rna5500, rna5500 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5500
Unique Name	rna5500
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2851
Alignment location	CM002466.1:112188..114690 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100146g6.3718.mrna
Orig protein id	gnl\|cribi\|Naga_100146g6.3718
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:112188..114690 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100146g6	gene5312	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5500	rna5500-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25190.1	cds5486	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:112188..114690+
coding sequence from alignment at CM002466.1:112188..114690+

mRNA sequence

>rna5500 ID=rna5500|Name=rna5500|organism=Nannochloropsis gaditana|type=mRNA|length=2851bp
AAAGAAAGGACGAGTGAGATTTGCCCGTGGGTAGCCTATCTGCCACGCCC
CTATTCTCTGTCAAGTAAGGAAAGCATCTGTCTTGAGGCATTCGGTGGTT
GGGGAGTTACTCCCGCGCCCCTGGATCTCTAGGTGTCAAGTCCCCCTTCC
GGATAATCACCGTGCAAAACCATAAAGACCACATGGCACGCGTAATCATG
CTCAGGGACCTTGTAGACGGACGTATGACACTCGCGGTGTGCATCGGAGG
ACCTGATTTTATCGTGGTGTGTGACATGTGGTGACTTATCCAGGACCGCG
GTACTCGGCCAACCGCTCGAGGCATGTTTCAGCGTGTTAACGGAGAGATG
TACTTAACATTGGGGACAGTGCCGGTGCGGGATGGACGACTCCATGCTCA
ACATTCAAGTGCTTGATTTCTCTGCTTTGGTTCCATTGGACGTGGGGCAG
TCCGGCTTTGCATGGATATTCGGTTTCGTAAGCCGAGTCATGCCCGAGAA
AGGGGGTTCTGCAAGTCTTTACGAAATGTTCTGTCGCGCTGATTCCCACC
CACCAAAAACTCCACCCACACAGGTGAAATCGTTGCGCCACACGTACACA
CTAACTCAAATGTCGGAGCGGAGCGAAGAAAGGGAGGGCAACCCAGACAA
AGACGTGGGAGAGGATAGTTCTCAGAGAAAAGGACAGAGAGCGATGAAGG
TAAAGGAGGAAAGGAAGGTGAGAGAAAAAAAGACAAAGCGAAAAGATTCA
CAGGTTGGAAAGAGCAAGGTTAAGGAGTTGAAAGAGAAGTCGGATGGGAA
TGAAGAAGCGCCGAAGGACCAAACAGGGCACGAGACGAGGGAGTGCTCTG
AGGCCGCCAAAACGGAAAGTCTTGCATCCGCGGCGGATCAAGAGCTGGAT
CGTGAAAAAGCTGAGCCCGATGAGGCGATGCCACGTCCGAATATACCGAA
AGGCGGCACGTCCGAAGGCACCCAGCGCCTTGCCAGGGGCCGGGCTTGTC
TGGAATGCAAAACCAGTAAGGTCAAATGCGATAAGGCGCAACCGCGATGC
CAGCGATGCGTTCGCCACGGCTTTCTATGCCTCCCTCAAACTCGAGGACA
GGGACGGCCGGCAAAATGGAGGTAAAGAGGGGTCGGGAGAGGAGGGAGAG
GAGGCGAAAGCCTTACTAGATTACACATCGGTGGCCGCTTGTCTTCCTGT
GTCAAAGTCTATCTCCTCGTCTTGGGCTGCTATGGATGTCTCATTCTCTT
ATTTTTCACCGTGCAGGCTGTACTTGGCCGCCGACGACGCGGTCCAGGAC
GGCAAAGACGTGCTGGCCACGCAGTCGAAAGCATTGCTCCTCTCGTCTTC
CCAACTACCGCCTCCGCCGACGTCAAACTCTGCCTCTTACGAGCCTGCCC
TCCCGCCCTCCCTCCTTCCCTCCTTCCCTTCCTCTTTCCCGCCCAATCCG
GCGTCGGTGGGCCCTCTCCTTCAGCTTTCTTCCGCAGCCACCACCCCTCC
TCTCTCCTCCATCTCCTCGGCTCCCTCCGTCTCCCCTCCCTACTACCCCA
ACCCTTTGGGGAAACGCGAAGAGCACCCCGTCAATGAGGTGGAAAGTCAA
ATGCTGGCGGCCCGTTCCCTCAAACACTTGAAAGACGGGCATGCCTCCTT
CCCTTCTTCCTCGACTCCCGCCTACGCGTCCTCCTCCTTTCCATCGCGCG
GTCCCCCCGCCTCGGAGGGTCGTCTCTATGGCCCCATGCACGGCAGCATG
AACCCGAACCTCAGCAGCGGTTATGGGGGCAATTTCCAGTCACACCTGCT
GCCGCCAGGATATCAAAGTTACCCAAGCTACGGGAACATTAGGGAGATGC
ATAGCTTAGCCCCGGCCTTCCCACCCTACCACCCCGGTCCGGGCGCTTTC
CATATGCAGCATGTTTATCCGAATAATGCCGGCCTGACCGACGTCCCGTC
ACCCTTGCCGGCGCCCTCCTCCTACCCTCCTTTTCCTTCCCCTTCTTCCG
TGGCAGCTTTGGACGGGCCTGGTAGCATGGTTCGAGATACTTCCATGCCC
GGACTAGGGCTCCGAGATGGGCGGCAAGGGAATTGGGTCGATCCTCACCA
CCCGCCCCACCAGCACGCATCGATGCAATTCGTATCGCAACAGCAGCAGC
GAGAGCAGCAGCTCCGACACGGACAGGGGCAGCCGTACCACCCACAGCAA
GCAACACATTTCCATCAAGACGCGCGGCAGCCATGGTGGCAGCAGCATCT
GCGGCCTCCCCACCCGGTACCGCAGGGAACATTGCAGTGCCAACAGCAAC
AACTCATATTTGAACGGCAACATGAGCTGCAGCAGCAGCGACAACGACAA
CAGCAGCAGCCACAGCTTGGACTGATGTGACCTCCTATATATCTTTTGTG
CTTGGTGTGATCAAAAGACTCAGAACAGAAGTGACAGAGACGAATCCAAA
CGCATCACCCTAAGTACCGTTATCACGCCAATAGCGTACGTGAAGGCCGA
GAGAGGTGCATAACCGCATAACTCTGCTTTCGTGCAGGGAAGTCAGCGAA
GATTAGTATCCATTGTGATGTGCTCAACAAGGGCCACGGCACGAGTTGTT
CTTGAGACGCGAATGCATGAGTCCTGACGCGAAAAATGTCAATAATACAC
TACGAAGCGCCCCAAAGTTATCGATATGATTAGAGCAATATGTTACATCC
CTTTAAAAAATGTGGTCAGCCTGAATCATGCACTACGACTTCTTTTCCTT
TCTTATTCCGATTTTATAAAACTCCGCAACATATCTAGATGTCTTTCCAG
ATCACTTTTCAAACGCGACCTGTGCGACGATTTTGTGTGCAATTTTTCCT
C

protein sequence of rna5500

>rna5500-protein ID=rna5500-protein|Name=rna5500|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MTAYNGASDTLSGHWMQNGLCFRVGIQNAPSCLVRKQKHGNWRRLYHCLE
DLKPFELPTFLFLLHTLPLSRQCTICTCPSLLESKLFFNWHRGIINVRPS
LPLLL

mRNA from alignment at CM002466.1:112188..114690+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5500 ID=rna5500|Name=rna5500|organism=Nannochloropsis gaditana|type=mRNA|length=2503bp|location=Sequence derived from alignment at CM002466.1:112188..114690+ (Nannochloropsis gaditana)
TCTGTAGAAGCAGTACACAGTAGCCGTAGATGTGCTCGTTTATTCCGGAA
TAATCGGTCAGGGTTTTAGGGCTTACGAGAGAGGTCGTCTGTATAGCTCG
CGTAGTATCTTGGATTTCATGCTTGTAACTTTGCCTCGTTGGTTCGCGAA
AAAGAGGAACTTTTGTGCTAGAACGTGGACGTTAAGCAGACAAGATGAAA
ACAAGAGGGCAGGGTCTTGGCGAGAATCAGTTCTGAATAGGCATTTTGTG
AGATATCCTTTTCAGAGTGTGCGGCTTGTGCACTCAGGCCATTTAGAACA
TATGCTCATCCTGGGTATGCTGCGAACAATTCAGTCGTCGTGTTTTCTCC
AATTTTCTACAATTTTGACAAGCTCTTCTTGGTGTGCTTGAATGTCGTAA
TCGTGGTGTTTTTATGTGAGTGTTTGCTCATTTATGACTTCATCTTTTCA
GCGATTGATATTCATTTTCGTACCCTATAACAAGGCATGTCCTTCCACAA
CGAAAAAATTATTCCTATTCCCTCAGTTCTTCAATTTCTTTTAAATTTCG
CGTGACTGTCGTACAACTCAAAGCTTGATTTAACGAGTTCCGATTAATCA
CACCTCAACGTTTCAACGTTGATCATCTTGCGAGCGGAGAGTCACGATCA
CTCCCCAGGCGCATGGAACCATCTTGATACCAACCTTGATCGGCTGCCGT
CCATCTTCatgctttttctctttcgaAAGTCTGCTTGGTGCACCGCCGTC
AGGAAGCCAGATTGAGCACTGTACCGTGTGCGCGACCTTCGAGAGAACGC
TTTTGCCCATCGCTTCAAGGACGACGCCATTATTCGTCAAGTCCAGCCAC
TCACTCAGATGACGGCCTATAATGGGGCTTCTGACACCTTGAGTGGACAC
TGGATGCAAAATGGTCTCTGCTTCCGCGTTGGCATACAGAATgcgccctc
ctgcctcgtaCGAAAGCAAAAACATGGCAACTGGCGCCGCCTCTACCATT
GCCTTGAAGACTTGAAGCCTTTCGAACTCCCtacattcctcttcctcctt
catacGCTGCCGCTCTCGCGCCAATGCACTATATGTACGTGCCCGAGCCT
TCTTGAAAGCAAGTTGTTCTTCAACTGGCATCGTGGAATAATCAATGTTA
ggccttcgcttcctcttcttctctgaCGCATCTGAAAGTCCACGTGCATC
TTCACCTTTCACTGTCAAGTGGGCCCTAGACGCGCCGCTCCTTCTTGTGC
TAGCCGATGCTGTGTCCGCACTGCCACGTTTATCAATCAGCAGGGTGTAA
GGCTTCAAGGCCGCTGAAAACTGGGTCATTCGGCCTGGTGCGAAGCTATC
CGGACCGGTAGGACTGATTCGTCCGGCCCCCGTGGGCAAGATTACTTCTA
AATGAGAGCCAGAAGCCCGCGTTGCCATAGCTTCAGTCTTTGTGCAGTCA
CTCAGGTAGCTCTGATCGCCTGGAAAAACTGACCCGAATTTAGGCATGGG
GACGTCGACCTCGTTCATCATGGACGAGGTAGAGGAcaaaggagacgaag
acgaTGATGCTTGCGAGGAGGTGCTGCACGACGagaaagatgaagaggaa
gaagaagacaggtATCTGATGTTTGTCCGTGAACGGGGAGAGTTGTCACC
CTGATCGTACCCAGAAGTTTGAGTGTCGATGTCCCAAGCTTGGCATGACT
TCAAACCATCAGCAGTGAGGCAGAGACCAGTAGAGGCAGCGTTCAAGCTC
TTTGGAACGTATGTGGGAGCATCCTTCCCTGTATCGATGGATGCTCTTCC
TGAGCTTCTCTGCCGAGGctcctcttcgctttctcttccgttttcatcct
ccccagGAGTATCAGACGTGTTGCATGCATTGTTACCGGATGACGGTAAT
GCCAATGACAACAAAGTCTCAGAAACCGACGTTTCCGAGGATGTGCTCTG
ACCTTGCGATGAACGACATGTCTTTATCTTACCAGCGGCCTTTACAAGCG
ACAAGAAGCCACTCAATTTTTGTCGGCTAATGTTACTGGGAGCCGGATCT
GAGATGGAAGACACTGTACGTGTCGTCCCCAAGAAAGACATGAATCTGTG
TATGGCGAGAGCATGTTATAAGGCAGAGTGTGGGATTTTAAAGGATTTCT
CGCATTCGTATGATGTGTTCGATAACTCACGTTAGAACGGTAAAATGACG
AAGCGCTCACGACGGCACGGTCAAATTCGCCAATTACCAAGACAAGTTGT
GCATGTAAATTCGGCACTAATTGAGCACGAGTTAAGTGCTTTTAGATGCT
AGCCATTACGTCCAGCCTGGCAAAGACTGGAAAACAGAGTGtttggccgc
cgccaagcaTGTGCTGTCAGAGGAGAACTTTCTGAAGCGGACCGGGGTCT
ATGTATTCGACTGAATATTCAGCGCTCGAGATGCGATCGGCCCCGAGCGA
ATTCACCCGAAAACGACGGAGACTAAAAATGAATCTTACTATATTTTTCT
CCC

Coding sequence (CDS) from alignment at CM002466.1:112188..114690+

>rna5500 ID=rna5500|Name=rna5500|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002466.1:112188..114690+ (Nannochloropsis gaditana)
ATGACGGCCTATAATGGGGCTTCTGACACCTTGAGTGGACACTGGATGCA
AAATGGTCTCTGCTTCCGCGTTGGCATACAGAATgcgccctcctgcctcg
taCGAAAGCAAAAACATGGCAACTGGCGCCGCCTCTACCATTGCCTTGAA
GACTTGAAGCCTTTCGAACTCCCtacattcctcttcctccttcatacGCT
GCCGCTCTCGCGCCAATGCACTATATGTACGTGCCCGAGCCTTCTTGAAA
GCAAGTTGTTCTTCAACTGGCATCGTGGAATAATCAATGTTAggccttcg
cttcctcttcttctctga

Synonyms

Publications