rna5490, rna5490 (mRNA) Nannochloropsis gaditana

Overview
Namerna5490
Unique Namerna5490
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length774
Alignment locationCM002466.1:81957..82874 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101120g2.4950.mrna
Orig protein idgnl|cribi|Naga_101120g2.4950
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:81957..82874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101120g2gene5302Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25196.1cds5476Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5490rna5490-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5490 ID=rna5490|Name=rna5490|organism=Nannochloropsis gaditana|type=mRNA|length=774bp
ATGAATTTATGCATGTTTTTGTGGTCATTTTGGCCTGCCTGGCTGGTTTT
TAGGTCCTGTGTATACAAGGTAGACCCGACCCTTTGGCCATGTCCCTCGT
GTTTACTACTCATTGCGCTGAACCAAAGTACCCGCAACTTCGTACAACAA
TTACACTCGTCGCAACAAGATGATCGTTTGATGGAAACACTCACATGGTG
GTGCGCAAGGCGAATCAAAGCGTTATCTGGGTGTTTGCCAAAAGCTCTCT
TTGTTTCCCCGGAAGCTATGGCTCGCACCAAGCAAACAGCACGAAAATCG
ACAGGTGGGAAAGCGCCTCGCAAGCAGTTGGCCACCAAGGCGGCCCGCAA
ATCAGCGCCGACGGCAGGGGGTGTGAAGAAACCTCATCGGTACCGGCCTG
GAACGGTCGCCTTGCGGGAGATTCGCAAGTACCAAAAGAGCACCGAGCTC
CTCATTCGGAAGCTGCCATTCCAGCGCCTCGTCCGGGAGATCGCACAGGA
CTTCAAGACCGACCTGCGTTTCCAGAGCACAGCCATTTTGGCGCTTCAGG
AGGCTACAGAGGCTTACCTCGTCGGTCTTTTTGAGGATACGAACCTCTGT
GCCATCCACGCCAAGCGTGTGACGATCATGCCTAAAGACGTCCAGCTTGC
GCGTCGTATCCGAGGAGAACGCGCAGCGAGGAGGGAGATGCCTGCTTTTG
GTTCGAATCAAGGGAGACATGAAGCAGCATTGAGGGCGGGAGGGAGAGGG
GGAACGCAGCTTTGTACATGGTGA
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protein sequence of rna5490

>rna5490-protein ID=rna5490-protein|Name=rna5490|organism=Nannochloropsis gaditana|type=polypeptide|length=267bp
MNTFHTKRGRVRQPRKEETAGFLPSPARQQWSLEKERAQLQLRQQKMLLT
SCVSVDSHQKGTGSFNSPSSRRSQRPSSPPPSLPSSPPPSLPSPPSTAAE
RRAERRRAFLQSSRESDEAIGRARSKSNSPRVERALQQQPSPDLLLNPLH
RLSHAFESHAEAAQRWQGKERRRTMETEGKEEETCHTSSRGIRLPSPSLL
SPPRSLPQTPPPPSSRRITPPSSTGVRTGQEEGREGGREGGREGWRGGLR
QDVEKREQESARLRALM
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mRNA from alignment at CM002466.1:81957..82874-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5490 ID=rna5490|Name=rna5490|organism=Nannochloropsis gaditana|type=mRNA|length=918bp|location=Sequence derived from alignment at CM002466.1:81957..82874- (Nannochloropsis gaditana)
CGACCTCCCCCCTACGTCAACTATTTGATAATTCCCGCATTTCCTTTTTG
GCAGGCTCTTCGGTAAACGGCGCGCCTTCCTCCTGAGAACTATGATCTTC
TAAATCCGAGCTTGGCATGAACACTTTTCATACCAAACGAGGAAGGGTGA
GGCAACCGAGGAAGGAAGAGACAGCAGGTTTTCTTCCCTCCCCTGCCCGA
CAACAATGGTCCTTGGAAAAAGAACGCGCGCAGCTGCAATTGCGGCAGCA
AAAAATGCTGTTGACATCTTGTGTGTCGGTAGATAGCCATCAAAAAGGCA
CGGGATCCTTTAATTCACCTTCAAGCAGGCGGTCGCAGCGCCCGTCCTCC
CCCCCTCCCTCCCTCCCTTCCTCCCCCCCTCCTTCCCTCCCGTCCCCGCC
TTCCACCGCCGCGGAGCGCCGGGCAGAACGAAGACGTGCCTTTTTGCAAT
CGTCTCGCGAAAGTGACGAAGCGATAGGGCGGGCGAGATCCAAGAGTAAT
TCACCCAGAGTCGAGCGGGCACTGCAGCAACAGCCCTCCCCTGACCTTTT
ATTGAATCCATTGCATCGACTGTCGCACGCATTCGAAAGCCACGCAGAAG
CAGCCCAGCGCTGGCAAGGGAAGGAAAGGCGTCGGACTATGGAAACGGAG
GGCAAGGAAGAGGAAACTTGCCACACTTCAAGTCGAGGCATTCGACTACC
TTCCCCTTCCCTTCTATCCCCCCCTCGCTCCCTCCCTCAGACCCCTCCTC
CTCCCTCTTCCCGCCGCATCACCCCTCCTTCCTCGACAGGCGTGCGGACA
GGCCAGGAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTG
GAGGGGTGGCCTGAGGCAGGATGTCGAGAAGCGGGAGCAGGAATCCGCAA
GGTTGAGAGCATTGATGG
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Coding sequence (CDS) from alignment at CM002466.1:81957..82874-

>rna5490 ID=rna5490|Name=rna5490|organism=Nannochloropsis gaditana|type=CDS|length=802bp|location=Sequence derived from alignment at CM002466.1:81957..82874- (Nannochloropsis gaditana)
ATGAACACTTTTCATACCAAACGAGGAAGGGTGAGGCAACCGAGGAAGGA
AGAGACAGCAGGTTTTCTTCCCTCCCCTGCCCGACAACAATGGTCCTTGG
AAAAAGAACGCGCGCAGCTGCAATTGCGGCAGCAAAAAATGCTGTTGACA
TCTTGTGTGTCGGTAGATAGCCATCAAAAAGGCACGGGATCCTTTAATTC
ACCTTCAAGCAGGCGGTCGCAGCGCCCGTCCTCCCCCCCTCCCTCCCTCC
CTTCCTCCCCCCCTCCTTCCCTCCCGTCCCCGCCTTCCACCGCCGCGGAG
CGCCGGGCAGAACGAAGACGTGCCTTTTTGCAATCGTCTCGCGAAAGTGA
CGAAGCGATAGGGCGGGCGAGATCCAAGAGTAATTCACCCAGAGTCGAGC
GGGCACTGCAGCAACAGCCCTCCCCTGACCTTTTATTGAATCCATTGCAT
CGACTGTCGCACGCATTCGAAAGCCACGCAGAAGCAGCCCAGCGCTGGCA
AGGGAAGGAAAGGCGTCGGACTATGGAAACGGAGGGCAAGGAAGAGGAAA
CTTGCCACACTTCAAGTCGAGGCATTCGACTACCTTCCCCTTCCCTTCTA
TCCCCCCCTCGCTCCCTCCCTCAGACCCCTCCTCCTCCCTCTTCCCGCCG
CATCACCCCTCCTTCCTCGACAGGCGTGCGGACAGGCCAGGAGGAAGGAA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGGAGGGGTGGCCTGAGG
CAGGATGTCGAGAAGCGGGAGCAGGAATCCGCAAGGTTGAGAGCATTGAT
GG
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Synonyms
Publications