rna5494, rna5494 (mRNA) Nannochloropsis gaditana

Overview
Namerna5494
Unique Namerna5494
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1320
Alignment locationCM002466.1:94852..95419 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102602g1.5696.mrna
Orig protein idgnl|cribi|Naga_102602g1.5696
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:94852..95419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102602g1gene5306Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5494rna5494-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25193.1cds5480Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5494 ID=rna5494|Name=rna5494|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
ACCCTCCGCCCACGGCCAACATGAATACCTTTCAATTACCAATTCAGGAT
CAGGACGTCCAAATGAAGCGTGTGACACAGTGGTGCGTGCAGCTCCACTG
GTTGCGTGTCCCACTGGGCGTTTTAATTGCAACATAAAAGCGGAGACGGG
TCAGGAGGTTGTCGCCATACTCTGCACCGCACGAGGCCTCCCATGGCTAA
GCGTAAAAAATACTTAATCCTTAGTCCTGCGTGGTTAATCAAAGCCAGCC
ATGACCACCACGCAATTTTCTTTCAACAAAGAGCAAGGTATGCATCCGTC
TAAATCCATAACATCTGCATCATTATTTTTGCTTTAGCCATGGCAGGGTC
CGCCCTTTCCTACAGTAAAGGTGCAGTAGTAGGAAAGGGCACATGGGGCA
GCGTGCGTCTTGGGACGATAGAGAAAAGTGGACGGAAAGTTGCGATCAAG
GAAATCCATCGCTCGATGGAGAGATACGAGGACGGAGTCAATTTCTCTGT
GCTCCGGGAAATCAAGATATTGATGGAATTAAAGCACCGCCACGTGGTTG
AGCTCTTCGATGTGCGGGTGACAGCGGACGGGCTGGAGCTGGTTTTGGAG
TACTGCGAGACGGACCTGAAGAGGGTGGTGGAGGACCGGCGGCGGGTTAA
GGCCATCCGTTACGAGGACGCCAAGGGAATCATGCAACAGCTTCTGCGGG
GCATGCATTTTTTGCATTCCAATTGGATCTTGCACAGGGACTTGAAGCCC
GATAACATCCTGATAACCGCCCAAGGAATTTTGAAAATCGCGGATTTCGG
ACTGGCCCGTTACTTTGGCAACCCCAATGAGACGCTATCTCCGGGTATGC
AAGTCATTACGCGTCAATACCGACCGCCTGAGCTCTTGCTGGGCAGTCGT
GTGTACGGCCCTCCTGTGGATATGTGGTCGATAGGTTGCATCATGGGGGA
GATCCGCCTTCGAGAGTTGCTGTTTCGGGGAGATGAGGACACGGACGTCT
CGCAACTCGCCAAGATATTTCAGGTGTTAGGGACGCCTACCGACGCGACC
TGGCCGTGGTACACGACGCTCCCAGATTATCCACGCTATCACATCACGCC
TCAACCCGTCCCCGACTTGGCGCGTCTCTTGCCTTCCCTGCGAGCGGAGG
AGCTCGCATTGCTTCAAAAATTAATCTCTTTGGATCCAAACCGAAGGCCC
ACGGCGGAGGAGGCGTTGGATTTTGATTATTTTCGGGTGGAACCGCGAGC
AACCCCACCCATCAATTTACCCCTACCCCTGGAAGAAGAAGGAAGAGTTG
CCGGAACAGGGGAGCGTTGA
back to top

protein sequence of rna5494

>rna5494-protein ID=rna5494-protein|Name=rna5494|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MITLATPYNALAFQKTVESWADPIILQEMEGGSTGAPSLQYGLPLGMDRV
LCTRSGPQARREESTRHARPGVFLGLPLA
back to top

mRNA from alignment at CM002466.1:94852..95419+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5494 ID=rna5494|Name=rna5494|organism=Nannochloropsis gaditana|type=mRNA|length=568bp|location=Sequence derived from alignment at CM002466.1:94852..95419+ (Nannochloropsis gaditana)
ATGATCACGCTCGCCACTCCGTACAACGCATTGGCGTTTCAAAAAACCGT
TGAATCGTGGGCGGACCCTATCATTCTTcaggagatggaaggaggtaggt
agggagggaaggagggagggagggagggaggtggggaaggcgggaggggg
agagagggacaggaggaaacGTTTCGGTTGCCACGGCCCAaccctcccac
cttctccccctacctccctatctctctctctccctccctttctccctccc
tcagtacCGGCGCACCTTCCCTTCAATATGGACTCCCTCTGGGAATGGAT
CGTGTGCTATGTACGCGCTCTGGCCCACAAGCacgaagagaagaaaggta
acctacctacctacctacctacctacctacctacctccctccctccctcc
ctccctccctccctccgcttgaGCCACTTCGAAGCTATCGTTTGCATCTC
ACGATAGATgaccatcccccccgccctcccttcctccttccctacctccc
tccttccctccctccccagcacTCGTCATGCCCGACCTGGTGTGTTTCTC
GGCCTTCCTCTCGCATGA
back to top

Coding sequence (CDS) from alignment at CM002466.1:94852..95419+

>rna5494 ID=rna5494|Name=rna5494|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002466.1:94852..95419+ (Nannochloropsis gaditana)
ATGATCACGCTCGCCACTCCGTACAACGCATTGGCGTTTCAAAAAACCGT
TGAATCGTGGGCGGACCCTATCATTCTTcaggagatggaaggaggtagta
cCGGCGCACCTTCCCTTCAATATGGACTCCCTCTGGGAATGGATCGTGTG
CTATGTACGCGCTCTGGCCCACAAGCacgaagagaagaaagcacTCGTCA
TGCCCGACCTGGTGTGTTTCTCGGCCTTCCTCTCGCATGAATGATCACGC
TCGCCACTCCGTACAACGCATTGGCGTTTCAAAAAACCGTTGAATCGTGG
GCGGACCCTATCATTCTTcaggagatggaaggaggtagtacCGGCGCACC
TTCCCTTCAATATGGACTCCCTCTGGGAATGGATCGTGTGCTATGTACGC
GCTCTGGCCCACAAGCacgaagagaagaaagcacTCGTCATGCCCGACCT
GGTGTGTTTCTCGGCCTTCCTCTCGCATGAATGATCACGCTCGCCACTCC
GTACAACGCATTGGCGTTTCAAAAAACCGTTGAATCGTGGGCGGACCCTA
TCATTCTTcaggagatggaaggaggtagtacCGGCGCACCTTCCCTTCAA
TATGGACTCCCTCTGGGAATGGATCGTGTGCTATGTACGCGCTCTGGCCC
ACAAGCacgaagagaagaaagcacTCGTCATGCCCGACCTGGTGTGTTTC
TCGGCCTTCCTCTCGCATGA
back to top
Synonyms
Publications