rna5498, rna5498 (mRNA) Nannochloropsis gaditana

Overview
Namerna5498
Unique Namerna5498
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1867
Alignment locationCM002466.1:107257..107701 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100146g4.3717.mrna
Orig protein idgnl|cribi|Naga_100146g4.3717
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:107257..107701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100146g4gene5310Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5498rna5498-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25189.1cds5484Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5498 ID=rna5498|Name=rna5498|organism=Nannochloropsis gaditana|type=mRNA|length=1867bp
AAACCGAAGCGTTGGCGACATGTTGTGCTATTTTGCGGAGATTTTTCATG
TAAATGTTCCCCCTTTCTGCTAGGTCGACCCGTTCGATTGGCCGAAGAGC
GCCCGTCAATTACCGGATAATATGGGCGTCCGTAATTACTCTTCCGAGGC
AATACCACAAACTTACGGACATATAAACAATTCTTAAGACAGGTTACAAG
TATCAAACATGAAAATTTTGGAGTCTTCTCCTGGGCATCCATGTAAAGAC
GATGTGCCACGCTCCCAGAGTAAGCGGGAAGGAGGAGAAAACCCACAAAA
GGAGAAGGAAAACTCGAACGACCACAAGGTGGACAGGGAAAAACTGATTG
CTTCTTTAGATCGCAGTGTAGGTGGGCTACATGAGGTGAAGGGCGGAAAA
GAGGGGAGGGATGACCTGCAGGGAGACACCCGGCCCATGACGTCCGAAGC
CGTCTTCCCAGAGGGAAAGCATGCTGACGAGTGGGACGACGAAAGCCAGC
ATGCAGCACTACAAGGCGTTGCGACAGAGAACAAGGATGACAAGAAGAAG
CCTAAATACCAGGGTCCCCGAGGACGGGCCTGTTTGGAGTGCAAGATGAG
TAAGGTCAAATGCGACAGGAAGCAACCCCATTGTACCAGGTGCGTCAGTC
ATGGCTTCTTGTGTATACCGCAAAACCGAGGGCCCGGTCGCCCTGCCAAA
TGGAGGCTATATCTCGCCGACGAAGATGCCTTGGACAGCAGCAGTCTTTG
GGCGGGGCAGGCACGCACCATGATTCGCCAAGGCTGCAAGCTGGAGCCGC
CCGCCCTCCCTCCCTCCCTCCCTTCCTCCTTTCATGCCTCCACCTACCGT
CCCGACATGTCCCTGCCCCCGCCCATGTTGCCGCAGTTACGTGGGCCCTC
CTCTTCGTCCTCCTCGTCGTCTTCGTCGTCCTCCCCATGCCTCCCCTCCT
CTTACCCCTCCACCCCCCTGCCGCTCCATCCCTCCGTCAAAAAGCGGGAG
CGGTCCCTCGATGAGAGGGAAGAACATTTGCTTGCGGCCCGTTGCCTCAA
GTCCTTGAAAAAAGTGCAACATTTTCCTCCCCATCCTCCTGCCCTCCCCC
CCTCCGGCCTTGGTGACCTCTCGTACACGACCTGCCCGCCCAGATATAAC
GCTGACGGCTTCGTGTACAACCGGAAGAAGTATCCGGGTGCCGATCTACC
TGGAATGGGCGTTTACTACAACGGTGACATTCAACCGCACCATAACCCAT
CGACACGAAGTGGGCCCTCTTTCTCTCCCTGCTGGTACCCATCCTTCCAA
CACGCCGTGGCTCCCTCCCTCCCAGCGTACCATCCTGCGGCTCTGCCTGA
CCACCCTTCGTATCACATGCCCTGGGGGGGCATGGCTCCCTCTTATGGGC
CGCGCCCGGCCTTGTCCGCTCCTTTCCTGCCGACCCCTTCGTGGGATGGA
CGGCGGGGGCGATAATTCCTGCTCCTGTTGCCACTCCTACGTACTGCTGT
TCGTCCGAATGCAAACGTCGTGAAGTGTGTAATATGCAAAAATGATAAGA
TACGACGGTGTTCACAAGCATATGTTGCTTGTGCCCAGTCTGTGCGCCGC
GCGACGTCTTCAGATAGAGAAAATGACCCTTGGGGAAGATTCATAACATC
GGTAGCATTTTTGAAAGCTACTCGTGTGTTATTGGAGAGTGGCACGTTTG
ACGTTGATAGCCATAAGGGCACTTTCTCCACAGAATTAGAAAAGCGTCAT
GAATTTCGAAAGTATTAGCTTTGACGCAGACATATAAGTAAAGATATACT
GTCTTCTAGGAAGGTGGCATGTTTCGCTAGACGAAGTTAAATGGGAATCT
TACAGTGCACCTCCTGG
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protein sequence of rna5498

>rna5498-protein ID=rna5498-protein|Name=rna5498|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MNLCAYACDGMLGENGKIKERRIVNYSLADSTGKAPTSNARLPEIIAKIH
NSFLKESSPGIPPLQNILNDWRRESHRDRDTKSPELDGCTYTLEETGEIT
TVNRCTNVHCIDLGSMECILE
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mRNA from alignment at CM002466.1:107257..107701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5498 ID=rna5498|Name=rna5498|organism=Nannochloropsis gaditana|type=mRNA|length=445bp|location=Sequence derived from alignment at CM002466.1:107257..107701- (Nannochloropsis gaditana)
ATGAATTTATGTGCATATGCGTGCGATGGCATGTTAGGGGAAAATGGCAA
GATCAAGGAAAGGAGGATCGTAAATTACTCTCTCGCTGATAGCACGGGTA
AAGCGCCGACTTCAAACGCCCGCCTACCCGAAATCATAGCGAAGGTTGTG
CATTTAATACATGTGGAGCGTTTACGTGGGCTTCAACTTGTATTCTGGAT
TGCTGCAAGGTTTGATTTCTTAGATTCATAATAGCTTCTTGAAGGAATCG
AGTCCGGGAATACCTCCTCTTCAGAATATCCTGAATGATTGGAGGAGAGA
AAGTCACAGGGATAGGGATACGAAAAGTCCCGAGCTGGATGGATGTACTT
ACACTTTGGAAGAAACAGGCGAAATCACCACGGTCAATCGATGCACCAAT
GTGCATTGTATTGATTTAGGTTCTATGGAATGTATCTTGGAGTGA
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Coding sequence (CDS) from alignment at CM002466.1:107257..107701-

>rna5498 ID=rna5498|Name=rna5498|organism=Nannochloropsis gaditana|type=CDS|length=732bp|location=Sequence derived from alignment at CM002466.1:107257..107701- (Nannochloropsis gaditana)
ATTCATAATAGCTTCTTGAAGGAATCGAGTCCGGGAATACCTCCTCTTCA
GAATATCCTGAATGATTGGAGGAGAGAAAGTCACAGGGATAGGGATACGA
AAAGTCCCGAGCTGGATGGATGTACTTACACTTTGGAAGAAACAGGCGAA
ATCACCACGGTCAATCGATGCACCAATGTGCATTGTATTGATTTAGGTTC
TATGGAATGTATCTTGGAGTGAATGAATTTATGTGCATATGCGTGCGATG
GCATGTTAGGGGAAAATGGCAAGATCAAGGAAAGGAGGATCGTAAATTAC
TCTCTCGCTGATAGCACGGGTAAAGCGCCGACTTCAAACGCCCGCCTACC
CGAAATCATAGCGAAGATTCATAATAGCTTCTTGAAGGAATCGAGTCCGG
GAATACCTCCTCTTCAGAATATCCTGAATGATTGGAGGAGAGAAAGTCAC
AGGGATAGGGATACGAAAAGTCCCGAGCTGGATGGATGTACTTACACTTT
GGAAGAAACAGGCGAAATCACCACGGTCAATCGATGCACCAATGTGCATT
GTATTGATTTAGGTTCTATGGAATGTATCTTGGAGTGAATGAATTTATGT
GCATATGCGTGCGATGGCATGTTAGGGGAAAATGGCAAGATCAAGGAAAG
GAGGATCGTAAATTACTCTCTCGCTGATAGCACGGGTAAAGCGCCGACTT
CAAACGCCCGCCTACCCGAAATCATAGCGAAG
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Synonyms
Publications