTACTCCCCTACATTCCAGGGGGAGGAGAACAGGG
AGAAGATTGTAGAGGCGCATTTGATTGACGGCGCTTTTCCCGGAGATTTC
TACGGGGAGTTAATGACATTGATTCTCACAGGGTTCCTACGGCCCGAGCA
GAAATTTCCGAGCTTCCCTGCCTTAGTAGCAGCTATCCAGCAGGACGTGG
AAGACGCCAGGGTGGCGATGGACTTGCCTGTGTATGCAGGGGCGAAGCGA
TTGGTAGAGGAAGAAGGGGAGGGCACAGGGGAAGAGGAGAGAGGAAATGG
AGCGTCGAAGGGGAAAGGGAGGTGGGTGCCGTTTGAGGAGTGGGGTCCCA
GATAATGCTGTAAGTCGAAAAGTTTGTCATCTTTGTGCGTCGTCGTCATC
ATTGTCACCGACTCAAGCTTTAATTTGCGTAGAGACTAAGATGGACACAG
TTGTTTCTTTATCCACCTACTGTGCTGAAACGCTCGAGAAGGGTTGTTCA
AGAAAAAGCGGAAAGTTGGTGAAATAATGCAGGGTAGGTATGAAGGTTAA
GAGTCGGCTGTCTCCACGTTAATCGACACAGCACAATGTACACGCGGGAA
ATGATTGAGAAGAGCATCCTGCTCAAAGCCTACCAAACCAGAATGGACGG
GGAAGTAAAAGCATAGGCAATGGTAGTTCTGGCAAAGCAACTCGGGGACT
CCACAAGCATACCCGGAGGAGATGATTACGACGACTATTTCAATTTGACC
TATCCCACTAGAATTGCGACCTTGCCCAAAGTTTCCAAGGCCCCTTGATC
TTACTTTTGGCTATTGACATGAAGCTTTGCATGGTTTGCAATGGGAGAAT
CCCAAGTGCCGCTGAGAGTTGTTTCTGCTGTTTGCATGCAAGTATCTTTC
TGTACTTCCGATGTGACGTACGTGTGTATCTCTTCCTCCAATGGCAATAC
ATGAGAAAAACACGCCGTGCCGCAGTCAAGTATGTACCTCGCATAAGACG
CATGTACTCAAGGACGTAGCCGTATGCGAGTTGTTCGAGACGGCAATGTT
GACCACAGCTTTTTCTTTTGG back to topprotein sequence of rna5506 >rna5506-protein ID=rna5506-protein|Name=rna5506|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MDLSAGMLVVARERFPRASFWQGDVLDLPVIYEREGGKEEGLFTAVFFNA
CFGNVFDQARALREVGKLVKKGGRVVISHPLGADFVEELRRRSPSVVLAD
LPRDEKAWRVGKEGRERGRDGGRAGRRERRNRDDMWSRGRSSSFLSLLPT
IPSFPFLPCSFFQDILVTTPFQLTSLQSTSSLYLALLCRRPDQPLPQALL
LQGPVSQGYKRGSKKLGFPTANLPSSLFVVKSLIEDIPVGVYCGWARVVG
RECKAVVNIGYSPTFQGEENREKIVEAHLIDGAFPGDFYGELMTLILTGF
LRPEQKFPSFPALVAAIQQDVEDARVAMDLPVYAGAKRLVEEEGEGTGEE
ERGNGASKGKGRWVPFEEWGPR back to topmRNA from alignment at CM002466.1:139471..142573- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5506 ID=rna5506|Name=rna5506|organism=Nannochloropsis gaditana|type=mRNA|length=3103bp|location=Sequence derived from alignment at CM002466.1:139471..142573- (Nannochloropsis gaditana)
CAATGAATCTTTATCAGAATGCTTTAAACATGCGAAATATGCCCCCCAAA
AAACATAGAGGAGGTTTTTTGTGCGATTTCAAATTGAAGTCGGCGTCTCC
TTTCTTTGGTTGCTGTTGCCACCGAACAAACTCACATTGACCTGATTTGT
TTCAATACGTACGTCAAACACGCAGAATAAAGATAAATGTACTGATAACG
AGGAGACTATGTCACATTTTAGGGATATGCGTCGTCTACCGCGTCTCTGT
GCAGACAAACAGGGCTCCTTGAAGACCGTCATTCCCCTTCTGTTTCTGTC
TAGTGCATCAAGTTTCGCGTCACGATCTGCCTCTTGCTGCTTCAGGACCT
ACGCGGCTGTATGTGCTGTCCTTCTGGCCTCATTTACCTGCCAATCAGCT
CTTGCATTTGCATGGGGCCCCCCAATGTCGTCGTCGCACTCTCTTTTGGG
AAGTCAAATTAGCAGGTGAGACTCCTAACCTCCTAGCTCAGCTTTCAGCG
CTTGCCTCACATAAATCGGTGCAAAGTCAGGGTATAACACTTTAGGTCAT
CTTGACCATATATTCAAACGATCCATGCTGACCATAAAAAAGCAGCTGAC
TTTATTGTCAAAAATTACATTGCACCACCGTTTCATACCACTAGCAGCCT
CGTACATGACTACCATTCGCGGAGGATGCTGGTGTGGCAATCGTCGGAAT
CTTTGGATTTCCACAAGGAGAAAGTGTACGGCATGCATGACTCATTTGAA
GGGCGTGCTGCTTCGTCGACGGTATGGGAAAAGGACTCGGCGGAGGAGGA
AAAGCGACGGGCATCCCACAATGAGAAGCAAGCAAGTGTATTTGACGAAG
CAGCGCAGTAAGTGATCGGAGAGAAGAATGATTTGAAAATGCTTGGGTAA
ACTTGCGGAAGACGTGTTGAAAAAAGTGCGTAAGGGACAGAAAGGAGAGG
AAAGGAGAGGAAAGTGGAGCAGCCATGTGGGAAGGAAGAAGTACGAAGCA
TCTATGAATAGGACTGCACTGTAGTGTAAGAAACTGACAAGTGCGCCTAT
CCTGGTACTTTGACCGGCTTATTTCCCTCCTCGCAGATTTTTTTTCCAGC
GAGGAAGCGACCCCTGAGGACGTTATCCCTCGTCTCCGACGCATCGCCGA
GGCTGCTGCCCTCCGTCCCACCGATCGTGTCCTCGACGTGGGCACAGGGA
CCGGGGCCCTCCTCCCCTTCCTCCTTCCCTACCTGGACGAAAACGCCGGA
GAGAAGCGCATTGTCGGGATGGATCTCTCCGCGGGCATGTTGGTGGTGGC
GAGGGAGAGGTTTCCGCGTGCGTCCTTTTGGCAGGGGGACGTTCTTGATC
TCCCCGTGATATACGAGCGGGAGGGGGGGAAGGAGGAAGGGCTGTTCACC
GCCGTGTTTTTCAACGCCTGCTTTGGAAACGTCTTTGACCAGGCACGAGC
CCTCCGGGAAGTGGGCAAGCTGGTCAAAAAAGGCGGCCGGGTGGTCATTT
CTCATCCTTTAGGTGCCGATTTCGTGGAAGAATTGCGGCGGCGTTCCCCC
TCCGTCGTGCTCGCGGACCTTCCCAGGGACGAAAAGGCGTGGAGGGTAGG
GAAGGAGGGGAGAGAGAGAGGGAGGGACGGAGGGAGGGCGGGAAGGAGGG
AAAGAAGGAACAGGGATGACATGTGGTCACGGGGTCGTTCCTCGTCTTTC
CTTTCCCTGCTCCCAACCATTCCCTCCTTTCCCTTCTTGCCCTGCTCCTT
CTTCCAGGACATTCTGGTCACAACACCCTTTCAGCTTACCTCGCTGCAGT
CAACATCTTCCCTCTACCTCGCCCTCCTTTGCCGTCGGCCTGATCAACCC
CTCCCTCAGGCGCTCCTCCTCCAAGGACCAGTCAGTCAAGGATACAAACG
CGGAAGCAAAAAACTGGGCTTCCCCACCGCCAACCTCCCATCCTCGCTTT
TTGTCGTCAAATCGCTCATAGAAGATATTCCCGTGGGTGTCTATTGCGGT
TGGGCTCGTGTAGTTGGGCGTGAGTGTAAGGCAGTGGTGAATATTGGGTA
CTCCCCTACATTCCAGGGGGAGGAGAACAGGGAGAAGATTGTAGAGGCGC
ATTTGATTGACGGCGCTTTTCCCGGAGATTTCTACGGGGAGTTAATGACA
TTGATTCTCACAGGGTTCCTACGGCCCGAGCAGAAATTTCCGAGCTTCCC
TGCCTTAGTAGCAGCTATCCAGCAGGACGTGGAAGACGCCAGGGTGGCGA
TGGACTTGCCTGTGTATGCAGGGGCGAAGCGATTGGTAGAGGAAGAAGGG
GAGGGCACAGGGGAAGAGGAGAGAGGAAATGGAGCGTCGAAGGGGAAAGG
GAGGTGGGTGCCGTTTGAGGAGTGGGGTCCCAGATAATGCTGTAAGTCGA
AAAGTTTGTCATCTTTGTGCGTCGTCGTCATCATTGTCACCGACTCAAGC
TTTAATTTGCGTAGAGACTAAGATGGACACAGTTGTTTCTTTATCCACCT
ACTGTGCTGAAACGCTCGAGAAGGGTTGTTCAAGAAAAAGCGGAAAGTTG
GTGAAATAATGCAGGGTAGGTATGAAGGTTAAGAGTCGGCTGTCTCCACG
TTAATCGACACAGCACAATGTACACGCGGGAAATGATTGAGAAGAGCATC
CTGCTCAAAGCCTACCAAACCAGAATGGACGGGGAAGTAAAAGCATAGGC
AATGGTAGTTCTGGCAAAGCAACTCGGGGACTCCACAAGCATACCCGGAG
GAGATGATTACGACGACTATTTCAATTTGACCTATCCCACTAGAATTGCG
ACCTTGCCCAAAGTTTCCAAGGCCCCTTGATCTTACTTTTGGCTATTGAC
ATGAAGCTTTGCATGGTTTGCAATGGGAGAATCCCAAGTGCCGCTGAGAG
TTGTTTCTGCTGTTTGCATGCAAGTATCTTTCTGTACTTCCGATGTGACG
TACGTGTGTATCTCTTCCTCCAATGGCAATACATGAGAAAAACACGCCGT
GCCGCAGTCAAGTATGTACCTCGCATAAGACGCATGTACTCAAGGACGTA
GCCGTATGCGAGTTGTTCGAGACGGCAATGTTGACCACAGCTTTTTCTTT
TGG back to topCoding sequence (CDS) from alignment at CM002466.1:139471..142573- >rna5506 ID=rna5506|Name=rna5506|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002466.1:139471..142573- (Nannochloropsis gaditana)
ATGGATCTCTCCGCGGGCATGTTGGTGGTGGCGAGGGAGAGGTTTCCGCG
TGCGTCCTTTTGGCAGGGGGACGTTCTTGATCTCCCCGTGATATACGAGC
GGGAGGGGGGGAAGGAGGAAGGGCTGTTCACCGCCGTGTTTTTCAACGCC
TGCTTTGGAAACGTCTTTGACCAGGCACGAGCCCTCCGGGAAGTGGGCAA
GCTGGTCAAAAAAGGCGGCCGGGTGGTCATTTCTCATCCTTTAGGTGCCG
ATTTCGTGGAAGAATTGCGGCGGCGTTCCCCCTCCGTCGTGCTCGCGGAC
CTTCCCAGGGACGAAAAGGCGTGGAGGGTAGGGAAGGAGGGGAGAGAGAG
AGGGAGGGACGGAGGGAGGGCGGGAAGGAGGGAAAGAAGGAACAGGGATG
ACATGTGGTCACGGGGTCGTTCCTCGTCTTTCCTTTCCCTGCTCCCAACC
ATTCCCTCCTTTCCCTTCTTGCCCTGCTCCTTCTTCCAGGACATTCTGGT
CACAACACCCTTTCAGCTTACCTCGCTGCAGTCAACATCTTCCCTCTACC
TCGCCCTCCTTTGCCGTCGGCCTGATCAACCCCTCCCTCAGGCGCTCCTC
CTCCAAGGACCAGTCAGTCAAGGATACAAACGCGGAAGCAAAAAACTGGG
CTTCCCCACCGCCAACCTCCCATCCTCGCTTTTTGTCGTCAAATCGCTCA
TAGAAGATATTCCCGTGGGTGTCTATTGCGGTTGGGCTCGTGTAGTTGGG
CGTGAGTGTAAGGCAGTGGTGAATATTGGGTACTCCCCTACATTCCAGGG
GGAGGAGAACAGGGAGAAGATTGTAGAGGCGCATTTGATTGACGGCGCTT
TTCCCGGAGATTTCTACGGGGAGTTAATGACATTGATTCTCACAGGGTTC
CTACGGCCCGAGCAGAAATTTCCGAGCTTCCCTGCCTTAGTAGCAGCTAT
CCAGCAGGACGTGGAAGACGCCAGGGTGGCGATGGACTTGCCTGTGTATG
CAGGGGCGAAGCGATTGGTAGAGGAAGAAGGGGAGGGCACAGGGGAAGAG
GAGAGAGGAAATGGAGCGTCGAAGGGGAAAGGGAGGTGGGTGCCGTTTGA
GGAGTGGGGTCCCAGATAA back to top
|